RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 METTL13Q8N6R0 699 aa23.28■■□□□ 1.32
CLN3-209ENST00000561689 MKNK1Q9BUB5 465 aa23.28■■□□□ 1.32
CLN3-209ENST00000561689 HSPBP1Q9NZL4 362 aa23.28■■□□□ 1.32
CLN3-209ENST00000561689 CGNQ9P2M7 1197 aaKnown RBP23.28■■□□□ 1.32
CLN3-209ENST00000561689 USP20Q9Y2K6 914 aa23.28■■□□□ 1.32
CLN3-209ENST00000561689 CENPFP49454 3210 aa23.27■■□□□ 1.32
CLN3-209ENST00000561689 ZNF500O60304 480 aaPredicted RBP23.27■■□□□ 1.32
CLN3-209ENST00000561689 TRPA1O75762 1119 aa23.27■■□□□ 1.32
CLN3-209ENST00000561689 ADSSP30520 456 aa23.27■■□□□ 1.32
CLN3-209ENST00000561689 HTRA3P83110 453 aa23.27■■□□□ 1.32
CLN3-209ENST00000561689 PRKCZQ05513 592 aa23.27■■□□□ 1.32
CLN3-209ENST00000561689 MYBPC2Q14324 1141 aa23.27■■□□□ 1.32
CLN3-209ENST00000561689 TMEM139Q8IV31 216 aa23.27■■□□□ 1.32
CLN3-209ENST00000561689 CNGA4Q8IV77 575 aa23.27■■□□□ 1.32
CLN3-209ENST00000561689 C12orf56Q8IXR9 622 aa23.27■■□□□ 1.32
CLN3-209ENST00000561689 EXOC8Q8IYI6 725 aa23.27■■□□□ 1.32
CLN3-209ENST00000561689 ZSWIM2Q8NEG5 633 aa23.27■■□□□ 1.32
CLN3-209ENST00000561689 TCP11Q8WWU5 503 aa23.27■■□□□ 1.32
CLN3-209ENST00000561689 BAG1Q99933 345 aaPredicted RBP23.27■■□□□ 1.32
CLN3-209ENST00000561689 MMRN2Q9H8L6 949 aa23.27■■□□□ 1.32
CLN3-209ENST00000561689 FAM207AQ9NSI2 230 aaPredicted RBP23.27■■□□□ 1.32
CLN3-209ENST00000561689 A6NJR5 290 aa23.27■■□□□ 1.32
CLN3-209ENST00000561689 NRDCO43847 1150 aa23.27■■□□□ 1.32
CLN3-209ENST00000561689 ZNF484Q5JVG2 852 aa23.27■■□□□ 1.32
CLN3-209ENST00000561689 EFCAB12Q6NXP0 572 aa23.27■■□□□ 1.32
CLN3-209ENST00000561689 SLC39A4Q6P5W5 647 aa23.27■■□□□ 1.32
CLN3-209ENST00000561689 CCDC112Q8NEF3 446 aa23.27■■□□□ 1.32
CLN3-209ENST00000561689 PSPC1Q8WXF1 523 aaKnown RBP23.27■■□□□ 1.32
CLN3-209ENST00000561689 SLC35C1Q96A29 364 aa23.27■■□□□ 1.32
CLN3-209ENST00000561689 BICD1Q96G01 975 aa23.27■■□□□ 1.32
CLN3-209ENST00000561689 PANX2Q96RD6 677 aa23.27■■□□□ 1.32
CLN3-209ENST00000561689 CRACR2AQ9BSW2 395 aa23.27■■□□□ 1.32
CLN3-209ENST00000561689 SUCLA2Q9P2R7 463 aaPredicted RBP23.27■■□□□ 1.32
CLN3-209ENST00000561689 HNRNPDLO14979 420 aaKnown RBP23.26■■□□□ 1.31
CLN3-209ENST00000561689 GAS2O43903 313 aaKnown RBP23.26■■□□□ 1.31
CLN3-209ENST00000561689 C22orf31O95567 290 aa23.26■■□□□ 1.31
CLN3-209ENST00000561689 GJB1P08034 283 aa23.26■■□□□ 1.31
CLN3-209ENST00000561689 SRGAP2CP0DJJ0 459 aa23.26■■□□□ 1.31
CLN3-209ENST00000561689 KRT9P35527 623 aa23.26■■□□□ 1.31
CLN3-209ENST00000561689 CLCN3P51790 818 aa23.26■■□□□ 1.31
CLN3-209ENST00000561689 CHMP4BP1P59074 171 aa23.26■■□□□ 1.31
CLN3-209ENST00000561689 SNRPFP62306 86 aaKnown RBP23.26■■□□□ 1.31
CLN3-209ENST00000561689 SP3Q02447 781 aa23.26■■□□□ 1.31
CLN3-209ENST00000561689 LAMTOR4Q0VGL1 99 aa23.26■■□□□ 1.31
CLN3-209ENST00000561689 TRIB2Q92519 343 aa23.26■■□□□ 1.31
CLN3-209ENST00000561689 JPH2Q9BR39 696 aaPredicted RBP23.26■■□□□ 1.31
CLN3-209ENST00000561689 K7ERI5 159 aa23.25■■□□□ 1.31
CLN3-209ENST00000561689 EPHB6O15197 1021 aa23.25■■□□□ 1.31
CLN3-209ENST00000561689 AFPP02771 609 aaKnown RBP23.25■■□□□ 1.31
CLN3-209ENST00000561689 KLRC1P26715 233 aa23.25■■□□□ 1.31
CLN3-209ENST00000561689 KCNMA1Q12791 1236 aa23.25■■□□□ 1.31
CLN3-209ENST00000561689 STRN3Q13033 797 aa23.25■■□□□ 1.31
CLN3-209ENST00000561689 XXYLT1Q8NBI6 393 aa23.25■■□□□ 1.31
CLN3-209ENST00000561689 TRPV1Q8NER1 839 aa23.25■■□□□ 1.31
CLN3-209ENST00000561689 TMEM174Q8WUU8 243 aa23.25■■□□□ 1.31
CLN3-209ENST00000561689 NUP58Q9BVL2 599 aa23.25■■□□□ 1.31
CLN3-209ENST00000561689 TTYH3Q9C0H2 523 aa23.25■■□□□ 1.31
CLN3-209ENST00000561689 AGPAT5Q9NUQ2 364 aa23.25■■□□□ 1.31
CLN3-209ENST00000561689 CAPN11Q9UMQ6 739 aa23.25■■□□□ 1.31
CLN3-209ENST00000561689 ZSWIM8A7E2V4 1837 aa23.25■■□□□ 1.31
CLN3-209ENST00000561689 GOLGA8IPA6NC78 632 aa23.25■■□□□ 1.31
CLN3-209ENST00000561689 GOLGA8JA6NMD2 632 aa23.25■■□□□ 1.31
CLN3-209ENST00000561689 VEGFBP49765 207 aa23.25■■□□□ 1.31
CLN3-209ENST00000561689 BRDTQ58F21 947 aaPredicted RBP23.25■■□□□ 1.31
CLN3-209ENST00000561689 RHPN2Q8IUC4 686 aa23.25■■□□□ 1.31
CLN3-209ENST00000561689 RETREG2Q8NC44 543 aa23.25■■□□□ 1.31
CLN3-209ENST00000561689 ZNF668Q96K58 619 aaPredicted RBP23.25■■□□□ 1.31
CLN3-209ENST00000561689 ABHD10Q9NUJ1 306 aa23.25■■□□□ 1.31
CLN3-209ENST00000561689 RNF186Q9NXI6 227 aa23.25■■□□□ 1.31
CLN3-209ENST00000561689 LUC7L2Q9Y383 392 aaKnown RBP23.25■■□□□ 1.31
CLN3-209ENST00000561689 ADCY3O60266 1144 aa23.24■■□□□ 1.31
CLN3-209ENST00000561689 ABCD1P33897 745 aa23.24■■□□□ 1.31
CLN3-209ENST00000561689 PPP2R3AQ06190 1150 aa23.24■■□□□ 1.31
CLN3-209ENST00000561689 MXD4Q14582 209 aaPredicted RBP23.24■■□□□ 1.31
CLN3-209ENST00000561689 NOLC1Q14978 699 aaKnown RBP eCLIP23.24■■□□□ 1.31
CLN3-209ENST00000561689 RNF149Q8NC42 400 aa23.24■■□□□ 1.31
CLN3-209ENST00000561689 SAAL1Q96ER3 474 aa23.24■■□□□ 1.31
CLN3-209ENST00000561689 KIF22Q14807 665 aa23.23■■□□□ 1.31
CLN3-209ENST00000561689 POMGNT1Q8WZA1 660 aa23.23■■□□□ 1.31
CLN3-209ENST00000561689 CCDC51Q96ER9 411 aa23.23■■□□□ 1.31
CLN3-209ENST00000561689 AP5M1Q9H0R1 490 aa23.23■■□□□ 1.31
CLN3-209ENST00000561689 TRIM49P0CI25 452 aa23.23■■□□□ 1.31
CLN3-209ENST00000561689 TRIM49CP0CI26 452 aa23.23■■□□□ 1.31
CLN3-209ENST00000561689 LIG4P49917 911 aa23.23■■□□□ 1.31
CLN3-209ENST00000561689 BEX3Q00994 111 aa23.23■■□□□ 1.31
CLN3-209ENST00000561689 PPFIA1Q13136 1202 aa23.23■■□□□ 1.31
CLN3-209ENST00000561689 MFSD14CQ5VZR4 134 aa23.23■■□□□ 1.31
CLN3-209ENST00000561689 PPP1R13LQ8WUF5 828 aa23.23■■□□□ 1.31
CLN3-209ENST00000561689 STX10O60499 249 aa23.22■■□□□ 1.31
CLN3-209ENST00000561689 AKR1A1P14550 325 aa23.22■■□□□ 1.31
CLN3-209ENST00000561689 APBA1Q02410 837 aa23.22■■□□□ 1.31
CLN3-209ENST00000561689 GRIK4Q16099 956 aa23.22■■□□□ 1.31
CLN3-209ENST00000561689 NLRP4Q96MN2 994 aa23.22■■□□□ 1.31
CLN3-209ENST00000561689 LSM14BQ9BX40 385 aaKnown RBP23.22■■□□□ 1.31
CLN3-209ENST00000561689 TULP1O00294 542 aaPredicted RBP23.21■■□□□ 1.31
CLN3-209ENST00000561689 EDN1P05305 212 aa23.21■■□□□ 1.31
CLN3-209ENST00000561689 SCP2P22307 547 aa23.21■■□□□ 1.31
CLN3-209ENST00000561689 BFSP1Q12934 665 aa23.21■■□□□ 1.31
CLN3-209ENST00000561689 TRIM32Q13049 653 aa23.21■■□□□ 1.31
CLN3-209ENST00000561689 FIGNQ5HY92 759 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms