RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 CSPP1Q1MSJ5 1256 aa14.85□□□□□ -0.03
CLK3-213ENST00000563842 PAN2Q504Q3 1202 aaKnown RBP14.85□□□□□ -0.03
CLK3-213ENST00000563842 SPOUT1Q5T280 376 aaKnown RBP14.85□□□□□ -0.03
CLK3-213ENST00000563842 FAM102BQ5T8I3 360 aa14.85□□□□□ -0.03
CLK3-213ENST00000563842 ZBTB8OSQ8IWT0 167 aa14.85□□□□□ -0.03
CLK3-213ENST00000563842 MICALL1Q8N3F8 863 aa14.85□□□□□ -0.03
CLK3-213ENST00000563842 P2RX5Q93086 422 aa14.85□□□□□ -0.03
CLK3-213ENST00000563842 PGBD4Q96DM1 585 aa14.85□□□□□ -0.03
CLK3-213ENST00000563842 CDK5RAP3Q96JB5 506 aa14.85□□□□□ -0.03
CLK3-213ENST00000563842 LMAN2LQ9H0V9 348 aa14.85□□□□□ -0.03
CLK3-213ENST00000563842 BHMT2Q9H2M3 363 aa14.85□□□□□ -0.03
CLK3-213ENST00000563842 DAXXQ9UER7 740 aaPredicted RBP14.85□□□□□ -0.03
CLK3-213ENST00000563842 CARNS1A5YM72 827 aa14.84□□□□□ -0.03
CLK3-213ENST00000563842 INO80B-WBP1J3KQ70 363 aa14.84□□□□□ -0.03
CLK3-213ENST00000563842 ZNF623O75123 536 aa14.84□□□□□ -0.03
CLK3-213ENST00000563842 GLRA2P23416 452 aa14.84□□□□□ -0.03
CLK3-213ENST00000563842 SF3A1Q15459 793 aaKnown RBP14.84□□□□□ -0.03
CLK3-213ENST00000563842 ECM1Q16610 540 aa14.84□□□□□ -0.03
CLK3-213ENST00000563842 HYIQ5T013 277 aa14.84□□□□□ -0.03
CLK3-213ENST00000563842 MAEAQ7L5Y9 396 aa14.84□□□□□ -0.03
CLK3-213ENST00000563842 RNF169Q8NCN4 708 aa14.84□□□□□ -0.03
CLK3-213ENST00000563842 CNNM3Q8NE01 707 aa14.84□□□□□ -0.03
CLK3-213ENST00000563842 ASAP3Q8TDY4 903 aa14.84□□□□□ -0.03
CLK3-213ENST00000563842 KIFAP3Q92845 792 aa14.84□□□□□ -0.03
CLK3-213ENST00000563842 MRPL38Q96DV4 380 aaKnown RBP14.84□□□□□ -0.03
CLK3-213ENST00000563842 CCDC51Q96ER9 411 aa14.84□□□□□ -0.03
CLK3-213ENST00000563842 IFT74Q96LB3 600 aa14.84□□□□□ -0.03
CLK3-213ENST00000563842 C2orf40Q9H1Z8 148 aa14.84□□□□□ -0.03
CLK3-213ENST00000563842 FAM105AQ9NUU6 356 aa14.84□□□□□ -0.03
CLK3-213ENST00000563842 PCDHB12Q9Y5F1 795 aa14.84□□□□□ -0.03
CLK3-213ENST00000563842 MRPL42Q9Y6G3 142 aaKnown RBP14.84□□□□□ -0.03
CLK3-213ENST00000563842 LRRIQ4A6NIV6 560 aa14.83□□□□□ -0.04
CLK3-213ENST00000563842 PP2D1A8MPX8 630 aa14.83□□□□□ -0.04
CLK3-213ENST00000563842 FGFR1P11362 822 aa14.83□□□□□ -0.04
CLK3-213ENST00000563842 CDC25AP30304 524 aa14.83□□□□□ -0.04
CLK3-213ENST00000563842 LONP1P36776 959 aaKnown RBP14.83□□□□□ -0.04
CLK3-213ENST00000563842 UBA7P41226 1012 aa14.83□□□□□ -0.04
CLK3-213ENST00000563842 NAMPTP43490 491 aa14.83□□□□□ -0.04
CLK3-213ENST00000563842 RESTQ13127 1097 aa14.83□□□□□ -0.04
CLK3-213ENST00000563842 ZRSR1Q15695 479 aaKnown RBP14.83□□□□□ -0.04
CLK3-213ENST00000563842 NOTUMQ6P988 496 aa14.83□□□□□ -0.04
CLK3-213ENST00000563842 ZNF598Q86UK7 904 aaKnown RBP14.83□□□□□ -0.04
CLK3-213ENST00000563842 CALML4Q96GE6 196 aa14.83□□□□□ -0.04
CLK3-213ENST00000563842 MMTAG2Q9BU76 263 aaKnown RBP14.83□□□□□ -0.04
CLK3-213ENST00000563842 TIPINQ9BVW5 301 aa14.83□□□□□ -0.04
CLK3-213ENST00000563842 MRPL9Q9BYD2 267 aaKnown RBP14.83□□□□□ -0.04
CLK3-213ENST00000563842 MINDY3Q9H8M7 445 aa14.83□□□□□ -0.04
CLK3-213ENST00000563842 PRMT7Q9NVM4 692 aaPredicted RBP14.83□□□□□ -0.04
CLK3-213ENST00000563842 KCNG1Q9UIX4 513 aa14.83□□□□□ -0.04
CLK3-213ENST00000563842 MTMR6Q9Y217 621 aa14.83□□□□□ -0.04
CLK3-213ENST00000563842 TDRD15B5MCY1 1934 aaKnown RBP14.83□□□□□ -0.04
CLK3-213ENST00000563842 PLXNA4Q9HCM2 1894 aa14.82□□□□□ -0.04
CLK3-213ENST00000563842 BRWD1Q9NSI6 2320 aa14.82□□□□□ -0.04
CLK3-213ENST00000563842 E9PMD0 336 aa14.82□□□□□ -0.04
CLK3-213ENST00000563842 LINC00271P0C7V0 271 aa14.82□□□□□ -0.04
CLK3-213ENST00000563842 LAG3P18627 525 aa14.82□□□□□ -0.04
CLK3-213ENST00000563842 PLA2G5P39877 138 aa14.82□□□□□ -0.04
CLK3-213ENST00000563842 GATMP50440 423 aa14.82□□□□□ -0.04
CLK3-213ENST00000563842 MBTD1Q05BQ5 628 aa14.82□□□□□ -0.04
CLK3-213ENST00000563842 SKIV2LQ15477 1246 aaKnown RBP14.82□□□□□ -0.04
CLK3-213ENST00000563842 TIGD5Q53EQ6 642 aa14.82□□□□□ -0.04
CLK3-213ENST00000563842 CABP7Q86V35 215 aa14.82□□□□□ -0.04
CLK3-213ENST00000563842 LRRC43Q8N309 656 aa14.82□□□□□ -0.04
CLK3-213ENST00000563842 DEPTORQ8TB45 409 aa14.82□□□□□ -0.04
CLK3-213ENST00000563842 PRIMPOLQ96LW4 560 aa14.82□□□□□ -0.04
CLK3-213ENST00000563842 CASD1Q96PB1 797 aa14.82□□□□□ -0.04
CLK3-213ENST00000563842 UBN1Q9NPG3 1134 aa14.82□□□□□ -0.04
CLK3-213ENST00000563842 GPRC5CQ9NQ84 441 aa14.82□□□□□ -0.04
CLK3-213ENST00000563842 ATG2AQ2TAZ0 1938 aa14.82□□□□□ -0.04
CLK3-213ENST00000563842 HOXA11P31270 313 aaPredicted RBP14.81□□□□□ -0.04
CLK3-213ENST00000563842 EFNA5P52803 228 aa14.81□□□□□ -0.04
CLK3-213ENST00000563842 UBE3AQ05086 875 aa14.81□□□□□ -0.04
CLK3-213ENST00000563842 CDCA2Q69YH5 1023 aaPredicted RBP14.81□□□□□ -0.04
CLK3-213ENST00000563842 GLB1LQ6UWU2 654 aa14.81□□□□□ -0.04
CLK3-213ENST00000563842 MRPL10Q7Z7H8 261 aaKnown RBP14.81□□□□□ -0.04
CLK3-213ENST00000563842 HACE1Q8IYU2 909 aa14.81□□□□□ -0.04
CLK3-213ENST00000563842 HELQQ8TDG4 1101 aa14.81□□□□□ -0.04
CLK3-213ENST00000563842 DRC1Q96MC2 740 aa14.81□□□□□ -0.04
CLK3-213ENST00000563842 TRIM6Q9C030 488 aaPredicted RBP14.81□□□□□ -0.04
CLK3-213ENST00000563842 C17orf75Q9HAS0 396 aa14.81□□□□□ -0.04
CLK3-213ENST00000563842 TYW1Q9NV66 732 aaKnown RBP14.81□□□□□ -0.04
CLK3-213ENST00000563842 KCND2Q9NZV8 630 aa14.81□□□□□ -0.04
CLK3-213ENST00000563842 THEGQ9P2T0 379 aa14.81□□□□□ -0.04
CLK3-213ENST00000563842 COG5Q9UP83 839 aa14.81□□□□□ -0.04
CLK3-213ENST00000563842 PLAGL2Q9UPG8 496 aa14.81□□□□□ -0.04
CLK3-213ENST00000563842 PCDHB2Q9Y5E7 798 aa14.81□□□□□ -0.04
CLK3-213ENST00000563842 PHLPP2Q6ZVD8 1323 aa14.81□□□□□ -0.04
CLK3-213ENST00000563842 CNTNAP2Q9UHC6 1331 aa14.81□□□□□ -0.04
CLK3-213ENST00000563842 TSPAN1O60635 241 aa14.8□□□□□ -0.04
CLK3-213ENST00000563842 ATF7P17544 494 aaPredicted RBP14.8□□□□□ -0.04
CLK3-213ENST00000563842 PPM1AP35813 382 aa14.8□□□□□ -0.04
CLK3-213ENST00000563842 MAPK6Q16659 721 aa14.8□□□□□ -0.04
CLK3-213ENST00000563842 FAM187BQ17R55 369 aa14.8□□□□□ -0.04
CLK3-213ENST00000563842 AAK1Q2M2I8 961 aa14.8□□□□□ -0.04
CLK3-213ENST00000563842 CLLU1OSQ5K130 101 aa14.8□□□□□ -0.04
CLK3-213ENST00000563842 RINT1Q6NUQ1 792 aa14.8□□□□□ -0.04
CLK3-213ENST00000563842 PPP4R3CPQ6ZMV5 832 aa14.8□□□□□ -0.04
CLK3-213ENST00000563842 SYT2Q8N9I0 419 aaPredicted RBP14.8□□□□□ -0.04
CLK3-213ENST00000563842 KLHL23Q8NBE8 558 aa14.8□□□□□ -0.04
CLK3-213ENST00000563842 COLGALT1Q8NBJ5 622 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms