RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 CCNT1O60563 726 aaKnown RBP21.3■■□□□ 1
VPS35-202ENST00000561713 NR5A1Q13285 461 aa21.3■■□□□ 1
VPS35-202ENST00000561713 SMC1AQ14683 1233 aaKnown RBP21.3■■□□□ 1
VPS35-202ENST00000561713 TPRNQ4KMQ1 711 aa21.3■■□□□ 1
VPS35-202ENST00000561713 ANO5Q75V66 913 aa21.3■■□□□ 1
VPS35-202ENST00000561713 KSR1Q8IVT5 923 aa21.3■■□□□ 1
VPS35-202ENST00000561713 SLC39A11Q8N1S5 342 aa21.3■■□□□ 1
VPS35-202ENST00000561713 HELQQ8TDG4 1101 aa21.3■■□□□ 1
VPS35-202ENST00000561713 ADAM7Q9H2U9 754 aa21.3■■□□□ 1
VPS35-202ENST00000561713 KCNMB3Q9NPA1 279 aa21.3■■□□□ 1
VPS35-202ENST00000561713 A0A087WZ62 844 aa21.29■■□□□ 1
VPS35-202ENST00000561713 CLASP2O75122 1294 aaKnown RBP21.29■■□□□ 1
VPS35-202ENST00000561713 BRD1O95696 1058 aa21.29■■□□□ 1
VPS35-202ENST00000561713 WEE2P0C1S8 567 aa21.29■■□□□ 1
VPS35-202ENST00000561713 NPEPPSP55786 919 aa21.29■■□□□ 1
VPS35-202ENST00000561713 LONRF3Q496Y0 759 aa21.29■■□□□ 1
VPS35-202ENST00000561713 RHPN2Q8IUC4 686 aa21.29■■□□□ 1
VPS35-202ENST00000561713 NLRP4Q96MN2 994 aa21.29■■□□□ 1
VPS35-202ENST00000561713 FDXACB1Q9BRP7 624 aaPredicted RBP21.29■■□□□ 1
VPS35-202ENST00000561713 NIFKQ9BYG3 293 aaKnown RBP21.29■■□□□ 1
VPS35-202ENST00000561713 SMOC2Q9H3U7 446 aa21.29■■□□□ 1
VPS35-202ENST00000561713 A0A0U1RQF3 1178 aa21.28■■□□□ 1
VPS35-202ENST00000561713 NT5C1B-RDH14C9J2C7 533 aa21.28■■□□□ 1
VPS35-202ENST00000561713 JAK2O60674 1132 aa21.28■■□□□ 1
VPS35-202ENST00000561713 CA8P35219 290 aa21.28■■□□□ 1
VPS35-202ENST00000561713 PSMC5P62195 406 aa21.28■■□□□ 1
VPS35-202ENST00000561713 ITIH3Q06033 890 aa21.28■■□□□ 1
VPS35-202ENST00000561713 PPP2R5CQ13362 524 aa21.28■■□□□ 1
VPS35-202ENST00000561713 MTMR3Q13615 1198 aa21.28■■□□□ 1
VPS35-202ENST00000561713 ME3Q16798 604 aa21.28■■□□□ 1
VPS35-202ENST00000561713 CES5AQ6NT32 575 aa21.28■■□□□ 1
VPS35-202ENST00000561713 ZNF598Q86UK7 904 aaKnown RBP21.28■■□□□ 1
VPS35-202ENST00000561713 FAM177A1Q8N128 213 aaPredicted RBP21.28■■□□□ 1
VPS35-202ENST00000561713 ZNF579Q8NAF0 562 aaKnown RBP21.28■■□□□ 1
VPS35-202ENST00000561713 HAS1Q92839 578 aa21.28■■□□□ 1
VPS35-202ENST00000561713 IRF2BPLQ9H1B7 796 aa21.28■■□□□ 1
VPS35-202ENST00000561713 SUCLA2Q9P2R7 463 aaPredicted RBP21.28■■□□□ 1
VPS35-202ENST00000561713 SORCS3Q9UPU3 1222 aa21.28■■□□□ 1
VPS35-202ENST00000561713 IGKV6-21A0A0C4DH24 114 aa21.27■■□□□ 1
VPS35-202ENST00000561713 FDPSP14324 419 aaKnown RBP21.27■■□□□ 1
VPS35-202ENST00000561713 XBP1P17861 261 aa21.27■■□□□ 1
VPS35-202ENST00000561713 BCAR1P56945 870 aa21.27■■□□□ 1
VPS35-202ENST00000561713 ANAPC15P60006 121 aa21.27■■□□□ 1
VPS35-202ENST00000561713 NCAPH2Q6IBW4 605 aa21.27■■□□□ 1
VPS35-202ENST00000561713 KANK3Q6NY19 840 aa21.27■■□□□ 1
VPS35-202ENST00000561713 UBALD2Q8IYN6 164 aa21.27■■□□□ 1
VPS35-202ENST00000561713 C12orf76Q8N812 135 aaPredicted RBP21.27■■□□□ 1
VPS35-202ENST00000561713 LPPQ93052 612 aa21.27■■□□□ 1
VPS35-202ENST00000561713 GTF3C6Q969F1 213 aa21.27■■□□□ 1
VPS35-202ENST00000561713 NECTIN4Q96NY8 510 aa21.27■■□□□ 1
VPS35-202ENST00000561713 LXNQ9BS40 222 aa21.27■■□□□ 1
VPS35-202ENST00000561713 GCOM2Q9BZD3 368 aaPredicted RBP21.27■■□□□ 1
VPS35-202ENST00000561713 WNT7AO00755 349 aa21.26■□□□□ 0.99
VPS35-202ENST00000561713 GALR2O43603 387 aaPredicted RBP21.26■□□□□ 0.99
VPS35-202ENST00000561713 CXCL14O95715 111 aa21.26■□□□□ 0.99
VPS35-202ENST00000561713 EOMESO95936 686 aa21.26■□□□□ 0.99
VPS35-202ENST00000561713 GCFC2P16383 781 aaKnown RBP21.26■□□□□ 0.99
VPS35-202ENST00000561713 KRT2P35908 639 aa21.26■□□□□ 0.99
VPS35-202ENST00000561713 ALDH7A1P49419 539 aaKnown RBP21.26■□□□□ 0.99
VPS35-202ENST00000561713 CYP4A11Q02928 519 aa21.26■□□□□ 0.99
VPS35-202ENST00000561713 ST3GAL1Q11201 340 aa21.26■□□□□ 0.99
VPS35-202ENST00000561713 RARS2Q5T160 578 aaKnown RBP21.26■□□□□ 0.99
VPS35-202ENST00000561713 AUTS2Q8WXX7 1259 aa21.26■□□□□ 0.99
VPS35-202ENST00000561713 CYP26B1Q9NR63 512 aa21.26■□□□□ 0.99
VPS35-202ENST00000561713 RGL1Q9NZL6 768 aa21.26■□□□□ 0.99
VPS35-202ENST00000561713 PIN4Q9Y237 131 aaKnown RBP21.26■□□□□ 0.99
VPS35-202ENST00000561713 MYO10Q9HD67 2058 aa21.25■□□□□ 0.99
VPS35-202ENST00000561713 MEIS3P2A8K0S8 358 aa21.25■□□□□ 0.99
VPS35-202ENST00000561713 MAFO75444 373 aaPredicted RBP21.25■□□□□ 0.99
VPS35-202ENST00000561713 ASGR2P07307 311 aa21.25■□□□□ 0.99
VPS35-202ENST00000561713 QARSP47897 775 aaKnown RBP21.25■□□□□ 0.99
VPS35-202ENST00000561713 NUBP1P53384 320 aa21.25■□□□□ 0.99
VPS35-202ENST00000561713 ANKRD1Q15327 319 aa21.25■□□□□ 0.99
VPS35-202ENST00000561713 TWF2Q6IBS0 349 aaKnown RBP21.25■□□□□ 0.99
VPS35-202ENST00000561713 PPP4R3AQ6IN85 833 aa21.25■□□□□ 0.99
VPS35-202ENST00000561713 TMEM173Q86WV6 379 aaPredicted RBP21.25■□□□□ 0.99
VPS35-202ENST00000561713 VPS52Q8N1B4 723 aa21.25■□□□□ 0.99
VPS35-202ENST00000561713 ZNF710Q8N1W2 664 aa21.25■□□□□ 0.99
VPS35-202ENST00000561713 TMEM105Q8N8V8 129 aa21.25■□□□□ 0.99
VPS35-202ENST00000561713 NSUN7Q8NE18 718 aaKnown RBP21.25■□□□□ 0.99
VPS35-202ENST00000561713 TNFRSF25Q93038 417 aa21.25■□□□□ 0.99
VPS35-202ENST00000561713 PLXNA3P51805 1871 aa21.24■□□□□ 0.99
VPS35-202ENST00000561713 WDR87Q6ZQQ6 2873 aa21.24■□□□□ 0.99
VPS35-202ENST00000561713 MARCH6O60337 910 aa21.24■□□□□ 0.99
VPS35-202ENST00000561713 SEC24BO95487 1268 aa21.24■□□□□ 0.99
VPS35-202ENST00000561713 SFPQP23246 707 aaKnown RBP eCLIP21.24■□□□□ 0.99
VPS35-202ENST00000561713 MTHFRP42898 656 aa21.24■□□□□ 0.99
VPS35-202ENST00000561713 DNM2P50570 870 aa21.24■□□□□ 0.99
VPS35-202ENST00000561713 CTTNQ14247 550 aaKnown RBP21.24■□□□□ 0.99
VPS35-202ENST00000561713 FEZF2Q8TBJ5 459 aa21.24■□□□□ 0.99
VPS35-202ENST00000561713 TMEM143Q96AN5 459 aa21.24■□□□□ 0.99
VPS35-202ENST00000561713 TMEM169Q96HH4 297 aa21.24■□□□□ 0.99
VPS35-202ENST00000561713 DYDC2Q96IM9 177 aa21.24■□□□□ 0.99
VPS35-202ENST00000561713 CEP170P1Q96L14 293 aa21.24■□□□□ 0.99
VPS35-202ENST00000561713 FAM20AQ96MK3 541 aa21.24■□□□□ 0.99
VPS35-202ENST00000561713 MRPL9Q9BYD2 267 aaKnown RBP21.24■□□□□ 0.99
VPS35-202ENST00000561713 LIMD1Q9UGP4 676 aa21.24■□□□□ 0.99
VPS35-202ENST00000561713 TDRD15B5MCY1 1934 aaKnown RBP21.23■□□□□ 0.99
VPS35-202ENST00000561713 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP21.23■□□□□ 0.99
VPS35-202ENST00000561713 ZBTB39O15060 712 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms