RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 TMEM173Q86WV6 379 aaPredicted RBP16.73■□□□□ 0.27
CLN3-236ENST00000568558 FAM20AQ96MK3 541 aa16.73■□□□□ 0.27
CLN3-236ENST00000568558 ZBP1Q9H171 429 aa16.73■□□□□ 0.27
CLN3-236ENST00000568558 IFT122Q9HBG6 1241 aa16.73■□□□□ 0.27
CLN3-236ENST00000568558 TBC1D13Q9NVG8 400 aa16.73■□□□□ 0.27
CLN3-236ENST00000568558 CDH22Q9UJ99 828 aa16.73■□□□□ 0.27
CLN3-236ENST00000568558 MEIS3P2A8K0S8 358 aa16.72■□□□□ 0.27
CLN3-236ENST00000568558 DKC1O60832 514 aaKnown RBP eCLIP16.72■□□□□ 0.27
CLN3-236ENST00000568558 ZNF623O75123 536 aa16.72■□□□□ 0.27
CLN3-236ENST00000568558 CDKL5O76039 1030 aa16.72■□□□□ 0.27
CLN3-236ENST00000568558 GCFC2P16383 781 aaKnown RBP16.72■□□□□ 0.27
CLN3-236ENST00000568558 MRE11P49959 708 aa16.72■□□□□ 0.27
CLN3-236ENST00000568558 NPEPPSP55786 919 aa16.72■□□□□ 0.27
CLN3-236ENST00000568558 BMS1Q14692 1282 aaKnown RBP16.72■□□□□ 0.27
CLN3-236ENST00000568558 PTPN21Q16825 1174 aa16.72■□□□□ 0.27
CLN3-236ENST00000568558 LONRF3Q496Y0 759 aa16.72■□□□□ 0.27
CLN3-236ENST00000568558 TPRNQ4KMQ1 711 aa16.72■□□□□ 0.27
CLN3-236ENST00000568558 ERICH6BQ5W0A0 696 aa16.72■□□□□ 0.27
CLN3-236ENST00000568558 GLB1LQ6UWU2 654 aa16.72■□□□□ 0.27
CLN3-236ENST00000568558 SUGP1Q8IWZ8 645 aaKnown RBP16.72■□□□□ 0.27
CLN3-236ENST00000568558 DHX33Q9H6R0 707 aaKnown RBP16.72■□□□□ 0.27
CLN3-236ENST00000568558 NRDE2Q9H7Z3 1164 aa16.72■□□□□ 0.27
CLN3-236ENST00000568558 AGPAT5Q9NUQ2 364 aa16.72■□□□□ 0.27
CLN3-236ENST00000568558 WRAP73Q9P2S5 460 aaPredicted RBP16.72■□□□□ 0.27
CLN3-236ENST00000568558 COL4A3BPQ9Y5P4 624 aa16.72■□□□□ 0.27
CLN3-236ENST00000568558 CARNS1A5YM72 827 aa16.71■□□□□ 0.27
CLN3-236ENST00000568558 TBX3O15119 743 aa16.71■□□□□ 0.27
CLN3-236ENST00000568558 OFD1O75665 1012 aa16.71■□□□□ 0.27
CLN3-236ENST00000568558 CXCL14O95715 111 aa16.71■□□□□ 0.27
CLN3-236ENST00000568558 P4HBP07237 508 aaKnown RBP16.71■□□□□ 0.27
CLN3-236ENST00000568558 GALTP07902 379 aa16.71■□□□□ 0.27
CLN3-236ENST00000568558 SP100P23497 879 aaPredicted RBP16.71■□□□□ 0.27
CLN3-236ENST00000568558 CA8P35219 290 aa16.71■□□□□ 0.27
CLN3-236ENST00000568558 ITIH3Q06033 890 aa16.71■□□□□ 0.27
CLN3-236ENST00000568558 NOMO2Q5JPE7 1267 aa16.71■□□□□ 0.27
CLN3-236ENST00000568558 CES5AQ6NT32 575 aa16.71■□□□□ 0.27
CLN3-236ENST00000568558 VPS52Q8N1B4 723 aa16.71■□□□□ 0.27
CLN3-236ENST00000568558 FBXL6Q8N531 539 aa16.71■□□□□ 0.27
CLN3-236ENST00000568558 ZNF579Q8NAF0 562 aaKnown RBP16.71■□□□□ 0.27
CLN3-236ENST00000568558 PRSS33Q8NF86 280 aa16.71■□□□□ 0.27
CLN3-236ENST00000568558 SLC7A3Q8WY07 619 aa16.71■□□□□ 0.27
CLN3-236ENST00000568558 ASIC4Q96FT7 647 aa16.71■□□□□ 0.27
CLN3-236ENST00000568558 IGSF21Q96ID5 467 aa16.71■□□□□ 0.27
CLN3-236ENST00000568558 SLKQ9H2G2 1235 aaPredicted RBP16.71■□□□□ 0.27
CLN3-236ENST00000568558 ADAM7Q9H2U9 754 aa16.71■□□□□ 0.27
CLN3-236ENST00000568558 GJB4Q9NTQ9 266 aa16.71■□□□□ 0.27
CLN3-236ENST00000568558 INPP5FQ9Y2H2 1132 aa16.71■□□□□ 0.27
CLN3-236ENST00000568558 PPME1Q9Y570 386 aa16.71■□□□□ 0.27
CLN3-236ENST00000568558 IRAK3Q9Y616 596 aa16.71■□□□□ 0.27
CLN3-236ENST00000568558 PLXNA3P51805 1871 aa16.7■□□□□ 0.26
CLN3-236ENST00000568558 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.7■□□□□ 0.26
CLN3-236ENST00000568558 CCNT1O60563 726 aaKnown RBP16.7■□□□□ 0.26
CLN3-236ENST00000568558 CTSAP10619 480 aa16.7■□□□□ 0.26
CLN3-236ENST00000568558 XBP1P17861 261 aa16.7■□□□□ 0.26
CLN3-236ENST00000568558 POLGP54098 1239 aaPredicted RBP16.7■□□□□ 0.26
CLN3-236ENST00000568558 EPHA7Q15375 998 aa16.7■□□□□ 0.26
CLN3-236ENST00000568558 IER5LQ5T953 404 aa16.7■□□□□ 0.26
CLN3-236ENST00000568558 PIK3AP1Q6ZUJ8 805 aa16.7■□□□□ 0.26
CLN3-236ENST00000568558 DDX53Q86TM3 631 aaKnown RBP16.7■□□□□ 0.26
CLN3-236ENST00000568558 POTEDQ86YR6 584 aa16.7■□□□□ 0.26
CLN3-236ENST00000568558 C4orf19Q8IY42 314 aa16.7■□□□□ 0.26
CLN3-236ENST00000568558 EXOC8Q8IYI6 725 aa16.7■□□□□ 0.26
CLN3-236ENST00000568558 OXER1Q8TDS5 423 aa16.7■□□□□ 0.26
CLN3-236ENST00000568558 BCL7CQ8WUZ0 217 aaPredicted RBP16.7■□□□□ 0.26
CLN3-236ENST00000568558 AUTS2Q8WXX7 1259 aa16.7■□□□□ 0.26
CLN3-236ENST00000568558 HAS1Q92839 578 aa16.7■□□□□ 0.26
CLN3-236ENST00000568558 PGBD4Q96DM1 585 aa16.7■□□□□ 0.26
CLN3-236ENST00000568558 CEP170P1Q96L14 293 aa16.7■□□□□ 0.26
CLN3-236ENST00000568558 NECTIN4Q96NY8 510 aa16.7■□□□□ 0.26
CLN3-236ENST00000568558 NAP1L4Q99733 375 aaKnown RBP16.7■□□□□ 0.26
CLN3-236ENST00000568558 LXNQ9BS40 222 aa16.7■□□□□ 0.26
CLN3-236ENST00000568558 POMKQ9H5K3 350 aa16.7■□□□□ 0.26
CLN3-236ENST00000568558 DNAJB4Q9UDY4 337 aa16.7■□□□□ 0.26
CLN3-236ENST00000568558 NR2E1Q9Y466 385 aa16.7■□□□□ 0.26
CLN3-236ENST00000568558 PCDHB2Q9Y5E7 798 aa16.7■□□□□ 0.26
CLN3-236ENST00000568558 B4GALT3O60512 393 aa16.69■□□□□ 0.26
CLN3-236ENST00000568558 PFKFB2O60825 505 aa16.69■□□□□ 0.26
CLN3-236ENST00000568558 DTNBO60941 627 aa16.69■□□□□ 0.26
CLN3-236ENST00000568558 RFC5P40937 340 aa16.69■□□□□ 0.26
CLN3-236ENST00000568558 RNASELQ05823 741 aaKnown RBP16.69■□□□□ 0.26
CLN3-236ENST00000568558 GIT2Q14161 759 aa16.69■□□□□ 0.26
CLN3-236ENST00000568558 EARS2Q5JPH6 523 aaKnown RBP16.69■□□□□ 0.26
CLN3-236ENST00000568558 AGMOQ6ZNB7 445 aa16.69■□□□□ 0.26
CLN3-236ENST00000568558 SRGAP1Q7Z6B7 1085 aa16.69■□□□□ 0.26
CLN3-236ENST00000568558 PRPF31Q8WWY3 499 aaKnown RBP16.69■□□□□ 0.26
CLN3-236ENST00000568558 PSPC1Q8WXF1 523 aaKnown RBP16.69■□□□□ 0.26
CLN3-236ENST00000568558 TMEM143Q96AN5 459 aa16.69■□□□□ 0.26
CLN3-236ENST00000568558 GBP3Q9H0R5 595 aa16.69■□□□□ 0.26
CLN3-236ENST00000568558 MINDY3Q9H8M7 445 aa16.69■□□□□ 0.26
CLN3-236ENST00000568558 TSHZ2Q9NRE2 1034 aa16.69■□□□□ 0.26
CLN3-236ENST00000568558 DZANK1Q9NVP4 752 aa16.69■□□□□ 0.26
CLN3-236ENST00000568558 TPCN1Q9ULQ1 816 aa16.69■□□□□ 0.26
CLN3-236ENST00000568558 C2CD4DB7Z1M9 353 aa16.68■□□□□ 0.26
CLN3-236ENST00000568558 GAS2O43903 313 aaKnown RBP16.68■□□□□ 0.26
CLN3-236ENST00000568558 EPCAMP16422 314 aa16.68■□□□□ 0.26
CLN3-236ENST00000568558 YWHABP31946 246 aaKnown RBP16.68■□□□□ 0.26
CLN3-236ENST00000568558 MTHFRP42898 656 aa16.68■□□□□ 0.26
CLN3-236ENST00000568558 SLC11A1P49279 550 aa16.68■□□□□ 0.26
CLN3-236ENST00000568558 SPIRE1Q08AE8 756 aa16.68■□□□□ 0.26
CLN3-236ENST00000568558 LAMTOR4Q0VGL1 99 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms