RNA–Protein interactions for RNA: ENST00000571409.1

CTDNEP1-206, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 5

Gene CTDNEP1, Length 741 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-206ENST00000571409 LPPQ93052 612 aa33.78■■■■□ 3
CTDNEP1-206ENST00000571409 TUFT1Q9NNX1 390 aa33.78■■■■□ 3
CTDNEP1-206ENST00000571409 TLR9Q9NR96 1032 aa33.78■■■■□ 3
CTDNEP1-206ENST00000571409 PCDHGC5Q9Y5F6 944 aa33.78■■■■□ 3
CTDNEP1-206ENST00000571409 MED24O75448 989 aa33.77■■■■□ 3
CTDNEP1-206ENST00000571409 IL9P15248 144 aa33.77■■■■□ 3
CTDNEP1-206ENST00000571409 U2AF2P26368 475 aaKnown RBP eCLIP33.77■■■■□ 3
CTDNEP1-206ENST00000571409 RAB27AP51159 221 aa33.77■■■■□ 3
CTDNEP1-206ENST00000571409 NBR1Q14596 966 aa33.77■■■■□ 3
CTDNEP1-206ENST00000571409 PUS10Q3MIT2 529 aaKnown RBP33.77■■■■□ 3
CTDNEP1-206ENST00000571409 CATSPER3Q86XQ3 398 aa33.77■■■■□ 3
CTDNEP1-206ENST00000571409 MICAL1Q8TDZ2 1067 aa33.77■■■■□ 3
CTDNEP1-206ENST00000571409 TMX3Q96JJ7 454 aa33.77■■■■□ 3
CTDNEP1-206ENST00000571409 ZNF558Q96NG5 402 aa33.77■■■■□ 3
CTDNEP1-206ENST00000571409 MRPL9Q9BYD2 267 aaKnown RBP33.77■■■■□ 3
CTDNEP1-206ENST00000571409 LINC01565O15544 149 aa33.76■■■□□ 2.99
CTDNEP1-206ENST00000571409 CD2BP2O95400 341 aaKnown RBP33.76■■■□□ 2.99
CTDNEP1-206ENST00000571409 XRCC6P12956 609 aaKnown RBP eCLIP33.76■■■□□ 2.99
CTDNEP1-206ENST00000571409 PBX3P40426 434 aa33.76■■■□□ 2.99
CTDNEP1-206ENST00000571409 KIF3AQ9Y496 699 aa33.76■■■□□ 2.99
CTDNEP1-206ENST00000571409 GRXCR2A6NFK2 248 aa33.75■■■□□ 2.99
CTDNEP1-206ENST00000571409 USO1O60763 962 aaKnown RBP33.75■■■□□ 2.99
CTDNEP1-206ENST00000571409 PLCB3Q01970 1234 aa33.75■■■□□ 2.99
CTDNEP1-206ENST00000571409 DLX2Q07687 328 aaPredicted RBP33.75■■■□□ 2.99
CTDNEP1-206ENST00000571409 TFDP1Q14186 410 aa33.75■■■□□ 2.99
CTDNEP1-206ENST00000571409 ERMNQ8TAM6 284 aa33.75■■■□□ 2.99
CTDNEP1-206ENST00000571409 MRPS27Q92552 414 aaKnown RBP33.75■■■□□ 2.99
CTDNEP1-206ENST00000571409 POLR3CQ9BUI4 534 aaPredicted RBP33.75■■■□□ 2.99
CTDNEP1-206ENST00000571409 MEIS3P2A8K0S8 358 aa33.74■■■□□ 2.99
CTDNEP1-206ENST00000571409 ZNF623O75123 536 aa33.74■■■□□ 2.99
CTDNEP1-206ENST00000571409 HOXA11P31270 313 aaPredicted RBP33.74■■■□□ 2.99
CTDNEP1-206ENST00000571409 PPM1AP35813 382 aa33.74■■■□□ 2.99
CTDNEP1-206ENST00000571409 NRIP1P48552 1158 aa33.74■■■□□ 2.99
CTDNEP1-206ENST00000571409 ERVFC1P60507 584 aa33.74■■■□□ 2.99
CTDNEP1-206ENST00000571409 ADAM15Q13444 863 aa33.74■■■□□ 2.99
CTDNEP1-206ENST00000571409 RBM23Q86U06 439 aaKnown RBP33.74■■■□□ 2.99
CTDNEP1-206ENST00000571409 ASAP3Q8TDY4 903 aa33.74■■■□□ 2.99
CTDNEP1-206ENST00000571409 LZTS1Q9Y250 596 aa33.74■■■□□ 2.99
CTDNEP1-206ENST00000571409 TBX10O75333 385 aa33.73■■■□□ 2.99
CTDNEP1-206ENST00000571409 ERLIN2O94905 339 aa33.73■■■□□ 2.99
CTDNEP1-206ENST00000571409 ARL2P36404 184 aa33.73■■■□□ 2.99
CTDNEP1-206ENST00000571409 PTENP60484 403 aa33.73■■■□□ 2.99
CTDNEP1-206ENST00000571409 CAPSQ13938 189 aa33.73■■■□□ 2.99
CTDNEP1-206ENST00000571409 C4orf32Q8N8J7 132 aa33.73■■■□□ 2.99
CTDNEP1-206ENST00000571409 RSPH1Q8WYR4 309 aa33.73■■■□□ 2.99
CTDNEP1-206ENST00000571409 TBC1D32Q96NH3 1257 aa33.73■■■□□ 2.99
CTDNEP1-206ENST00000571409 PUF60Q9UHX1 559 aaKnown RBP33.73■■■□□ 2.99
CTDNEP1-206ENST00000571409 PCDHB2Q9Y5E7 798 aa33.73■■■□□ 2.99
CTDNEP1-206ENST00000571409 RPA1P27694 616 aa33.72■■■□□ 2.99
CTDNEP1-206ENST00000571409 TOB1P50616 345 aaPredicted RBP33.72■■■□□ 2.99
CTDNEP1-206ENST00000571409 POU5F1BQ06416 359 aa33.72■■■□□ 2.99
CTDNEP1-206ENST00000571409 CLUL1Q15846 466 aa33.72■■■□□ 2.99
CTDNEP1-206ENST00000571409 POTEGQ6S5H5 508 aa33.72■■■□□ 2.99
CTDNEP1-206ENST00000571409 GLB1LQ6UWU2 654 aa33.72■■■□□ 2.99
CTDNEP1-206ENST00000571409 FAM178BQ8IXR5 827 aa33.72■■■□□ 2.99
CTDNEP1-206ENST00000571409 EFHBQ8N7U6 833 aa33.72■■■□□ 2.99
CTDNEP1-206ENST00000571409 PGBD4Q96DM1 585 aa33.72■■■□□ 2.99
CTDNEP1-206ENST00000571409 NACC1Q96RE7 527 aa33.72■■■□□ 2.99
CTDNEP1-206ENST00000571409 POLR3FQ9H1D9 316 aaPredicted RBP33.72■■■□□ 2.99
CTDNEP1-206ENST00000571409 SPG21Q9NZD8 308 aa33.72■■■□□ 2.99
CTDNEP1-206ENST00000571409 DBR1Q9UK59 544 aaKnown RBP33.72■■■□□ 2.99
CTDNEP1-206ENST00000571409 GLRA2P23416 452 aa33.71■■■□□ 2.99
CTDNEP1-206ENST00000571409 NDUFV1P49821 464 aa33.71■■■□□ 2.99
CTDNEP1-206ENST00000571409 PCBP1Q15365 356 aaKnown RBP eCLIP33.71■■■□□ 2.993e-14■■■■■ 49.4
CTDNEP1-206ENST00000571409 PDE12Q6L8Q7 609 aaKnown RBP33.71■■■□□ 2.99
CTDNEP1-206ENST00000571409 IFNLR1Q8IU57 520 aaPredicted RBP33.71■■■□□ 2.99
CTDNEP1-206ENST00000571409 TLE6Q9H808 572 aa33.71■■■□□ 2.99
CTDNEP1-206ENST00000571409 FAM50BQ9Y247 325 aa33.71■■■□□ 2.99
CTDNEP1-206ENST00000571409 INPP5FQ9Y2H2 1132 aa33.71■■■□□ 2.99
CTDNEP1-206ENST00000571409 PCDHB6Q9Y5E3 794 aa33.71■■■□□ 2.99
CTDNEP1-206ENST00000571409 INO80B-WBP1J3KQ70 363 aa33.7■■■□□ 2.99
CTDNEP1-206ENST00000571409 FSCN2O14926 492 aa33.7■■■□□ 2.99
CTDNEP1-206ENST00000571409 MCM2P49736 904 aa33.7■■■□□ 2.99
CTDNEP1-206ENST00000571409 FXR2P51116 673 aaKnown RBP eCLIP33.7■■■□□ 2.99
CTDNEP1-206ENST00000571409 BCAR1P56945 870 aa33.7■■■□□ 2.99
CTDNEP1-206ENST00000571409 KRT17Q04695 432 aa33.7■■■□□ 2.99
CTDNEP1-206ENST00000571409 NOMO2Q5JPE7 1267 aa33.7■■■□□ 2.99
CTDNEP1-206ENST00000571409 UBXN11Q5T124 520 aa33.7■■■□□ 2.99
CTDNEP1-206ENST00000571409 HAUS3Q68CZ6 603 aa33.7■■■□□ 2.99
CTDNEP1-206ENST00000571409 MAEAQ7L5Y9 396 aa33.7■■■□□ 2.99
CTDNEP1-206ENST00000571409 SLC39A11Q8N1S5 342 aa33.7■■■□□ 2.99
CTDNEP1-206ENST00000571409 TSPAN1O60635 241 aa33.69■■■□□ 2.98
CTDNEP1-206ENST00000571409 OFD1O75665 1012 aa33.69■■■□□ 2.98
CTDNEP1-206ENST00000571409 GJB2P29033 226 aa33.69■■■□□ 2.98
CTDNEP1-206ENST00000571409 ALDH7A1P49419 539 aaKnown RBP33.69■■■□□ 2.98
CTDNEP1-206ENST00000571409 PTGDRQ13258 359 aa33.69■■■□□ 2.98
CTDNEP1-206ENST00000571409 PLPP4Q5VZY2 271 aa33.69■■■□□ 2.98
CTDNEP1-206ENST00000571409 MCTP1Q6DN14 999 aa33.69■■■□□ 2.98
CTDNEP1-206ENST00000571409 MRPL10Q7Z7H8 261 aaKnown RBP33.69■■■□□ 2.98
CTDNEP1-206ENST00000571409 TCF25Q9BQ70 676 aa33.69■■■□□ 2.98
CTDNEP1-206ENST00000571409 GPRC5CQ9NQ84 441 aa33.69■■■□□ 2.98
CTDNEP1-206ENST00000571409 ENTPD7Q9NQZ7 604 aa33.69■■■□□ 2.98
CTDNEP1-206ENST00000571409 TBC1D13Q9NVG8 400 aa33.69■■■□□ 2.98
CTDNEP1-206ENST00000571409 NT5C1B-RDH14C9J2C7 533 aa33.68■■■□□ 2.98
CTDNEP1-206ENST00000571409 PER2O15055 1255 aa33.68■■■□□ 2.98
CTDNEP1-206ENST00000571409 ZC3H11AO75152 810 aaKnown RBP eCLIP33.68■■■□□ 2.98
CTDNEP1-206ENST00000571409 AXLP30530 894 aa33.68■■■□□ 2.98
CTDNEP1-206ENST00000571409 MBTD1Q05BQ5 628 aa33.68■■■□□ 2.98
CTDNEP1-206ENST00000571409 AGMOQ6ZNB7 445 aa33.68■■■□□ 2.98
CTDNEP1-206ENST00000571409 MCPH1Q8NEM0 835 aa33.68■■■□□ 2.98
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms