RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 FUBP3Q96I24 572 aaKnown RBP eCLIP6.73□□□□□ -1.33
SMAD4-208ENST00000589706 COG3Q96JB2 828 aa6.73□□□□□ -1.33
SMAD4-208ENST00000589706 SCYL1Q96KG9 808 aa6.73□□□□□ -1.33
SMAD4-208ENST00000589706 KCNJ15Q99712 375 aa6.73□□□□□ -1.33
SMAD4-208ENST00000589706 METTL22Q9BUU2 404 aaPredicted RBP6.73□□□□□ -1.33
SMAD4-208ENST00000589706 SLC12A5Q9H2X9 1139 aa6.73□□□□□ -1.33
SMAD4-208ENST00000589706 LUC7LQ9NQ29 371 aaKnown RBP6.73□□□□□ -1.33
SMAD4-208ENST00000589706 OXSMQ9NWU1 459 aa6.73□□□□□ -1.33
SMAD4-208ENST00000589706 NOB1Q9ULX3 412 aaKnown RBP6.73□□□□□ -1.33
SMAD4-208ENST00000589706 RIPOR2Q9Y4F9 1068 aa6.73□□□□□ -1.33
SMAD4-208ENST00000589706 ADAMTS7Q9UKP4 1686 aa6.73□□□□□ -1.33
SMAD4-208ENST00000589706 NRXN2Q9P2S2 1712 aa6.73□□□□□ -1.33
SMAD4-208ENST00000589706 CARMIL3Q8ND23 1372 aa6.72□□□□□ -1.33
SMAD4-208ENST00000589706 CTIFO43310 598 aaKnown RBP6.72□□□□□ -1.33
SMAD4-208ENST00000589706 DHX16O60231 1041 aaKnown RBP6.72□□□□□ -1.33
SMAD4-208ENST00000589706 REC8O95072 547 aa6.72□□□□□ -1.33
SMAD4-208ENST00000589706 MYBL2P10244 700 aa6.72□□□□□ -1.33
SMAD4-208ENST00000589706 PDE6AP16499 860 aa6.72□□□□□ -1.33
SMAD4-208ENST00000589706 CCND1P24385 295 aa6.72□□□□□ -1.33
SMAD4-208ENST00000589706 RPL10P27635 214 aaKnown RBP6.72□□□□□ -1.33
SMAD4-208ENST00000589706 IARSP41252 1262 aaKnown RBP6.72□□□□□ -1.33
SMAD4-208ENST00000589706 TEKQ02763 1124 aa6.72□□□□□ -1.33
SMAD4-208ENST00000589706 NFIAQ12857 509 aa6.72□□□□□ -1.33
SMAD4-208ENST00000589706 CHAF1AQ13111 956 aaPredicted RBP6.72□□□□□ -1.33
SMAD4-208ENST00000589706 KLF1Q13351 362 aaPredicted RBP6.72□□□□□ -1.33
SMAD4-208ENST00000589706 OS9Q13438 667 aaPredicted RBP6.72□□□□□ -1.33
SMAD4-208ENST00000589706 KLHL40Q2TBA0 621 aa6.72□□□□□ -1.33
SMAD4-208ENST00000589706 MAP9Q49MG5 647 aa6.72□□□□□ -1.33
SMAD4-208ENST00000589706 NXNQ6DKJ4 435 aa6.72□□□□□ -1.33
SMAD4-208ENST00000589706 CTU1Q7Z7A3 348 aaKnown RBP6.72□□□□□ -1.33
SMAD4-208ENST00000589706 OSTM1Q86WC4 334 aa6.72□□□□□ -1.33
SMAD4-208ENST00000589706 GAS2L3Q86XJ1 694 aa6.72□□□□□ -1.33
SMAD4-208ENST00000589706 CREG2Q8IUH2 290 aa6.72□□□□□ -1.33
SMAD4-208ENST00000589706 IFNL2Q8IZJ0 200 aa6.72□□□□□ -1.33
SMAD4-208ENST00000589706 CLRN3Q8NCR9 226 aa6.72□□□□□ -1.33
SMAD4-208ENST00000589706 TMEM52Q8NDY8 209 aa6.72□□□□□ -1.33
SMAD4-208ENST00000589706 JPH3Q8WXH2 748 aaPredicted RBP6.72□□□□□ -1.33
SMAD4-208ENST00000589706 DPF3Q92784 378 aa6.72□□□□□ -1.33
SMAD4-208ENST00000589706 SLC5A5Q92911 643 aa6.72□□□□□ -1.33
SMAD4-208ENST00000589706 HHIPL1Q96JK4 782 aa6.72□□□□□ -1.33
SMAD4-208ENST00000589706 FAM210AQ96ND0 272 aa6.72□□□□□ -1.33
SMAD4-208ENST00000589706 DBNDD2Q9BQY9 259 aa6.72□□□□□ -1.33
SMAD4-208ENST00000589706 TACO1Q9BSH4 297 aaKnown RBP6.72□□□□□ -1.33
SMAD4-208ENST00000589706 BOCQ9BWV1 1114 aa6.72□□□□□ -1.33
SMAD4-208ENST00000589706 JAM3Q9BX67 310 aa6.72□□□□□ -1.33
SMAD4-208ENST00000589706 OSBPL1AQ9BXW6 950 aa6.72□□□□□ -1.33
SMAD4-208ENST00000589706 RHOBTB2Q9BYZ6 727 aa6.72□□□□□ -1.33
SMAD4-208ENST00000589706 ERVK13-1Q9NX77 482 aa6.72□□□□□ -1.33
SMAD4-208ENST00000589706 IP6K2Q9UHH9 426 aa6.72□□□□□ -1.33
SMAD4-208ENST00000589706 ADGRE2Q9UHX3 823 aa6.72□□□□□ -1.33
SMAD4-208ENST00000589706 LUC7L2Q9Y383 392 aaKnown RBP6.72□□□□□ -1.33
SMAD4-208ENST00000589706 RTL1A6NKG5 1358 aa6.71□□□□□ -1.33
SMAD4-208ENST00000589706 SLC12A8A0AV02 714 aa6.71□□□□□ -1.34
SMAD4-208ENST00000589706 GOLGA6CA6NDK9 693 aa6.71□□□□□ -1.34
SMAD4-208ENST00000589706 GOLGA6BA6NDN3 693 aa6.71□□□□□ -1.34
SMAD4-208ENST00000589706 C1QTNF9BB2RNN3 333 aa6.71□□□□□ -1.34
SMAD4-208ENST00000589706 H7BY64 318 aa6.71□□□□□ -1.34
SMAD4-208ENST00000589706 TGM5O43548 720 aa6.71□□□□□ -1.34
SMAD4-208ENST00000589706 KRT37O76014 449 aa6.71□□□□□ -1.34
SMAD4-208ENST00000589706 CELF2O95319 508 aaKnown RBP6.71□□□□□ -1.34
SMAD4-208ENST00000589706 GOLGA6DP0CG33 693 aa6.71□□□□□ -1.34
SMAD4-208ENST00000589706 PHKG2P15735 406 aa6.71□□□□□ -1.34
SMAD4-208ENST00000589706 PDE6BP35913 854 aa6.71□□□□□ -1.34
SMAD4-208ENST00000589706 GRIK1P39086 918 aa6.71□□□□□ -1.34
SMAD4-208ENST00000589706 TDO2P48775 406 aa6.71□□□□□ -1.34
SMAD4-208ENST00000589706 EGR3Q06889 387 aa6.71□□□□□ -1.34
SMAD4-208ENST00000589706 NOGQ13253 232 aa6.71□□□□□ -1.34
SMAD4-208ENST00000589706 HLTFQ14527 1009 aaKnown RBP eCLIP6.71□□□□□ -1.34
SMAD4-208ENST00000589706 HLA-DQA1Q5Y7H0 255 aa6.71□□□□□ -1.34
SMAD4-208ENST00000589706 INTS5Q6P9B9 1019 aaKnown RBP6.71□□□□□ -1.34
SMAD4-208ENST00000589706 CEP68Q76N32 757 aa6.71□□□□□ -1.34
SMAD4-208ENST00000589706 NLRP10Q86W26 655 aa6.71□□□□□ -1.34
SMAD4-208ENST00000589706 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.71□□□□□ -1.34
SMAD4-208ENST00000589706 TMEM169Q96HH4 297 aa6.71□□□□□ -1.34
SMAD4-208ENST00000589706 FCRL2Q96LA5 508 aaPredicted RBP6.71□□□□□ -1.34
SMAD4-208ENST00000589706 SLC13A1Q9BZW2 595 aa6.71□□□□□ -1.34
SMAD4-208ENST00000589706 PANK3Q9H999 370 aa6.71□□□□□ -1.34
SMAD4-208ENST00000589706 LRRC4CQ9HCJ2 640 aa6.71□□□□□ -1.34
SMAD4-208ENST00000589706 GOLGA6AQ9NYA3 693 aa6.71□□□□□ -1.34
SMAD4-208ENST00000589706 SNX11Q9Y5W9 270 aa6.71□□□□□ -1.34
SMAD4-208ENST00000589706 PITPNM2Q9BZ72 1349 aa6.71□□□□□ -1.34
SMAD4-208ENST00000589706 WTIPA6NIX2 430 aaPredicted RBP6.7□□□□□ -1.34
SMAD4-208ENST00000589706 ERVV-2B6SEH9 535 aa6.7□□□□□ -1.34
SMAD4-208ENST00000589706 H7C1D1 291 aa6.7□□□□□ -1.34
SMAD4-208ENST00000589706 ZNF561-AS1K7EIQ3 104 aa6.7□□□□□ -1.34
SMAD4-208ENST00000589706 PRPF3O43395 683 aaKnown RBP6.7□□□□□ -1.34
SMAD4-208ENST00000589706 SNUPNO95149 360 aaKnown RBP6.7□□□□□ -1.34
SMAD4-208ENST00000589706 MT-CO1P00395 513 aa6.7□□□□□ -1.34
SMAD4-208ENST00000589706 ESR1P03372 595 aa6.7□□□□□ -1.34
SMAD4-208ENST00000589706 KRT18P05783 430 aaKnown RBP6.7□□□□□ -1.34
SMAD4-208ENST00000589706 TPM3P06753 285 aa6.7□□□□□ -1.34
SMAD4-208ENST00000589706 ZBTB48P10074 688 aaPredicted RBP6.7□□□□□ -1.34
SMAD4-208ENST00000589706 HSPA5P11021 654 aaKnown RBP6.7□□□□□ -1.34
SMAD4-208ENST00000589706 GNAT1P11488 350 aa6.7□□□□□ -1.34
SMAD4-208ENST00000589706 NEFHP12036 1026 aa6.7□□□□□ -1.34
SMAD4-208ENST00000589706 KRT15P19012 456 aa6.7□□□□□ -1.34
SMAD4-208ENST00000589706 CASQ1P31415 396 aa6.7□□□□□ -1.34
SMAD4-208ENST00000589706 JAM2P57087 298 aa6.7□□□□□ -1.34
SMAD4-208ENST00000589706 IFI16Q16666 785 aaKnown RBP6.7□□□□□ -1.34
SMAD4-208ENST00000589706 BROXQ5VW32 411 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms