RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 ZMYM2Q9UBW7 1377 aa8.19□□□□□ -1.1
VPS39-204ENST00000561818 A0A0A6YYK5 440 aaPredicted RBP8.18□□□□□ -1.1
VPS39-204ENST00000561818 NPHP3-ACAD11A0A0J9YXS1 232 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 DENND3A2RUS2 1198 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 ZNF233A6NK53 670 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 LRRC53A6NM62 1247 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 CCDC169A6NNP5 214 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 RSPH10B2B2RC85 870 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 CES2O00748 559 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 RIOK3O14730 519 aaKnown RBP8.18□□□□□ -1.1
VPS39-204ENST00000561818 HNRNPDLO14979 420 aaKnown RBP8.18□□□□□ -1.1
VPS39-204ENST00000561818 PJA2O43164 708 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 URI1O94763 535 aaPredicted RBP8.18□□□□□ -1.1
VPS39-204ENST00000561818 GH1P01241 217 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 RSPH10BP0C881 870 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 NMT1P30419 496 aaKnown RBP8.18□□□□□ -1.1
VPS39-204ENST00000561818 NPTX2P47972 431 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 LIG4P49917 911 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 MXI1P50539 228 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 CASP5P51878 434 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 MFAP3P55082 362 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 BPIFB4P59827 614 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 ITIH3Q06033 890 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 SREBF2Q12772 1141 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 PRKG1Q13976 671 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 ZNF484Q5JVG2 852 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 CELF3Q5SZQ8 465 aaKnown RBP8.18□□□□□ -1.1
VPS39-204ENST00000561818 KLHDC7AQ5VTJ3 777 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 KRT39Q6A163 491 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 MAMDC4Q6UXC1 1216 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 RAD9BQ6WBX8 426 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 FAM43BQ6ZT52 329 aaPredicted RBP8.18□□□□□ -1.1
VPS39-204ENST00000561818 TOGARAM2Q6ZUX3 1019 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 ANO5Q75V66 913 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 DAW1Q8N136 415 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 ATP8B4Q8TF62 1192 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 SOCS4Q8WXH5 440 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 BAP1Q92560 729 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 GOLGA1Q92805 767 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 BICD1Q96G01 975 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 BORCS6Q96GS4 357 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 WNK4Q96J92 1243 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 FBXL18Q96ME1 805 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 IMPG2Q9BZV3 1241 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 DNAI2Q9GZS0 605 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 TMEM8AQ9HCN3 771 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 PDLIM7Q9NR12 457 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 HSPBP1Q9NZL4 362 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 CDC23Q9UJX2 597 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 STYXL1Q9Y6J8 313 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 MYH11P35749 1972 aa8.18□□□□□ -1.1
VPS39-204ENST00000561818 CCL15-CCL14A0A0B4J2E2 113 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 RBM47A0AV96 593 aaKnown RBP8.17□□□□□ -1.1
VPS39-204ENST00000561818 SLC15A5A6NIM6 579 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 K7ERI5 159 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 PDHXO00330 501 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 EXTL3O43909 919 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 ATP9AO75110 1047 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 RGS20O76081 388 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 GGPS1O95749 300 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 POTEJP0CG39 1038 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 TBXAS1P24557 533 aaPredicted RBP8.17□□□□□ -1.1
VPS39-204ENST00000561818 PON1P27169 355 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 CNGA1P29973 690 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 POLR2FP61218 127 aaKnown RBP8.17□□□□□ -1.1
VPS39-204ENST00000561818 RAPGEF1Q13905 1077 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 PPP2R5EQ16537 467 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 SNRNP35Q16560 246 aaKnown RBP8.17□□□□□ -1.1
VPS39-204ENST00000561818 CCL15Q16663 113 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 TRIM65Q6PJ69 517 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 WDR59Q6PJI9 974 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 SEPT14Q6ZU15 432 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 CYFIP1Q7L576 1253 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 ZNF677Q86XU0 584 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 CCDC60Q8IWA6 550 aaPredicted RBP8.17□□□□□ -1.1
VPS39-204ENST00000561818 GPD1LQ8N335 351 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 TTC39CQ8N584 583 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 GPR161Q8N6U8 529 aaKnown RBP8.17□□□□□ -1.1
VPS39-204ENST00000561818 PPTC7Q8NI37 304 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 POMGNT1Q8WZA1 660 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 GLG1Q92896 1179 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 TRIM11Q96F44 468 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 PURBQ96QR8 312 aaKnown RBP8.17□□□□□ -1.1
VPS39-204ENST00000561818 FNBP1Q96RU3 617 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 TSPAN18Q96SJ8 248 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 MRPL4Q9BYD3 311 aaKnown RBP8.17□□□□□ -1.1
VPS39-204ENST00000561818 POLR3FQ9H1D9 316 aaPredicted RBP8.17□□□□□ -1.1
VPS39-204ENST00000561818 GANQ9H2C0 597 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 ABHD16BQ9H3Z7 469 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 LZTFL1Q9NQ48 299 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 AGPAT5Q9NUQ2 364 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 PKD2L1Q9P0L9 805 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 WRAP73Q9P2S5 460 aaPredicted RBP8.17□□□□□ -1.1
VPS39-204ENST00000561818 RBPJLQ9UBG7 517 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 DDX41Q9UJV9 622 aaKnown RBP8.17□□□□□ -1.1
VPS39-204ENST00000561818 SCAF8Q9UPN6 1271 aaKnown RBP8.17□□□□□ -1.1
VPS39-204ENST00000561818 MRFAP1Q9Y605 127 aa8.17□□□□□ -1.1
VPS39-204ENST00000561818 CTAGE15A4D2H0 777 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 RRN3P2A6NIE6 340 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 USP27XA6NNY8 438 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 92.6 ms