RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 FOXD4L6Q3SYB3 417 aaPredicted RBP21.59■■□□□ 1.05
SS18-209ENST00000578595 FOXD4L3Q6VB84 417 aaPredicted RBP21.59■■□□□ 1.05
SS18-209ENST00000578595 ZNF689Q96CS4 500 aaPredicted RBP21.59■■□□□ 1.05
SS18-209ENST00000578595 IFT74Q96LB3 600 aa21.59■■□□□ 1.05
SS18-209ENST00000578595 ELAC1Q9H777 363 aaKnown RBP21.59■■□□□ 1.05
SS18-209ENST00000578595 AGPAT5Q9NUQ2 364 aa21.59■■□□□ 1.05
SS18-209ENST00000578595 MRPL42Q9Y6G3 142 aaKnown RBP21.59■■□□□ 1.05
SS18-209ENST00000578595 TRANK1O15050 2925 aa21.59■■□□□ 1.05
SS18-209ENST00000578595 LONP1P36776 959 aaKnown RBP21.58■■□□□ 1.05
SS18-209ENST00000578595 GRIN1Q05586 938 aa21.58■■□□□ 1.05
SS18-209ENST00000578595 GPM6BQ13491 265 aa21.58■■□□□ 1.05
SS18-209ENST00000578595 DHX8Q14562 1220 aaKnown RBP21.58■■□□□ 1.05
SS18-209ENST00000578595 PPP2R5AQ15172 486 aa21.58■■□□□ 1.05
SS18-209ENST00000578595 STK38Q15208 465 aa21.58■■□□□ 1.05
SS18-209ENST00000578595 KCNK18Q7Z418 384 aa21.58■■□□□ 1.05
SS18-209ENST00000578595 DEPTORQ8TB45 409 aa21.58■■□□□ 1.05
SS18-209ENST00000578595 USP28Q96RU2 1077 aa21.58■■□□□ 1.05
SS18-209ENST00000578595 SKIP12755 728 aa21.57■■□□□ 1.04
SS18-209ENST00000578595 RAB27AP51159 221 aa21.57■■□□□ 1.04
SS18-209ENST00000578595 RAD51AP2Q09MP3 1159 aa21.57■■□□□ 1.04
SS18-209ENST00000578595 HELQQ8TDG4 1101 aa21.57■■□□□ 1.04
SS18-209ENST00000578595 KIFAP3Q92845 792 aa21.57■■□□□ 1.04
SS18-209ENST00000578595 CPB2Q96IY4 423 aa21.57■■□□□ 1.04
SS18-209ENST00000578595 ZNF396Q96N95 335 aaPredicted RBP21.57■■□□□ 1.04
SS18-209ENST00000578595 PNMA5Q96PV4 448 aa21.57■■□□□ 1.04
SS18-209ENST00000578595 FAM105AQ9NUU6 356 aa21.57■■□□□ 1.04
SS18-209ENST00000578595 A0A0U1RQF3 1178 aa21.56■■□□□ 1.04
SS18-209ENST00000578595 TSPAN1O60635 241 aa21.56■■□□□ 1.04
SS18-209ENST00000578595 TXLNAP40222 546 aa21.56■■□□□ 1.04
SS18-209ENST00000578595 MBTD1Q05BQ5 628 aa21.56■■□□□ 1.04
SS18-209ENST00000578595 BECN1Q14457 450 aa21.56■■□□□ 1.04
SS18-209ENST00000578595 KARSQ15046 597 aaKnown RBP21.56■■□□□ 1.04
SS18-209ENST00000578595 SPECC1Q5M775 1068 aa21.56■■□□□ 1.04
SS18-209ENST00000578595 NOTUMQ6P988 496 aa21.56■■□□□ 1.04
SS18-209ENST00000578595 CRIPAKQ8N1N5 446 aa21.56■■□□□ 1.04
SS18-209ENST00000578595 BSNDQ8WZ55 320 aa21.56■■□□□ 1.04
SS18-209ENST00000578595 LPPQ93052 612 aa21.56■■□□□ 1.04
SS18-209ENST00000578595 C11orf84Q9BUA3 381 aaPredicted RBP21.56■■□□□ 1.04
SS18-209ENST00000578595 RUSC1Q9BVN2 902 aa21.56■■□□□ 1.04
SS18-209ENST00000578595 TRIM6Q9C030 488 aaPredicted RBP21.56■■□□□ 1.04
SS18-209ENST00000578595 TMEM117Q9H0C3 514 aa21.56■■□□□ 1.04
SS18-209ENST00000578595 CSRNP2Q9H175 543 aa21.56■■□□□ 1.04
SS18-209ENST00000578595 C2orf40Q9H1Z8 148 aa21.56■■□□□ 1.04
SS18-209ENST00000578595 DAXXQ9UER7 740 aaPredicted RBP21.56■■□□□ 1.04
SS18-209ENST00000578595 INPP5FQ9Y2H2 1132 aa21.56■■□□□ 1.04
SS18-209ENST00000578595 CCDC169A6NNP5 214 aa21.55■■□□□ 1.04
SS18-209ENST00000578595 HIP1RO75146 1068 aa21.55■■□□□ 1.04
SS18-209ENST00000578595 F13A1P00488 732 aa21.55■■□□□ 1.04
SS18-209ENST00000578595 ZSCAN22P10073 491 aaPredicted RBP21.55■■□□□ 1.04
SS18-209ENST00000578595 PDIA4P13667 645 aaKnown RBP21.55■■□□□ 1.04
SS18-209ENST00000578595 BMPR1AP36894 532 aa21.55■■□□□ 1.04
SS18-209ENST00000578595 FAM189BP81408 668 aa21.55■■□□□ 1.04
SS18-209ENST00000578595 POU5F1BQ06416 359 aa21.55■■□□□ 1.04
SS18-209ENST00000578595 PTPAQ15257 358 aa21.55■■□□□ 1.04
SS18-209ENST00000578595 HYIQ5T013 277 aa21.55■■□□□ 1.04
SS18-209ENST00000578595 DRC1Q96MC2 740 aa21.55■■□□□ 1.04
SS18-209ENST00000578595 AAASQ9NRG9 546 aa21.55■■□□□ 1.04
SS18-209ENST00000578595 PCDHB2Q9Y5E7 798 aa21.55■■□□□ 1.04
SS18-209ENST00000578595 MTCH2Q9Y6C9 303 aa21.55■■□□□ 1.04
SS18-209ENST00000578595 TCHHQ07283 1943 aa21.55■■□□□ 1.04
SS18-209ENST00000578595 BRWD1Q9NSI6 2320 aa21.54■■□□□ 1.04
SS18-209ENST00000578595 LPXNO60711 386 aa21.54■■□□□ 1.04
SS18-209ENST00000578595 EOMESO95936 686 aa21.54■■□□□ 1.04
SS18-209ENST00000578595 PLA2G4BP0C869 781 aa21.54■■□□□ 1.04
SS18-209ENST00000578595 PLCG1P19174 1290 aa21.54■■□□□ 1.04
SS18-209ENST00000578595 AXLP30530 894 aa21.54■■□□□ 1.04
SS18-209ENST00000578595 NAMPTP43490 491 aa21.54■■□□□ 1.04
SS18-209ENST00000578595 PCBP1Q15365 356 aaKnown RBP eCLIP21.54■■□□□ 1.04
SS18-209ENST00000578595 PTPROQ16827 1216 aa21.54■■□□□ 1.04
SS18-209ENST00000578595 TMEM119Q4V9L6 283 aa21.54■■□□□ 1.04
SS18-209ENST00000578595 RINT1Q6NUQ1 792 aa21.54■■□□□ 1.04
SS18-209ENST00000578595 LRRC43Q8N309 656 aa21.54■■□□□ 1.04
SS18-209ENST00000578595 SLC17A8Q8NDX2 589 aa21.54■■□□□ 1.04
SS18-209ENST00000578595 PGBD4Q96DM1 585 aa21.54■■□□□ 1.04
SS18-209ENST00000578595 CLIC6Q96NY7 704 aa21.54■■□□□ 1.04
SS18-209ENST00000578595 KIFC3Q9BVG8 833 aa21.54■■□□□ 1.04
SS18-209ENST00000578595 PRMT7Q9NVM4 692 aaPredicted RBP21.54■■□□□ 1.04
SS18-209ENST00000578595 TFIP11Q9UBB9 837 aaKnown RBP21.54■■□□□ 1.04
SS18-209ENST00000578595 HCSTQ9UBK5 93 aa21.54■■□□□ 1.04
SS18-209ENST00000578595 FBXO2Q9UK22 296 aaPredicted RBP21.54■■□□□ 1.04
SS18-209ENST00000578595 COL6A3P12111 3177 aa21.54■■□□□ 1.04
SS18-209ENST00000578595 H3BNC9 293 aa21.53■■□□□ 1.04
SS18-209ENST00000578595 B4GALT5O43286 388 aa21.53■■□□□ 1.04
SS18-209ENST00000578595 KRT18P05783 430 aaKnown RBP21.53■■□□□ 1.04
SS18-209ENST00000578595 ATF7P17544 494 aaPredicted RBP21.53■■□□□ 1.04
SS18-209ENST00000578595 PEX3P56589 373 aa21.53■■□□□ 1.04
SS18-209ENST00000578595 DMP1Q13316 513 aaPredicted RBP21.53■■□□□ 1.04
SS18-209ENST00000578595 CLLU1OSQ5K130 101 aa21.53■■□□□ 1.04
SS18-209ENST00000578595 GLB1LQ6UWU2 654 aa21.53■■□□□ 1.04
SS18-209ENST00000578595 CDR2LQ86X02 465 aaPredicted RBP21.53■■□□□ 1.04
SS18-209ENST00000578595 IFNLR1Q8IU57 520 aaPredicted RBP21.53■■□□□ 1.04
SS18-209ENST00000578595 CLP1Q92989 425 aaKnown RBP21.53■■□□□ 1.04
SS18-209ENST00000578595 APOL6Q9BWW8 343 aa21.53■■□□□ 1.04
SS18-209ENST00000578595 NFKBIZQ9BYH8 718 aa21.53■■□□□ 1.04
SS18-209ENST00000578595 TYW1Q9NV66 732 aaKnown RBP21.53■■□□□ 1.04
SS18-209ENST00000578595 CCDC39Q9UFE4 941 aa21.53■■□□□ 1.04
SS18-209ENST00000578595 PCDHB12Q9Y5F1 795 aa21.53■■□□□ 1.04
SS18-209ENST00000578595 SRPRBQ9Y5M8 271 aaKnown RBP21.53■■□□□ 1.04
SS18-209ENST00000578595 TRIP11Q15643 1979 aa21.52■■□□□ 1.04
SS18-209ENST00000578595 SLC26A4O43511 780 aa21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms