RNA–Protein interactions for RNA: ENST00000586792.5

ZNF540-204, Transcript of zinc finger protein 540, human

TSL 3 BASIC

Gene ZNF540, Length 564 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ZNF540-204	ENST00000586792	CARMIL3	Q8ND23	1372 aa		5.92	□□□□□ -1.46
ZNF540-204	ENST00000586792	C10orf71	Q711Q0	1435 aa		5.91	□□□□□ -1.46
ZNF540-204	ENST00000586792	LOC102724159	A0A0B4J2E5	919 aa		5.91	□□□□□ -1.46
ZNF540-204	ENST00000586792	HMGB1P1	B2RPK0	211 aa	Predicted RBP	5.91	□□□□□ -1.46
ZNF540-204	ENST00000586792	KCNQ3	O43525	872 aa		5.91	□□□□□ -1.46
ZNF540-204	ENST00000586792	KCNH1	O95259	989 aa		5.91	□□□□□ -1.46
ZNF540-204	ENST00000586792	COL6A1	P12109	1028 aa		5.91	□□□□□ -1.46
ZNF540-204	ENST00000586792	LMO1	P25800	156 aa		5.91	□□□□□ -1.46
ZNF540-204	ENST00000586792	ST5	P78524	1137 aa		5.91	□□□□□ -1.46
ZNF540-204	ENST00000586792	DGCR2	P98153	550 aa		5.91	□□□□□ -1.46
ZNF540-204	ENST00000586792	PWP2	Q15269	919 aa	Known RBP	5.91	□□□□□ -1.46
ZNF540-204	ENST00000586792	SMAD2	Q15796	467 aa	Known RBP	5.91	□□□□□ -1.46
ZNF540-204	ENST00000586792	STEAP3	Q658P3	488 aa		5.91	□□□□□ -1.46
ZNF540-204	ENST00000586792	E4F1	Q66K89	784 aa	Predicted RBP	5.91	□□□□□ -1.46
ZNF540-204	ENST00000586792	MRGPRG	Q86SM5	289 aa		5.91	□□□□□ -1.46
ZNF540-204	ENST00000586792	FAM89A	Q96GI7	184 aa		5.91	□□□□□ -1.46
ZNF540-204	ENST00000586792	CYP26B1	Q9NR63	512 aa		5.91	□□□□□ -1.46
ZNF540-204	ENST00000586792	BABAM1	Q9NWV8	329 aa		5.91	□□□□□ -1.46
ZNF540-204	ENST00000586792	MIS18A	Q9NYP9	233 aa		5.91	□□□□□ -1.46
ZNF540-204	ENST00000586792	PPT2	Q9UMR5	302 aa		5.91	□□□□□ -1.46
ZNF540-204	ENST00000586792	KIF13B	Q9NQT8	1826 aa		5.9	□□□□□ -1.46
ZNF540-204	ENST00000586792	ANKRD34B	A5PLL1	514 aa		5.9	□□□□□ -1.46
ZNF540-204	ENST00000586792	APAF1	O14727	1248 aa		5.9	□□□□□ -1.46
ZNF540-204	ENST00000586792	TADA3	O75528	432 aa		5.9	□□□□□ -1.46
ZNF540-204	ENST00000586792	A1BG	P04217	495 aa		5.9	□□□□□ -1.46
ZNF540-204	ENST00000586792	MYL6B	P14649	208 aa		5.9	□□□□□ -1.46
ZNF540-204	ENST00000586792	MAK	P20794	623 aa		5.9	□□□□□ -1.46
ZNF540-204	ENST00000586792	ACO1	P21399	889 aa	Known RBP	5.9	□□□□□ -1.46
ZNF540-204	ENST00000586792	EIF5	P55010	431 aa	Known RBP	5.9	□□□□□ -1.46
ZNF540-204	ENST00000586792	EIF4A1	P60842	406 aa	Known RBP	5.9	□□□□□ -1.46
ZNF540-204	ENST00000586792	EMC4	Q5J8M3	183 aa		5.9	□□□□□ -1.46
ZNF540-204	ENST00000586792	TMED8	Q6PL24	325 aa	Predicted RBP	5.9	□□□□□ -1.46
ZNF540-204	ENST00000586792	TMC5	Q6UXY8	1006 aa		5.9	□□□□□ -1.46
ZNF540-204	ENST00000586792	LDLRAD3	Q86YD5	345 aa		5.9	□□□□□ -1.46
ZNF540-204	ENST00000586792	SCUBE1	Q8IWY4	988 aa		5.9	□□□□□ -1.46
ZNF540-204	ENST00000586792	REXO1L1P	Q8IX06	675 aa		5.9	□□□□□ -1.46
ZNF540-204	ENST00000586792	FUK	Q8N0W3	1084 aa		5.9	□□□□□ -1.46
ZNF540-204	ENST00000586792	NGEF	Q8N5V2	710 aa		5.9	□□□□□ -1.46
ZNF540-204	ENST00000586792	PHOSPHO1	Q8TCT1	267 aa		5.9	□□□□□ -1.46
ZNF540-204	ENST00000586792	VOPP1	Q96AW1	172 aa		5.9	□□□□□ -1.46
ZNF540-204	ENST00000586792	NEIL1	Q96FI4	390 aa	Predicted RBP	5.9	□□□□□ -1.46
ZNF540-204	ENST00000586792	BCL2L13	Q9BXK5	485 aa		5.9	□□□□□ -1.46
ZNF540-204	ENST00000586792	DLL4	Q9NR61	685 aa		5.9	□□□□□ -1.46
ZNF540-204	ENST00000586792	EMC9	Q9Y3B6	208 aa		5.9	□□□□□ -1.46
ZNF540-204	ENST00000586792	USP16	Q9Y5T5	823 aa		5.9	□□□□□ -1.46
ZNF540-204	ENST00000586792	N4BP2	Q86UW6	1770 aa	Predicted RBP	5.9	□□□□□ -1.47
ZNF540-204	ENST00000586792	PXDNL	A1KZ92	1463 aa		5.9	□□□□□ -1.47
ZNF540-204	ENST00000586792	CHD4	Q14839	1912 aa		5.89	□□□□□ -1.47
ZNF540-204	ENST00000586792	PRAMEF22	A3QJZ6	481 aa		5.89	□□□□□ -1.47
ZNF540-204	ENST00000586792		H7BY64	318 aa		5.89	□□□□□ -1.47
ZNF540-204	ENST00000586792	POLRMT	O00411	1230 aa	Known RBP	5.89	□□□□□ -1.47
ZNF540-204	ENST00000586792	NOP56	O00567	594 aa	Known RBP	5.89	□□□□□ -1.47
ZNF540-204	ENST00000586792	MAFK	O60675	156 aa		5.89	□□□□□ -1.47
ZNF540-204	ENST00000586792	RAD17	O75943	681 aa		5.89	□□□□□ -1.47
ZNF540-204	ENST00000586792	SERPINB2	P05120	415 aa		5.89	□□□□□ -1.47
ZNF540-204	ENST00000586792	ZNF16	P17020	682 aa	Predicted RBP	5.89	□□□□□ -1.47
ZNF540-204	ENST00000586792	EIF2S2	P20042	333 aa	Known RBP	5.89	□□□□□ -1.47
ZNF540-204	ENST00000586792	PTMS	P20962	102 aa		5.89	□□□□□ -1.47
ZNF540-204	ENST00000586792	BCL6	P41182	706 aa		5.89	□□□□□ -1.47
ZNF540-204	ENST00000586792	PIP4K2A	P48426	406 aa	Predicted RBP	5.89	□□□□□ -1.47
ZNF540-204	ENST00000586792	GNAI1	P63096	354 aa		5.89	□□□□□ -1.47
ZNF540-204	ENST00000586792	DDR1	Q08345	913 aa		5.89	□□□□□ -1.47
ZNF540-204	ENST00000586792	TUBA3C	Q13748	450 aa		5.89	□□□□□ -1.47
ZNF540-204	ENST00000586792	TUBA3E	Q6PEY2	450 aa		5.89	□□□□□ -1.47
ZNF540-204	ENST00000586792	POLN	Q7Z5Q5	900 aa		5.89	□□□□□ -1.47
ZNF540-204	ENST00000586792	C19orf47	Q8N9M1	422 aa	Known RBP	5.89	□□□□□ -1.47
ZNF540-204	ENST00000586792	CNBD1	Q8NA66	436 aa		5.89	□□□□□ -1.47
ZNF540-204	ENST00000586792	PCDHB10	Q9UN67	800 aa		5.89	□□□□□ -1.47
ZNF540-204	ENST00000586792	SRCAP	Q6ZRS2	3230 aa		5.89	□□□□□ -1.47
ZNF540-204	ENST00000586792	AFDN	P55196	1824 aa	Known RBP	5.88	□□□□□ -1.47
ZNF540-204	ENST00000586792		A0A0G2JLW4	131 aa		5.88	□□□□□ -1.47
ZNF540-204	ENST00000586792		H0YIN7	160 aa		5.88	□□□□□ -1.47
ZNF540-204	ENST00000586792	FBXO21	O94952	628 aa		5.88	□□□□□ -1.47
ZNF540-204	ENST00000586792	CAMTA2	O94983	1202 aa		5.88	□□□□□ -1.47
ZNF540-204	ENST00000586792	C1S	P09871	688 aa		5.88	□□□□□ -1.47
ZNF540-204	ENST00000586792	CSF2RB	P32927	897 aa		5.88	□□□□□ -1.47
ZNF540-204	ENST00000586792	RAC3	P60763	192 aa		5.88	□□□□□ -1.47
ZNF540-204	ENST00000586792	COL9A2	Q14055	689 aa	Predicted RBP	5.88	□□□□□ -1.47
ZNF540-204	ENST00000586792	DALRD3	Q5D0E6	543 aa	Known RBP	5.88	□□□□□ -1.47
ZNF540-204	ENST00000586792	TBC1D9B	Q66K14	1250 aa		5.88	□□□□□ -1.47
ZNF540-204	ENST00000586792	VASN	Q6EMK4	673 aa		5.88	□□□□□ -1.47
ZNF540-204	ENST00000586792	CLEC4G	Q6UXB4	293 aa		5.88	□□□□□ -1.47
ZNF540-204	ENST00000586792	NBPF5P	Q86XG9	351 aa	Predicted RBP	5.88	□□□□□ -1.47
ZNF540-204	ENST00000586792	FAM9B	Q8IZU0	186 aa		5.88	□□□□□ -1.47
ZNF540-204	ENST00000586792	BVES	Q8NE79	360 aa		5.88	□□□□□ -1.47
ZNF540-204	ENST00000586792	MICAL1	Q8TDZ2	1067 aa		5.88	□□□□□ -1.47
ZNF540-204	ENST00000586792	FRS2	Q8WU20	508 aa		5.88	□□□□□ -1.47
ZNF540-204	ENST00000586792	CACTIN	Q8WUQ7	758 aa	Known RBP	5.88	□□□□□ -1.47
ZNF540-204	ENST00000586792	DIO2	Q92813	273 aa		5.88	□□□□□ -1.47
ZNF540-204	ENST00000586792	PRRX2	Q99811	253 aa		5.88	□□□□□ -1.47
ZNF540-204	ENST00000586792	NYX	Q9GZU5	481 aa		5.88	□□□□□ -1.47
ZNF540-204	ENST00000586792	IFT57	Q9NWB7	429 aa		5.88	□□□□□ -1.47
ZNF540-204	ENST00000586792	WASF3	Q9UPY6	502 aa		5.88	□□□□□ -1.47
ZNF540-204	ENST00000586792	NIP7	Q9Y221	180 aa	Known RBP eCLIP	5.88	□□□□□ -1.47
ZNF540-204	ENST00000586792	KIAA1551	Q9HCM1	1747 aa		5.88	□□□□□ -1.47
ZNF540-204	ENST00000586792	NRXN2	Q9P2S2	1712 aa		5.88	□□□□□ -1.47
ZNF540-204	ENST00000586792	DLEC1	Q9Y238	1755 aa		5.88	□□□□□ -1.47
ZNF540-204	ENST00000586792	HOXB7	P09629	217 aa		5.87	□□□□□ -1.47
ZNF540-204	ENST00000586792	NAT2	P11245	290 aa		5.87	□□□□□ -1.47
ZNF540-204	ENST00000586792	DPEP1	P16444	411 aa		5.87	□□□□□ -1.47

Retrieved 100 of 20,778 RNA–protein pairs in 1315.9 ms