RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 SYCE2Q6PIF2 218 aa18.86■□□□□ 0.61
CLN3-231ENST00000568422 TRIM67Q6ZTA4 783 aa18.86■□□□□ 0.61
CLN3-231ENST00000568422 OTUD6AQ7L8S5 288 aa18.86■□□□□ 0.61
CLN3-231ENST00000568422 C4orf19Q8IY42 314 aa18.86■□□□□ 0.61
CLN3-231ENST00000568422 SLFN12Q8IYM2 578 aa18.86■□□□□ 0.61
CLN3-231ENST00000568422 PGBD4Q96DM1 585 aa18.86■□□□□ 0.61
CLN3-231ENST00000568422 CEP170P1Q96L14 293 aa18.86■□□□□ 0.61
CLN3-231ENST00000568422 NLRP4Q96MN2 994 aa18.86■□□□□ 0.61
CLN3-231ENST00000568422 DHX33Q9H6R0 707 aaKnown RBP18.86■□□□□ 0.61
CLN3-231ENST00000568422 IFT122Q9HBG6 1241 aa18.86■□□□□ 0.61
CLN3-231ENST00000568422 STK39Q9UEW8 545 aa18.86■□□□□ 0.61
CLN3-231ENST00000568422 COL4A3BPQ9Y5P4 624 aa18.86■□□□□ 0.61
CLN3-231ENST00000568422 NPEPPSP55786 919 aa18.85■□□□□ 0.61
CLN3-231ENST00000568422 ITIH3Q06033 890 aa18.85■□□□□ 0.61
CLN3-231ENST00000568422 EPHA7Q15375 998 aa18.85■□□□□ 0.61
CLN3-231ENST00000568422 NOMO2Q5JPE7 1267 aa18.85■□□□□ 0.61
CLN3-231ENST00000568422 CES5AQ6NT32 575 aa18.85■□□□□ 0.61
CLN3-231ENST00000568422 LLGL2Q6P1M3 1020 aa18.85■□□□□ 0.61
CLN3-231ENST00000568422 PIK3AP1Q6ZUJ8 805 aa18.85■□□□□ 0.61
CLN3-231ENST00000568422 SRGAP1Q7Z6B7 1085 aa18.85■□□□□ 0.61
CLN3-231ENST00000568422 DDX53Q86TM3 631 aaKnown RBP18.85■□□□□ 0.61
CLN3-231ENST00000568422 KSR1Q8IVT5 923 aa18.85■□□□□ 0.61
CLN3-231ENST00000568422 TCP11Q8WWU5 503 aa18.85■□□□□ 0.61
CLN3-231ENST00000568422 PSPC1Q8WXF1 523 aaKnown RBP18.85■□□□□ 0.61
CLN3-231ENST00000568422 AGPAT5Q9NUQ2 364 aa18.85■□□□□ 0.61
CLN3-231ENST00000568422 TPCN1Q9ULQ1 816 aa18.85■□□□□ 0.61
CLN3-231ENST00000568422 IRAK3Q9Y616 596 aa18.85■□□□□ 0.61
CLN3-231ENST00000568422 TMEM221A6NGB7 291 aa18.84■□□□□ 0.61
CLN3-231ENST00000568422 M0R296 226 aa18.84■□□□□ 0.61
CLN3-231ENST00000568422 ASAP2O43150 1006 aa18.84■□□□□ 0.61
CLN3-231ENST00000568422 ZC3H11AO75152 810 aaKnown RBP eCLIP18.84■□□□□ 0.61
CLN3-231ENST00000568422 CXCL14O95715 111 aa18.84■□□□□ 0.61
CLN3-231ENST00000568422 RNASELQ05823 741 aaKnown RBP18.84■□□□□ 0.61
CLN3-231ENST00000568422 PRPF31Q8WWY3 499 aaKnown RBP18.84■□□□□ 0.61
CLN3-231ENST00000568422 HAS1Q92839 578 aa18.84■□□□□ 0.61
CLN3-231ENST00000568422 NECTIN4Q96NY8 510 aa18.84■□□□□ 0.61
CLN3-231ENST00000568422 BRMS1Q9HCU9 246 aa18.84■□□□□ 0.61
CLN3-231ENST00000568422 TBC1D13Q9NVG8 400 aa18.84■□□□□ 0.61
CLN3-231ENST00000568422 ORC3Q9UBD5 711 aaPredicted RBP18.84■□□□□ 0.61
CLN3-231ENST00000568422 NR2E1Q9Y466 385 aa18.84■□□□□ 0.61
CLN3-231ENST00000568422 HCFC2Q9Y5Z7 792 aa18.84■□□□□ 0.61
CLN3-231ENST00000568422 NT5C1B-RDH14C9J2C7 533 aa18.83■□□□□ 0.6
CLN3-231ENST00000568422 CLASP2O75122 1294 aaKnown RBP18.83■□□□□ 0.6
CLN3-231ENST00000568422 OFD1O75665 1012 aa18.83■□□□□ 0.6
CLN3-231ENST00000568422 YWHABP31946 246 aaKnown RBP18.83■□□□□ 0.6
CLN3-231ENST00000568422 SIGLEC14Q08ET2 396 aa18.83■□□□□ 0.6
CLN3-231ENST00000568422 PCBP1Q15365 356 aaKnown RBP eCLIP18.83■□□□□ 0.6
CLN3-231ENST00000568422 VPS52Q8N1B4 723 aa18.83■□□□□ 0.6
CLN3-231ENST00000568422 TMEM87AQ8NBN3 555 aa18.83■□□□□ 0.6
CLN3-231ENST00000568422 URGCPQ8TCY9 931 aa18.83■□□□□ 0.6
CLN3-231ENST00000568422 LPPQ93052 612 aa18.83■□□□□ 0.6
CLN3-231ENST00000568422 PBXIP1Q96AQ6 731 aa18.83■□□□□ 0.6
CLN3-231ENST00000568422 IGSF21Q96ID5 467 aa18.83■□□□□ 0.6
CLN3-231ENST00000568422 FBXL18Q96ME1 805 aa18.83■□□□□ 0.6
CLN3-231ENST00000568422 PRRX2Q99811 253 aa18.83■□□□□ 0.6
CLN3-231ENST00000568422 LXNQ9BS40 222 aa18.83■□□□□ 0.6
CLN3-231ENST00000568422 ADAM7Q9H2U9 754 aa18.83■□□□□ 0.6
CLN3-231ENST00000568422 ZSWIM4Q9H7M6 989 aa18.83■□□□□ 0.6
CLN3-231ENST00000568422 KANSL3Q9P2N6 904 aa18.83■□□□□ 0.6
CLN3-231ENST00000568422 WRAP73Q9P2S5 460 aaPredicted RBP18.83■□□□□ 0.6
CLN3-231ENST00000568422 PCDHB2Q9Y5E7 798 aa18.83■□□□□ 0.6
CLN3-231ENST00000568422 CNTNAP2Q9UHC6 1331 aa18.82■□□□□ 0.6
CLN3-231ENST00000568422 NEFLP07196 543 aa18.82■□□□□ 0.6
CLN3-231ENST00000568422 GALTP07902 379 aa18.82■□□□□ 0.6
CLN3-231ENST00000568422 CTSAP10619 480 aa18.82■□□□□ 0.6
CLN3-231ENST00000568422 LAMTOR4Q0VGL1 99 aa18.82■□□□□ 0.6
CLN3-231ENST00000568422 MRPL10Q7Z7H8 261 aaKnown RBP18.82■□□□□ 0.6
CLN3-231ENST00000568422 ZNF579Q8NAF0 562 aaKnown RBP18.82■□□□□ 0.6
CLN3-231ENST00000568422 OXER1Q8TDS5 423 aa18.82■□□□□ 0.6
CLN3-231ENST00000568422 ZBP1Q9H171 429 aa18.82■□□□□ 0.6
CLN3-231ENST00000568422 NRDE2Q9H7Z3 1164 aa18.82■□□□□ 0.6
CLN3-231ENST00000568422 DZANK1Q9NVP4 752 aa18.82■□□□□ 0.6
CLN3-231ENST00000568422 PIEZO1Q92508 2521 aa18.82■□□□□ 0.6
CLN3-231ENST00000568422 EIF5BO60841 1220 aaKnown RBP18.81■□□□□ 0.6
CLN3-231ENST00000568422 CTDNEP1O95476 244 aa18.81■□□□□ 0.6
CLN3-231ENST00000568422 SRGAP2CP0DJJ0 459 aa18.81■□□□□ 0.6
CLN3-231ENST00000568422 CA8P35219 290 aa18.81■□□□□ 0.6
CLN3-231ENST00000568422 KRT2P35908 639 aa18.81■□□□□ 0.6
CLN3-231ENST00000568422 MTHFRP42898 656 aa18.81■□□□□ 0.6
CLN3-231ENST00000568422 NHLH1Q02575 133 aa18.81■□□□□ 0.6
CLN3-231ENST00000568422 SPIRE1Q08AE8 756 aa18.81■□□□□ 0.6
CLN3-231ENST00000568422 MXD4Q14582 209 aaPredicted RBP18.81■□□□□ 0.6
CLN3-231ENST00000568422 PTPN21Q16825 1174 aa18.81■□□□□ 0.6
CLN3-231ENST00000568422 LONRF3Q496Y0 759 aa18.81■□□□□ 0.6
CLN3-231ENST00000568422 NCAPH2Q6IBW4 605 aa18.81■□□□□ 0.6
CLN3-231ENST00000568422 PPFIBP1Q86W92 1011 aa18.81■□□□□ 0.6
CLN3-231ENST00000568422 POTEDQ86YR6 584 aa18.81■□□□□ 0.6
CLN3-231ENST00000568422 SUGP1Q8IWZ8 645 aaKnown RBP18.81■□□□□ 0.6
CLN3-231ENST00000568422 CNNM3Q8NE01 707 aa18.81■□□□□ 0.6
CLN3-231ENST00000568422 TMEM143Q96AN5 459 aa18.81■□□□□ 0.6
CLN3-231ENST00000568422 APOL5Q9BWW9 433 aa18.81■□□□□ 0.6
CLN3-231ENST00000568422 UBN1Q9NPG3 1134 aa18.81■□□□□ 0.6
CLN3-231ENST00000568422 GJB4Q9NTQ9 266 aa18.81■□□□□ 0.6
CLN3-231ENST00000568422 RGL1Q9NZL6 768 aa18.81■□□□□ 0.6
CLN3-231ENST00000568422 INPP5FQ9Y2H2 1132 aa18.81■□□□□ 0.6
CLN3-231ENST00000568422 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.8■□□□□ 0.6
CLN3-231ENST00000568422 AK2P54819 239 aa18.8■□□□□ 0.6
CLN3-231ENST00000568422 EMC2Q15006 297 aa18.8■□□□□ 0.6
CLN3-231ENST00000568422 XKR9Q5GH70 373 aa18.8■□□□□ 0.6
CLN3-231ENST00000568422 AGMOQ6ZNB7 445 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms