RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 LTB4R2Q9NPC1 389 aa20.53■□□□□ 0.88
CLK3-227ENST00000570296 PCDHA6Q9UN73 950 aa20.53■□□□□ 0.88
CLK3-227ENST00000570296 AKT3Q9Y243 479 aa20.53■□□□□ 0.88
CLK3-227ENST00000570296 SSX2IPQ9Y2D8 614 aa20.53■□□□□ 0.88
CLK3-227ENST00000570296 PCDHA8Q9Y5H6 950 aa20.53■□□□□ 0.88
CLK3-227ENST00000570296 COL4A3Q01955 1670 aa20.53■□□□□ 0.88
CLK3-227ENST00000570296 MAGEB2O15479 319 aa20.52■□□□□ 0.88
CLK3-227ENST00000570296 RFPL2O75678 378 aa20.52■□□□□ 0.88
CLK3-227ENST00000570296 CCNE2O96020 404 aa20.52■□□□□ 0.88
CLK3-227ENST00000570296 DARSP14868 501 aaKnown RBP20.52■□□□□ 0.88
CLK3-227ENST00000570296 SDSP20132 328 aa20.52■□□□□ 0.88
CLK3-227ENST00000570296 SMARCA1P28370 1054 aa20.52■□□□□ 0.88
CLK3-227ENST00000570296 PHKA2P46019 1235 aa20.52■□□□□ 0.88
CLK3-227ENST00000570296 RPS9P46781 194 aaKnown RBP20.52■□□□□ 0.88
CLK3-227ENST00000570296 CLCN3P51790 818 aa20.52■□□□□ 0.88
CLK3-227ENST00000570296 SLC44A4Q53GD3 710 aa20.52■□□□□ 0.88
CLK3-227ENST00000570296 ZBTB41Q5SVQ8 909 aa20.52■□□□□ 0.88
CLK3-227ENST00000570296 GET4Q7L5D6 327 aaPredicted RBP20.52■□□□□ 0.88
CLK3-227ENST00000570296 PHKBQ93100 1093 aa20.52■□□□□ 0.88
CLK3-227ENST00000570296 PIDD1Q9HB75 910 aa20.52■□□□□ 0.88
CLK3-227ENST00000570296 AGO4Q9HCK5 861 aaKnown RBP20.52■□□□□ 0.88
CLK3-227ENST00000570296 CHST12Q9NRB3 414 aa20.52■□□□□ 0.88
CLK3-227ENST00000570296 DNAJB4Q9UDY4 337 aa20.52■□□□□ 0.88
CLK3-227ENST00000570296 CEP131Q9UPN4 1083 aa20.52■□□□□ 0.88
CLK3-227ENST00000570296 ERICH2A1L162 156 aa20.51■□□□□ 0.87
CLK3-227ENST00000570296 IFIT3O14879 490 aaKnown RBP20.51■□□□□ 0.87
CLK3-227ENST00000570296 FOXD2O60548 495 aaPredicted RBP20.51■□□□□ 0.87
CLK3-227ENST00000570296 C1RP00736 705 aa20.51■□□□□ 0.87
CLK3-227ENST00000570296 URODP06132 367 aa20.51■□□□□ 0.87
CLK3-227ENST00000570296 SKIP12755 728 aa20.51■□□□□ 0.87
CLK3-227ENST00000570296 ATP4AP20648 1035 aa20.51■□□□□ 0.87
CLK3-227ENST00000570296 TMOD1P28289 359 aa20.51■□□□□ 0.87
CLK3-227ENST00000570296 PFKPQ01813 784 aa20.51■□□□□ 0.87
CLK3-227ENST00000570296 UBE2SQ16763 222 aa20.51■□□□□ 0.87
CLK3-227ENST00000570296 TSSK4Q6SA08 328 aa20.51■□□□□ 0.87
CLK3-227ENST00000570296 CELF5Q8N6W0 485 aaKnown RBP20.51■□□□□ 0.87
CLK3-227ENST00000570296 LINC01465Q8N7H1 131 aa20.51■□□□□ 0.87
CLK3-227ENST00000570296 RPS6KC1Q96S38 1066 aa20.51■□□□□ 0.87
CLK3-227ENST00000570296 NCAM2O15394 837 aa20.5■□□□□ 0.87
CLK3-227ENST00000570296 KCNA4P22459 653 aa20.5■□□□□ 0.87
CLK3-227ENST00000570296 KIF5BP33176 963 aa20.5■□□□□ 0.87
CLK3-227ENST00000570296 NRLP54845 237 aa20.5■□□□□ 0.87
CLK3-227ENST00000570296 CSRP2Q16527 193 aa20.5■□□□□ 0.87
CLK3-227ENST00000570296 MIS18BP1Q6P0N0 1132 aa20.5■□□□□ 0.87
CLK3-227ENST00000570296 PRR23CQ6ZRP0 262 aa20.5■□□□□ 0.87
CLK3-227ENST00000570296 CATIPQ7Z7H3 387 aa20.5■□□□□ 0.87
CLK3-227ENST00000570296 CKAP2LQ8IYA6 745 aa20.5■□□□□ 0.87
CLK3-227ENST00000570296 RILPL2Q969X0 211 aa20.5■□□□□ 0.87
CLK3-227ENST00000570296 NELL2Q99435 816 aa20.5■□□□□ 0.87
CLK3-227ENST00000570296 RPP25Q9BUL9 199 aaKnown RBP20.5■□□□□ 0.87
CLK3-227ENST00000570296 NT5C3AQ9H0P0 336 aa20.5■□□□□ 0.87
CLK3-227ENST00000570296 GBP3Q9H0R5 595 aa20.5■□□□□ 0.87
CLK3-227ENST00000570296 PLEKHA4Q9H4M7 779 aa20.5■□□□□ 0.87
CLK3-227ENST00000570296 SENP2Q9HC62 589 aa20.5■□□□□ 0.87
CLK3-227ENST00000570296 SEMA4GQ9NTN9 838 aa20.5■□□□□ 0.87
CLK3-227ENST00000570296 ZDHHC7Q9NXF8 308 aa20.5■□□□□ 0.87
CLK3-227ENST00000570296 INPP5FQ9Y2H2 1132 aa20.5■□□□□ 0.87
CLK3-227ENST00000570296 DOCK6Q96HP0 2047 aa20.49■□□□□ 0.87
CLK3-227ENST00000570296 TEX28O15482 410 aa20.49■□□□□ 0.87
CLK3-227ENST00000570296 SOD2P04179 222 aa20.49■□□□□ 0.87
CLK3-227ENST00000570296 AK2P54819 239 aa20.49■□□□□ 0.87
CLK3-227ENST00000570296 TRDNQ13061 729 aa20.49■□□□□ 0.87
CLK3-227ENST00000570296 CEP55Q53EZ4 464 aa20.49■□□□□ 0.87
CLK3-227ENST00000570296 N4BP2L1Q5TBK1 243 aaPredicted RBP20.49■□□□□ 0.87
CLK3-227ENST00000570296 SWSAP1Q6NVH7 229 aa20.49■□□□□ 0.87
CLK3-227ENST00000570296 EFCAB12Q6NXP0 572 aa20.49■□□□□ 0.87
CLK3-227ENST00000570296 FGF14Q92915 247 aa20.49■□□□□ 0.87
CLK3-227ENST00000570296 MAP3K14Q99558 947 aa20.49■□□□□ 0.87
CLK3-227ENST00000570296 MYL10Q9BUA6 226 aa20.49■□□□□ 0.87
CLK3-227ENST00000570296 C2CD2LO14523 706 aa20.48■□□□□ 0.87
CLK3-227ENST00000570296 OFD1O75665 1012 aa20.48■□□□□ 0.87
CLK3-227ENST00000570296 GPC3P51654 580 aa20.48■□□□□ 0.87
CLK3-227ENST00000570296 ANKRD45Q5TZF3 282 aa20.48■□□□□ 0.87
CLK3-227ENST00000570296 PARM1Q6UWI2 310 aa20.48■□□□□ 0.87
CLK3-227ENST00000570296 CWC27Q6UX04 472 aaKnown RBP20.48■□□□□ 0.87
CLK3-227ENST00000570296 MTSS1LQ765P7 747 aa20.48■□□□□ 0.87
CLK3-227ENST00000570296 LPPQ93052 612 aa20.48■□□□□ 0.87
CLK3-227ENST00000570296 SCLT1Q96NL6 688 aa20.48■□□□□ 0.87
CLK3-227ENST00000570296 LZTS2Q9BRK4 669 aa20.48■□□□□ 0.87
CLK3-227ENST00000570296 TMEM175Q9BSA9 504 aa20.48■□□□□ 0.87
CLK3-227ENST00000570296 HERC2P3Q9BVR0 1158 aa20.48■□□□□ 0.87
CLK3-227ENST00000570296 PRKD2Q9BZL6 878 aa20.48■□□□□ 0.87
CLK3-227ENST00000570296 RXFP1Q9HBX9 757 aa20.48■□□□□ 0.87
CLK3-227ENST00000570296 MAFBQ9Y5Q3 323 aaPredicted RBP20.48■□□□□ 0.87
CLK3-227ENST00000570296 WDR81Q562E7 1941 aa20.47■□□□□ 0.87
CLK3-227ENST00000570296 GCN1Q92616 2671 aaKnown RBP20.47■□□□□ 0.87
CLK3-227ENST00000570296 DDX39AO00148 427 aaKnown RBP20.47■□□□□ 0.87
CLK3-227ENST00000570296 MEIS1O00470 390 aa20.47■□□□□ 0.87
CLK3-227ENST00000570296 B4GALT3O60512 393 aa20.47■□□□□ 0.87
CLK3-227ENST00000570296 TDGF1P13385 188 aa20.47■□□□□ 0.87
CLK3-227ENST00000570296 FGFR4P22455 802 aa20.47■□□□□ 0.87
CLK3-227ENST00000570296 SART3Q15020 963 aaKnown RBP20.47■□□□□ 0.87
CLK3-227ENST00000570296 LPAL2Q16609 132 aa20.47■□□□□ 0.87
CLK3-227ENST00000570296 IL31Q6EBC2 164 aa20.47■□□□□ 0.87
CLK3-227ENST00000570296 ZNF280BQ86YH2 543 aa20.47■□□□□ 0.87
CLK3-227ENST00000570296 ST13P5Q8NFI4 369 aaPredicted RBP20.47■□□□□ 0.87
CLK3-227ENST00000570296 LY9Q9HBG7 655 aa20.47■□□□□ 0.87
CLK3-227ENST00000570296 RCAN3Q9UKA8 241 aa20.47■□□□□ 0.87
CLK3-227ENST00000570296 PCDHB15Q9Y5E8 787 aa20.47■□□□□ 0.87
CLK3-227ENST00000570296 F5P12259 2224 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms