RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 PADI6Q6TGC4 694 aa16.71■□□□□ 0.27
VPS39-210ENST00000568357 ZNF598Q86UK7 904 aaKnown RBP16.71■□□□□ 0.27
VPS39-210ENST00000568357 SNX21Q969T3 373 aa16.71■□□□□ 0.27
VPS39-210ENST00000568357 MMTAG2Q9BU76 263 aaKnown RBP16.71■□□□□ 0.27
VPS39-210ENST00000568357 DACT1Q9NYF0 836 aa16.71■□□□□ 0.27
VPS39-210ENST00000568357 HCSTQ9UBK5 93 aa16.71■□□□□ 0.27
VPS39-210ENST00000568357 PIN4Q9Y237 131 aaKnown RBP16.71■□□□□ 0.27
VPS39-210ENST00000568357 ATF7P17544 494 aaPredicted RBP16.7■□□□□ 0.26
VPS39-210ENST00000568357 PDCP20941 246 aa16.7■□□□□ 0.26
VPS39-210ENST00000568357 CAPSQ13938 189 aa16.7■□□□□ 0.26
VPS39-210ENST00000568357 BRAPQ7Z569 592 aa16.7■□□□□ 0.26
VPS39-210ENST00000568357 RNF169Q8NCN4 708 aa16.7■□□□□ 0.26
VPS39-210ENST00000568357 SNX29Q8TEQ0 813 aa16.7■□□□□ 0.26
VPS39-210ENST00000568357 CASD1Q96PB1 797 aa16.7■□□□□ 0.26
VPS39-210ENST00000568357 TRAIPQ9BWF2 469 aa16.7■□□□□ 0.26
VPS39-210ENST00000568357 RAB34Q9BZG1 259 aa16.7■□□□□ 0.26
VPS39-210ENST00000568357 POLR3FQ9H1D9 316 aaPredicted RBP16.7■□□□□ 0.26
VPS39-210ENST00000568357 POLD4Q9HCU8 107 aa16.7■□□□□ 0.26
VPS39-210ENST00000568357 DDX19AQ9NUU7 478 aaKnown RBP16.7■□□□□ 0.26
VPS39-210ENST00000568357 TYW1Q9NV66 732 aaKnown RBP16.7■□□□□ 0.26
VPS39-210ENST00000568357 RWDD3Q9Y3V2 267 aa16.7■□□□□ 0.26
VPS39-210ENST00000568357 ARHGEF35A5YM69 484 aa16.69■□□□□ 0.26
VPS39-210ENST00000568357 GRM6O15303 877 aa16.69■□□□□ 0.26
VPS39-210ENST00000568357 EOMESO95936 686 aa16.69■□□□□ 0.26
VPS39-210ENST00000568357 CYP11B2P19099 503 aa16.69■□□□□ 0.26
VPS39-210ENST00000568357 PHKA2P46019 1235 aa16.69■□□□□ 0.26
VPS39-210ENST00000568357 POU5F1BQ06416 359 aa16.69■□□□□ 0.26
VPS39-210ENST00000568357 TFDP1Q14186 410 aa16.69■□□□□ 0.26
VPS39-210ENST00000568357 CLLU1OSQ5K130 101 aa16.69■□□□□ 0.26
VPS39-210ENST00000568357 KRT79Q5XKE5 535 aa16.69■□□□□ 0.26
VPS39-210ENST00000568357 TWF2Q6IBS0 349 aaKnown RBP16.69■□□□□ 0.26
VPS39-210ENST00000568357 LRRC55Q6ZSA7 311 aa16.69■□□□□ 0.26
VPS39-210ENST00000568357 IFNLR1Q8IU57 520 aaPredicted RBP16.69■□□□□ 0.26
VPS39-210ENST00000568357 HLA-CQ95604 372 aa16.69■□□□□ 0.26
VPS39-210ENST00000568357 MRPL38Q96DV4 380 aaKnown RBP16.69■□□□□ 0.26
VPS39-210ENST00000568357 C11orf84Q9BUA3 381 aaPredicted RBP16.69■□□□□ 0.26
VPS39-210ENST00000568357 PLVAPQ9BX97 442 aa16.69■□□□□ 0.26
VPS39-210ENST00000568357 TMEM117Q9H0C3 514 aa16.69■□□□□ 0.26
VPS39-210ENST00000568357 BHMT2Q9H2M3 363 aa16.69■□□□□ 0.26
VPS39-210ENST00000568357 ALG13Q9NP73 1137 aaKnown RBP16.69■□□□□ 0.26
VPS39-210ENST00000568357 AGPAT5Q9NUQ2 364 aa16.69■□□□□ 0.26
VPS39-210ENST00000568357 STK24Q9Y6E0 443 aa16.69■□□□□ 0.26
VPS39-210ENST00000568357 VWA3AA6NCI4 1184 aa16.68■□□□□ 0.26
VPS39-210ENST00000568357 PRR33A8MZF0 331 aa16.68■□□□□ 0.26
VPS39-210ENST00000568357 E9PMD0 336 aa16.68■□□□□ 0.26
VPS39-210ENST00000568357 ZNF623O75123 536 aa16.68■□□□□ 0.26
VPS39-210ENST00000568357 MBTD1Q05BQ5 628 aa16.68■□□□□ 0.26
VPS39-210ENST00000568357 LONRF3Q496Y0 759 aa16.68■□□□□ 0.26
VPS39-210ENST00000568357 ARL6IP4Q66PJ3 421 aaKnown RBP16.68■□□□□ 0.26
VPS39-210ENST00000568357 KLHL23Q8NBE8 558 aa16.68■□□□□ 0.26
VPS39-210ENST00000568357 MCPH1Q8NEM0 835 aa16.68■□□□□ 0.26
VPS39-210ENST00000568357 BSNDQ8WZ55 320 aa16.68■□□□□ 0.26
VPS39-210ENST00000568357 LPPQ93052 612 aa16.68■□□□□ 0.26
VPS39-210ENST00000568357 CWH43Q9H720 699 aa16.68■□□□□ 0.26
VPS39-210ENST00000568357 FAM105AQ9NUU6 356 aa16.68■□□□□ 0.26
VPS39-210ENST00000568357 PLAGL2Q9UPG8 496 aa16.68■□□□□ 0.26
VPS39-210ENST00000568357 MEIS3P2A8K0S8 358 aa16.67■□□□□ 0.26
VPS39-210ENST00000568357 INO80B-WBP1J3KQ70 363 aa16.67■□□□□ 0.26
VPS39-210ENST00000568357 HOXA2O43364 376 aa16.67■□□□□ 0.26
VPS39-210ENST00000568357 TSPAN1O60635 241 aa16.67■□□□□ 0.26
VPS39-210ENST00000568357 ITGB1P05556 798 aa16.67■□□□□ 0.26
VPS39-210ENST00000568357 RESTQ13127 1097 aa16.67■□□□□ 0.26
VPS39-210ENST00000568357 CAMK1Q14012 370 aa16.67■□□□□ 0.26
VPS39-210ENST00000568357 SF3A1Q15459 793 aaKnown RBP16.67■□□□□ 0.26
VPS39-210ENST00000568357 PTPROQ16827 1216 aa16.67■□□□□ 0.26
VPS39-210ENST00000568357 UBXN11Q5T124 520 aa16.67■□□□□ 0.26
VPS39-210ENST00000568357 FAM173BQ6P4H8 233 aa16.67■□□□□ 0.26
VPS39-210ENST00000568357 KCNK18Q7Z418 384 aa16.67■□□□□ 0.26
VPS39-210ENST00000568357 SPPL3Q8TCT6 385 aa16.67■□□□□ 0.26
VPS39-210ENST00000568357 HELQQ8TDG4 1101 aa16.67■□□□□ 0.26
VPS39-210ENST00000568357 P2RX5Q93086 422 aa16.67■□□□□ 0.26
VPS39-210ENST00000568357 PNMA5Q96PV4 448 aa16.67■□□□□ 0.26
VPS39-210ENST00000568357 NFKBIZQ9BYH8 718 aa16.67■□□□□ 0.26
VPS39-210ENST00000568357 DNM3Q9UQ16 869 aa16.67■□□□□ 0.26
VPS39-210ENST00000568357 MTMR6Q9Y217 621 aa16.67■□□□□ 0.26
VPS39-210ENST00000568357 PCDHB2Q9Y5E7 798 aa16.67■□□□□ 0.26
VPS39-210ENST00000568357 EYA4O95677 639 aa16.66■□□□□ 0.26
VPS39-210ENST00000568357 DNAJB1P25685 340 aa16.66■□□□□ 0.26
VPS39-210ENST00000568357 NHLH1Q02575 133 aa16.66■□□□□ 0.26
VPS39-210ENST00000568357 GRIN1Q05586 938 aa16.66■□□□□ 0.26
VPS39-210ENST00000568357 PCBP1Q15365 356 aaKnown RBP eCLIP16.66■□□□□ 0.26
VPS39-210ENST00000568357 ZRSR1Q15695 479 aaKnown RBP16.66■□□□□ 0.26
VPS39-210ENST00000568357 AMHR2Q16671 573 aa16.66■□□□□ 0.26
VPS39-210ENST00000568357 NAALADL2Q58DX5 795 aa16.66■□□□□ 0.26
VPS39-210ENST00000568357 SPOUT1Q5T280 376 aaKnown RBP16.66■□□□□ 0.26
VPS39-210ENST00000568357 ABI1Q8IZP0 508 aa16.66■□□□□ 0.26
VPS39-210ENST00000568357 PLIN2Q99541 437 aa16.66■□□□□ 0.26
VPS39-210ENST00000568357 CLIC4Q9Y696 253 aa16.66■□□□□ 0.26
VPS39-210ENST00000568357 LRRIQ4A6NIV6 560 aa16.65■□□□□ 0.26
VPS39-210ENST00000568357 B4GALT5O43286 388 aa16.65■□□□□ 0.26
VPS39-210ENST00000568357 ERLIN2O94905 339 aa16.65■□□□□ 0.26
VPS39-210ENST00000568357 SKIP12755 728 aa16.65■□□□□ 0.26
VPS39-210ENST00000568357 RAB27AP51159 221 aa16.65■□□□□ 0.26
VPS39-210ENST00000568357 HYIQ5T013 277 aa16.65■□□□□ 0.26
VPS39-210ENST00000568357 MRPL10Q7Z7H8 261 aaKnown RBP16.65■□□□□ 0.26
VPS39-210ENST00000568357 CPB2Q96IY4 423 aa16.65■□□□□ 0.26
VPS39-210ENST00000568357 LMAN2LQ9H0V9 348 aa16.65■□□□□ 0.26
VPS39-210ENST00000568357 PCDHB12Q9Y5F1 795 aa16.65■□□□□ 0.26
VPS39-210ENST00000568357 BRWD1Q9NSI6 2320 aa16.64■□□□□ 0.25
VPS39-210ENST00000568357 ARID2Q68CP9 1835 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms