RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 AK8Q96MA6 479 aa12.06□□□□□ -0.48
CLIP3-203ENST00000586457 FAM193BQ96PV7 902 aaPredicted RBP12.06□□□□□ -0.48
CLIP3-203ENST00000586457 MRPL9Q9BYD2 267 aaKnown RBP12.06□□□□□ -0.48
CLIP3-203ENST00000586457 LMAN2LQ9H0V9 348 aa12.06□□□□□ -0.48
CLIP3-203ENST00000586457 C2orf40Q9H1Z8 148 aa12.06□□□□□ -0.48
CLIP3-203ENST00000586457 ZSCAN16Q9H4T2 348 aaPredicted RBP12.06□□□□□ -0.48
CLIP3-203ENST00000586457 UBN1Q9NPG3 1134 aa12.06□□□□□ -0.48
CLIP3-203ENST00000586457 AGPAT5Q9NUQ2 364 aa12.06□□□□□ -0.48
CLIP3-203ENST00000586457 THEGQ9P2T0 379 aa12.06□□□□□ -0.48
CLIP3-203ENST00000586457 SIP14410 1827 aa12.05□□□□□ -0.48
CLIP3-203ENST00000586457 CARNS1A5YM72 827 aa12.05□□□□□ -0.48
CLIP3-203ENST00000586457 STX6O43752 255 aa12.05□□□□□ -0.48
CLIP3-203ENST00000586457 LPXNO60711 386 aa12.05□□□□□ -0.48
CLIP3-203ENST00000586457 CSPG5O95196 566 aa12.05□□□□□ -0.48
CLIP3-203ENST00000586457 EYA4O95677 639 aa12.05□□□□□ -0.48
CLIP3-203ENST00000586457 LAG3P18627 525 aa12.05□□□□□ -0.48
CLIP3-203ENST00000586457 CDC25AP30304 524 aa12.05□□□□□ -0.48
CLIP3-203ENST00000586457 TXLNAP40222 546 aa12.05□□□□□ -0.48
CLIP3-203ENST00000586457 ALDH7A1P49419 539 aaKnown RBP12.05□□□□□ -0.48
CLIP3-203ENST00000586457 GATMP50440 423 aa12.05□□□□□ -0.48
CLIP3-203ENST00000586457 PTENP60484 403 aa12.05□□□□□ -0.48
CLIP3-203ENST00000586457 MRPS5P82675 430 aaKnown RBP12.05□□□□□ -0.48
CLIP3-203ENST00000586457 CEBPZQ03701 1054 aaKnown RBP12.05□□□□□ -0.48
CLIP3-203ENST00000586457 SF3A1Q15459 793 aaKnown RBP12.05□□□□□ -0.48
CLIP3-203ENST00000586457 LONRF3Q496Y0 759 aa12.05□□□□□ -0.48
CLIP3-203ENST00000586457 TIGD5Q53EQ6 642 aa12.05□□□□□ -0.48
CLIP3-203ENST00000586457 APBB1IPQ7Z5R6 666 aaPredicted RBP12.05□□□□□ -0.48
CLIP3-203ENST00000586457 CABP7Q86V35 215 aa12.05□□□□□ -0.48
CLIP3-203ENST00000586457 LRRC43Q8N309 656 aa12.05□□□□□ -0.48
CLIP3-203ENST00000586457 TMEM87AQ8NBN3 555 aa12.05□□□□□ -0.48
CLIP3-203ENST00000586457 HELQQ8TDG4 1101 aa12.05□□□□□ -0.48
CLIP3-203ENST00000586457 ATXN2LQ8WWM7 1075 aaKnown RBP12.05□□□□□ -0.48
CLIP3-203ENST00000586457 P2RX5Q93086 422 aa12.05□□□□□ -0.48
CLIP3-203ENST00000586457 HLA-CQ95604 372 aa12.05□□□□□ -0.48
CLIP3-203ENST00000586457 ALG13Q9NP73 1137 aaKnown RBP12.05□□□□□ -0.48
CLIP3-203ENST00000586457 XPNPEP1Q9NQW7 623 aa12.05□□□□□ -0.48
CLIP3-203ENST00000586457 FAM105AQ9NUU6 356 aa12.05□□□□□ -0.48
CLIP3-203ENST00000586457 TYW1Q9NV66 732 aaKnown RBP12.05□□□□□ -0.48
CLIP3-203ENST00000586457 COG5Q9UP83 839 aa12.05□□□□□ -0.48
CLIP3-203ENST00000586457 INPP5FQ9Y2H2 1132 aa12.05□□□□□ -0.48
CLIP3-203ENST00000586457 PCDHB2Q9Y5E7 798 aa12.05□□□□□ -0.48
CLIP3-203ENST00000586457 PTPRSQ13332 1948 aa12.04□□□□□ -0.48
CLIP3-203ENST00000586457 MYO9BQ13459 2157 aa12.04□□□□□ -0.48
CLIP3-203ENST00000586457 CCDC169A6NNP5 214 aa12.04□□□□□ -0.48
CLIP3-203ENST00000586457 PP2D1A8MPX8 630 aa12.04□□□□□ -0.48
CLIP3-203ENST00000586457 E9PMD0 336 aa12.04□□□□□ -0.48
CLIP3-203ENST00000586457 C5orf67F2Z3F1 127 aa12.04□□□□□ -0.48
CLIP3-203ENST00000586457 NCK2O43639 380 aa12.04□□□□□ -0.48
CLIP3-203ENST00000586457 NR1I2O75469 434 aa12.04□□□□□ -0.48
CLIP3-203ENST00000586457 KRT18P05783 430 aaKnown RBP12.04□□□□□ -0.48
CLIP3-203ENST00000586457 ITGA4P13612 1032 aa12.04□□□□□ -0.48
CLIP3-203ENST00000586457 GLRA2P23416 452 aa12.04□□□□□ -0.48
CLIP3-203ENST00000586457 LONP1P36776 959 aaKnown RBP12.04□□□□□ -0.48
CLIP3-203ENST00000586457 EFNA5P52803 228 aa12.04□□□□□ -0.48
CLIP3-203ENST00000586457 CAPSQ13938 189 aa12.04□□□□□ -0.48
CLIP3-203ENST00000586457 MAPK6Q16659 721 aa12.04□□□□□ -0.48
CLIP3-203ENST00000586457 CRIPAKQ8N1N5 446 aa12.04□□□□□ -0.48
CLIP3-203ENST00000586457 KLHL23Q8NBE8 558 aa12.04□□□□□ -0.48
CLIP3-203ENST00000586457 SPRYD3Q8NCJ5 442 aa12.04□□□□□ -0.48
CLIP3-203ENST00000586457 ASAP3Q8TDY4 903 aa12.04□□□□□ -0.48
CLIP3-203ENST00000586457 CCDC51Q96ER9 411 aa12.04□□□□□ -0.48
CLIP3-203ENST00000586457 DRC1Q96MC2 740 aa12.04□□□□□ -0.48
CLIP3-203ENST00000586457 ZNF396Q96N95 335 aaPredicted RBP12.04□□□□□ -0.48
CLIP3-203ENST00000586457 ZNF558Q96NG5 402 aa12.04□□□□□ -0.48
CLIP3-203ENST00000586457 PLIN2Q99541 437 aa12.04□□□□□ -0.48
CLIP3-203ENST00000586457 ADPGKQ9BRR6 497 aa12.04□□□□□ -0.48
CLIP3-203ENST00000586457 TRAIPQ9BWF2 469 aa12.04□□□□□ -0.48
CLIP3-203ENST00000586457 GPRC5CQ9NQ84 441 aa12.04□□□□□ -0.48
CLIP3-203ENST00000586457 PRMT7Q9NVM4 692 aaPredicted RBP12.04□□□□□ -0.48
CLIP3-203ENST00000586457 KANSL3Q9P2N6 904 aa12.04□□□□□ -0.48
CLIP3-203ENST00000586457 CCDC39Q9UFE4 941 aa12.04□□□□□ -0.48
CLIP3-203ENST00000586457 PLAGL2Q9UPG8 496 aa12.04□□□□□ -0.48
CLIP3-203ENST00000586457 TTC3P53804 2025 aa12.04□□□□□ -0.48
CLIP3-203ENST00000586457 CHD9Q3L8U1 2897 aa12.03□□□□□ -0.48
CLIP3-203ENST00000586457 K7ERI5 159 aa12.03□□□□□ -0.48
CLIP3-203ENST00000586457 SLC26A4O43511 780 aa12.03□□□□□ -0.48
CLIP3-203ENST00000586457 CA8P35219 290 aa12.03□□□□□ -0.48
CLIP3-203ENST00000586457 PPM1AP35813 382 aa12.03□□□□□ -0.48
CLIP3-203ENST00000586457 NAMPTP43490 491 aa12.03□□□□□ -0.48
CLIP3-203ENST00000586457 SMTNP53814 917 aa12.03□□□□□ -0.48
CLIP3-203ENST00000586457 PRPF4BQ13523 1007 aaKnown RBP12.03□□□□□ -0.48
CLIP3-203ENST00000586457 IL17AQ16552 155 aa12.03□□□□□ -0.48
CLIP3-203ENST00000586457 LPPQ93052 612 aa12.03□□□□□ -0.48
CLIP3-203ENST00000586457 CPB2Q96IY4 423 aa12.03□□□□□ -0.48
CLIP3-203ENST00000586457 CASD1Q96PB1 797 aa12.03□□□□□ -0.48
CLIP3-203ENST00000586457 TIPINQ9BVW5 301 aa12.03□□□□□ -0.48
CLIP3-203ENST00000586457 NFKBIZQ9BYH8 718 aa12.03□□□□□ -0.48
CLIP3-203ENST00000586457 GBP3Q9H0R5 595 aa12.03□□□□□ -0.48
CLIP3-203ENST00000586457 NSUN3Q9H649 340 aaKnown RBP12.03□□□□□ -0.48
CLIP3-203ENST00000586457 MINDY3Q9H8M7 445 aa12.03□□□□□ -0.48
CLIP3-203ENST00000586457 RC3H2Q9HBD1 1191 aaKnown RBP12.03□□□□□ -0.48
CLIP3-203ENST00000586457 DLL1O00548 723 aa12.02□□□□□ -0.49
CLIP3-203ENST00000586457 GRM6O15303 877 aa12.02□□□□□ -0.49
CLIP3-203ENST00000586457 TSPAN1O60635 241 aa12.02□□□□□ -0.49
CLIP3-203ENST00000586457 ZNF623O75123 536 aa12.02□□□□□ -0.49
CLIP3-203ENST00000586457 UBE3AQ05086 875 aa12.02□□□□□ -0.49
CLIP3-203ENST00000586457 MBTD1Q05BQ5 628 aa12.02□□□□□ -0.49
CLIP3-203ENST00000586457 DMP1Q13316 513 aaPredicted RBP12.02□□□□□ -0.49
CLIP3-203ENST00000586457 DHX8Q14562 1220 aaKnown RBP12.02□□□□□ -0.49
CLIP3-203ENST00000586457 STK38Q15208 465 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms