RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 MRPL10Q7Z7H8 261 aaKnown RBP16.59■□□□□ 0.25
CLN3-213ENST00000565047 NOSTRINQ8IVI9 506 aa16.59■□□□□ 0.25
CLN3-213ENST00000565047 LRRC43Q8N309 656 aa16.59■□□□□ 0.25
CLN3-213ENST00000565047 EFHBQ8N7U6 833 aa16.59■□□□□ 0.25
CLN3-213ENST00000565047 HELQQ8TDG4 1101 aa16.59■□□□□ 0.25
CLN3-213ENST00000565047 MTRQ99707 1265 aa16.59■□□□□ 0.25
CLN3-213ENST00000565047 FAM105AQ9NUU6 356 aa16.59■□□□□ 0.25
CLN3-213ENST00000565047 CLEC1BQ9P126 229 aa16.59■□□□□ 0.25
CLN3-213ENST00000565047 PIN4Q9Y237 131 aaKnown RBP16.59■□□□□ 0.25
CLN3-213ENST00000565047 MED24O75448 989 aa16.58■□□□□ 0.24
CLN3-213ENST00000565047 OFD1O75665 1012 aa16.58■□□□□ 0.24
CLN3-213ENST00000565047 DGAT1O75907 488 aa16.58■□□□□ 0.24
CLN3-213ENST00000565047 CSPG5O95196 566 aa16.58■□□□□ 0.24
CLN3-213ENST00000565047 ATP2B1P20020 1258 aa16.58■□□□□ 0.24
CLN3-213ENST00000565047 PBX3P40426 434 aa16.58■□□□□ 0.24
CLN3-213ENST00000565047 PTENP60484 403 aa16.58■□□□□ 0.24
CLN3-213ENST00000565047 AMHR2Q16671 573 aa16.58■□□□□ 0.24
CLN3-213ENST00000565047 CATSPER4Q7RTX7 472 aa16.58■□□□□ 0.24
CLN3-213ENST00000565047 RNF149Q8NC42 400 aa16.58■□□□□ 0.24
CLN3-213ENST00000565047 ASAP3Q8TDY4 903 aa16.58■□□□□ 0.24
CLN3-213ENST00000565047 PIGOQ8TEQ8 1089 aa16.58■□□□□ 0.24
CLN3-213ENST00000565047 TCP11Q8WWU5 503 aa16.58■□□□□ 0.24
CLN3-213ENST00000565047 MRPS27Q92552 414 aaKnown RBP16.58■□□□□ 0.24
CLN3-213ENST00000565047 LPPQ93052 612 aa16.58■□□□□ 0.24
CLN3-213ENST00000565047 POLR3CQ9BUI4 534 aaPredicted RBP16.58■□□□□ 0.24
CLN3-213ENST00000565047 TUFT1Q9NNX1 390 aa16.58■□□□□ 0.24
CLN3-213ENST00000565047 TLR9Q9NR96 1032 aa16.58■□□□□ 0.24
CLN3-213ENST00000565047 GLRA2P23416 452 aa16.57■□□□□ 0.24
CLN3-213ENST00000565047 TECP42680 631 aa16.57■□□□□ 0.24
CLN3-213ENST00000565047 TRAPPC10P48553 1259 aa16.57■□□□□ 0.24
CLN3-213ENST00000565047 AFF1P51825 1210 aaKnown RBP16.57■□□□□ 0.24
CLN3-213ENST00000565047 CAPSQ13938 189 aa16.57■□□□□ 0.24
CLN3-213ENST00000565047 MXD4Q14582 209 aaPredicted RBP16.57■□□□□ 0.24
CLN3-213ENST00000565047 NBR1Q14596 966 aa16.57■□□□□ 0.24
CLN3-213ENST00000565047 ECM1Q16610 540 aa16.57■□□□□ 0.24
CLN3-213ENST00000565047 SPOUT1Q5T280 376 aaKnown RBP16.57■□□□□ 0.24
CLN3-213ENST00000565047 TWF2Q6IBS0 349 aaKnown RBP16.57■□□□□ 0.24
CLN3-213ENST00000565047 AGMOQ6ZNB7 445 aa16.57■□□□□ 0.24
CLN3-213ENST00000565047 THNSL1Q8IYQ7 743 aa16.57■□□□□ 0.24
CLN3-213ENST00000565047 SLC39A11Q8N1S5 342 aa16.57■□□□□ 0.24
CLN3-213ENST00000565047 RNF169Q8NCN4 708 aa16.57■□□□□ 0.24
CLN3-213ENST00000565047 VN1R2Q8NFZ6 395 aa16.57■□□□□ 0.24
CLN3-213ENST00000565047 RSPH1Q8WYR4 309 aa16.57■□□□□ 0.24
CLN3-213ENST00000565047 NFKBIZQ9BYH8 718 aa16.57■□□□□ 0.24
CLN3-213ENST00000565047 IGFLR1Q9H665 355 aa16.57■□□□□ 0.24
CLN3-213ENST00000565047 C19orf67A6NJJ6 358 aa16.56■□□□□ 0.24
CLN3-213ENST00000565047 MBTPS2O43462 519 aa16.56■□□□□ 0.24
CLN3-213ENST00000565047 B4GALT3O60512 393 aa16.56■□□□□ 0.24
CLN3-213ENST00000565047 EYA4O95677 639 aa16.56■□□□□ 0.24
CLN3-213ENST00000565047 OR52Z1P0C646 297 aa16.56■□□□□ 0.24
CLN3-213ENST00000565047 SKIP12755 728 aa16.56■□□□□ 0.24
CLN3-213ENST00000565047 RPA1P27694 616 aa16.56■□□□□ 0.24
CLN3-213ENST00000565047 NRIP1P48552 1158 aa16.56■□□□□ 0.24
CLN3-213ENST00000565047 SMAD2Q15796 467 aaKnown RBP16.56■□□□□ 0.24
CLN3-213ENST00000565047 DUSP6Q16828 381 aa16.56■□□□□ 0.24
CLN3-213ENST00000565047 TTC38Q5R3I4 469 aa16.56■□□□□ 0.24
CLN3-213ENST00000565047 PDE12Q6L8Q7 609 aaKnown RBP16.56■□□□□ 0.24
CLN3-213ENST00000565047 ABI1Q8IZP0 508 aa16.56■□□□□ 0.24
CLN3-213ENST00000565047 SMG8Q8ND04 991 aaKnown RBP16.56■□□□□ 0.24
CLN3-213ENST00000565047 TMX3Q96JJ7 454 aa16.56■□□□□ 0.24
CLN3-213ENST00000565047 ZNF558Q96NG5 402 aa16.56■□□□□ 0.24
CLN3-213ENST00000565047 DBR1Q9UK59 544 aaKnown RBP16.56■□□□□ 0.24
CLN3-213ENST00000565047 PCDHB2Q9Y5E7 798 aa16.56■□□□□ 0.24
CLN3-213ENST00000565047 TSPAN1O60635 241 aa16.55■□□□□ 0.24
CLN3-213ENST00000565047 FXR2P51116 673 aaKnown RBP eCLIP16.55■□□□□ 0.24
CLN3-213ENST00000565047 RAB27AP51159 221 aa16.55■□□□□ 0.24
CLN3-213ENST00000565047 BCAR1P56945 870 aa16.55■□□□□ 0.24
CLN3-213ENST00000565047 RBM10P98175 930 aaKnown RBP16.55■□□□□ 0.24
CLN3-213ENST00000565047 ZP2Q05996 745 aa16.55■□□□□ 0.24
CLN3-213ENST00000565047 MBTD1Q05BQ5 628 aa16.55■□□□□ 0.24
CLN3-213ENST00000565047 COASYQ13057 564 aa16.55■□□□□ 0.24
CLN3-213ENST00000565047 PCBP1Q15365 356 aaKnown RBP eCLIP16.55■□□□□ 0.24
CLN3-213ENST00000565047 LONRF3Q496Y0 759 aa16.55■□□□□ 0.24
CLN3-213ENST00000565047 TMEM184AQ6ZMB5 413 aa16.55■□□□□ 0.24
CLN3-213ENST00000565047 RBM23Q86U06 439 aaKnown RBP16.55■□□□□ 0.24
CLN3-213ENST00000565047 TMEM173Q86WV6 379 aaPredicted RBP16.55■□□□□ 0.24
CLN3-213ENST00000565047 GJD3Q8N144 294 aa16.55■□□□□ 0.24
CLN3-213ENST00000565047 FAM184AQ8NB25 1140 aa16.55■□□□□ 0.24
CLN3-213ENST00000565047 MRPL9Q9BYD2 267 aaKnown RBP16.55■□□□□ 0.24
CLN3-213ENST00000565047 EPHX3Q9H6B9 360 aa16.55■□□□□ 0.24
CLN3-213ENST00000565047 NRDE2Q9H7Z3 1164 aa16.55■□□□□ 0.24
CLN3-213ENST00000565047 TBC1D13Q9NVG8 400 aa16.55■□□□□ 0.24
CLN3-213ENST00000565047 SPG21Q9NZD8 308 aa16.55■□□□□ 0.24
CLN3-213ENST00000565047 HIDE1A8MVS5 230 aa16.54■□□□□ 0.24
CLN3-213ENST00000565047 PI4K2BG5E9Z4 385 aa16.54■□□□□ 0.24
CLN3-213ENST00000565047 PER2O15055 1255 aa16.54■□□□□ 0.24
CLN3-213ENST00000565047 INPPL1O15357 1258 aa16.54■□□□□ 0.24
CLN3-213ENST00000565047 NCLP19338 710 aaKnown RBP16.54■□□□□ 0.24
CLN3-213ENST00000565047 PPM1AP35813 382 aa16.54■□□□□ 0.24
CLN3-213ENST00000565047 IL17AQ16552 155 aa16.54■□□□□ 0.24
CLN3-213ENST00000565047 NOMO2Q5JPE7 1267 aa16.54■□□□□ 0.24
CLN3-213ENST00000565047 POTEGQ6S5H5 508 aa16.54■□□□□ 0.24
CLN3-213ENST00000565047 ZNF280BQ86YH2 543 aa16.54■□□□□ 0.24
CLN3-213ENST00000565047 IGSF22Q8N9C0 903 aa16.54■□□□□ 0.24
CLN3-213ENST00000565047 SMRP1Q8NCR6 262 aa16.54■□□□□ 0.24
CLN3-213ENST00000565047 BCL7CQ8WUZ0 217 aaPredicted RBP16.54■□□□□ 0.24
CLN3-213ENST00000565047 TBC1D32Q96NH3 1257 aa16.54■□□□□ 0.24
CLN3-213ENST00000565047 NACC1Q96RE7 527 aa16.54■□□□□ 0.24
CLN3-213ENST00000565047 CDCA3Q99618 268 aaPredicted RBP16.54■□□□□ 0.24
CLN3-213ENST00000565047 C11orf16Q9NQ32 467 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms