RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 CHMP2AO43633 222 aa18.46■□□□□ 0.55
CLN3-208ENST00000561505 TDP2O95551 362 aa18.46■□□□□ 0.55
CLN3-208ENST00000561505 NLRP5P59047 1200 aa18.46■□□□□ 0.55
CLN3-208ENST00000561505 MTMR3Q13615 1198 aa18.46■□□□□ 0.55
CLN3-208ENST00000561505 BMS1Q14692 1282 aaKnown RBP18.46■□□□□ 0.55
CLN3-208ENST00000561505 MTERF2Q49AM1 385 aa18.46■□□□□ 0.55
CLN3-208ENST00000561505 NOMO2Q5JPE7 1267 aa18.46■□□□□ 0.55
CLN3-208ENST00000561505 BLIDQ8IZY5 108 aa18.46■□□□□ 0.55
CLN3-208ENST00000561505 PLCD3Q8N3E9 789 aa18.46■□□□□ 0.55
CLN3-208ENST00000561505 ZNF274Q96GC6 653 aaPredicted RBP18.46■□□□□ 0.55
CLN3-208ENST00000561505 ZSWIM6Q9HCJ5 1215 aa18.46■□□□□ 0.55
CLN3-208ENST00000561505 SUCLA2Q9P2R7 463 aaPredicted RBP18.46■□□□□ 0.55
CLN3-208ENST00000561505 STK39Q9UEW8 545 aa18.46■□□□□ 0.55
CLN3-208ENST00000561505 MYO10Q9HD67 2058 aa18.46■□□□□ 0.55
CLN3-208ENST00000561505 GALR2O43603 387 aaPredicted RBP18.45■□□□□ 0.54
CLN3-208ENST00000561505 B4GALT3O60512 393 aa18.45■□□□□ 0.54
CLN3-208ENST00000561505 DEXIO95424 95 aa18.45■□□□□ 0.54
CLN3-208ENST00000561505 PAPLNO95428 1278 aa18.45■□□□□ 0.54
CLN3-208ENST00000561505 EFEMP2O95967 443 aa18.45■□□□□ 0.54
CLN3-208ENST00000561505 PSMC5P62195 406 aa18.45■□□□□ 0.54
CLN3-208ENST00000561505 PPP2R5CQ13362 524 aa18.45■□□□□ 0.54
CLN3-208ENST00000561505 GLB1LQ6UWU2 654 aa18.45■□□□□ 0.54
CLN3-208ENST00000561505 LPPQ93052 612 aa18.45■□□□□ 0.54
CLN3-208ENST00000561505 SCLT1Q96NL6 688 aa18.45■□□□□ 0.54
CLN3-208ENST00000561505 JPH2Q9BR39 696 aaPredicted RBP18.45■□□□□ 0.54
CLN3-208ENST00000561505 KCNMB3Q9NPA1 279 aa18.45■□□□□ 0.54
CLN3-208ENST00000561505 AGPAT5Q9NUQ2 364 aa18.45■□□□□ 0.54
CLN3-208ENST00000561505 SEPT9Q9UHD8 586 aaPredicted RBP18.45■□□□□ 0.54
CLN3-208ENST00000561505 INPPL1O15357 1258 aa18.44■□□□□ 0.54
CLN3-208ENST00000561505 EPCAMP16422 314 aa18.44■□□□□ 0.54
CLN3-208ENST00000561505 HOXA11P31270 313 aaPredicted RBP18.44■□□□□ 0.54
CLN3-208ENST00000561505 SLC11A1P49279 550 aa18.44■□□□□ 0.54
CLN3-208ENST00000561505 PTPN14Q15678 1187 aa18.44■□□□□ 0.54
CLN3-208ENST00000561505 ATAT1Q5SQI0 421 aa18.44■□□□□ 0.54
CLN3-208ENST00000561505 TWF2Q6IBS0 349 aaKnown RBP18.44■□□□□ 0.54
CLN3-208ENST00000561505 AGMOQ6ZNB7 445 aa18.44■□□□□ 0.54
CLN3-208ENST00000561505 RUFY3Q7L099 469 aa18.44■□□□□ 0.54
CLN3-208ENST00000561505 GPR149Q86SP6 731 aa18.44■□□□□ 0.54
CLN3-208ENST00000561505 PPFIBP1Q86W92 1011 aa18.44■□□□□ 0.54
CLN3-208ENST00000561505 RHOBTB2Q9BYZ6 727 aa18.44■□□□□ 0.54
CLN3-208ENST00000561505 DHX33Q9H6R0 707 aaKnown RBP18.44■□□□□ 0.54
CLN3-208ENST00000561505 VAV3Q9UKW4 847 aa18.44■□□□□ 0.54
CLN3-208ENST00000561505 DENND4AQ7Z401 1863 aa18.43■□□□□ 0.54
CLN3-208ENST00000561505 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.43■□□□□ 0.54
CLN3-208ENST00000561505 DDX11L8A8MPP1 907 aa18.43■□□□□ 0.54
CLN3-208ENST00000561505 EML1O00423 815 aa18.43■□□□□ 0.54
CLN3-208ENST00000561505 ZC3H11AO75152 810 aaKnown RBP eCLIP18.43■□□□□ 0.54
CLN3-208ENST00000561505 CCT2P78371 535 aaKnown RBP18.43■□□□□ 0.54
CLN3-208ENST00000561505 SSRP1Q08945 709 aaKnown RBP18.43■□□□□ 0.54
CLN3-208ENST00000561505 UBXN11Q5T124 520 aa18.43■□□□□ 0.54
CLN3-208ENST00000561505 RARS2Q5T160 578 aaKnown RBP18.43■□□□□ 0.54
CLN3-208ENST00000561505 PPP4R3AQ6IN85 833 aa18.43■□□□□ 0.54
CLN3-208ENST00000561505 ZNF280BQ86YH2 543 aa18.43■□□□□ 0.54
CLN3-208ENST00000561505 RHPN2Q8IUC4 686 aa18.43■□□□□ 0.54
CLN3-208ENST00000561505 KSR1Q8IVT5 923 aa18.43■□□□□ 0.54
CLN3-208ENST00000561505 EXOC8Q8IYI6 725 aa18.43■□□□□ 0.54
CLN3-208ENST00000561505 TRIM22Q8IYM9 498 aa18.43■□□□□ 0.54
CLN3-208ENST00000561505 C12orf76Q8N812 135 aaPredicted RBP18.43■□□□□ 0.54
CLN3-208ENST00000561505 AUTS2Q8WXX7 1259 aa18.43■□□□□ 0.54
CLN3-208ENST00000561505 PGBD4Q96DM1 585 aa18.43■□□□□ 0.54
CLN3-208ENST00000561505 FAM20AQ96MK3 541 aa18.43■□□□□ 0.54
CLN3-208ENST00000561505 SH2D3AQ9BRG2 576 aa18.43■□□□□ 0.54
CLN3-208ENST00000561505 TM6SF1Q9BZW5 370 aa18.43■□□□□ 0.54
CLN3-208ENST00000561505 CYP26B1Q9NR63 512 aa18.43■□□□□ 0.54
CLN3-208ENST00000561505 DNAJB4Q9UDY4 337 aa18.43■□□□□ 0.54
CLN3-208ENST00000561505 PIN4Q9Y237 131 aaKnown RBP18.43■□□□□ 0.54
CLN3-208ENST00000561505 PLXNA3P51805 1871 aa18.43■□□□□ 0.54
CLN3-208ENST00000561505 DDHD2O94830 711 aa18.42■□□□□ 0.54
CLN3-208ENST00000561505 NBL1P41271 181 aa18.42■□□□□ 0.54
CLN3-208ENST00000561505 QARSP47897 775 aaKnown RBP18.42■□□□□ 0.54
CLN3-208ENST00000561505 CLCN5P51795 746 aa18.42■□□□□ 0.54
CLN3-208ENST00000561505 KANK3Q6NY19 840 aa18.42■□□□□ 0.54
CLN3-208ENST00000561505 CATSPER4Q7RTX7 472 aa18.42■□□□□ 0.54
CLN3-208ENST00000561505 SRGAP1Q7Z6B7 1085 aa18.42■□□□□ 0.54
CLN3-208ENST00000561505 ZBTB33Q86T24 672 aa18.42■□□□□ 0.54
CLN3-208ENST00000561505 RNF168Q8IYW5 571 aaPredicted RBP18.42■□□□□ 0.54
CLN3-208ENST00000561505 TMEM105Q8N8V8 129 aa18.42■□□□□ 0.54
CLN3-208ENST00000561505 TMEM175Q9BSA9 504 aa18.42■□□□□ 0.54
CLN3-208ENST00000561505 KANSL3Q9P2N6 904 aa18.42■□□□□ 0.54
CLN3-208ENST00000561505 WRAP73Q9P2S5 460 aaPredicted RBP18.42■□□□□ 0.54
CLN3-208ENST00000561505 PCDHB2Q9Y5E7 798 aa18.42■□□□□ 0.54
CLN3-208ENST00000561505 CNTNAP2Q9UHC6 1331 aa18.42■□□□□ 0.54
CLN3-208ENST00000561505 SLC37A4O43826 429 aa18.41■□□□□ 0.54
CLN3-208ENST00000561505 REC8O95072 547 aa18.41■□□□□ 0.54
CLN3-208ENST00000561505 C1RP00736 705 aa18.41■□□□□ 0.54
CLN3-208ENST00000561505 WEE2P0C1S8 567 aa18.41■□□□□ 0.54
CLN3-208ENST00000561505 SP100P23497 879 aaPredicted RBP18.41■□□□□ 0.54
CLN3-208ENST00000561505 CLCN4P51793 760 aa18.41■□□□□ 0.54
CLN3-208ENST00000561505 NONOQ15233 471 aaKnown RBP eCLIP18.41■□□□□ 0.54
CLN3-208ENST00000561505 C15orf39Q6ZRI6 1047 aa18.41■□□□□ 0.54
CLN3-208ENST00000561505 KRT25Q7Z3Z0 450 aa18.41■□□□□ 0.54
CLN3-208ENST00000561505 C4orf19Q8IY42 314 aa18.41■□□□□ 0.54
CLN3-208ENST00000561505 ZNF579Q8NAF0 562 aaKnown RBP18.41■□□□□ 0.54
CLN3-208ENST00000561505 TDRD5Q8NAT2 981 aaKnown RBP18.41■□□□□ 0.54
CLN3-208ENST00000561505 CMASQ8NFW8 434 aaPredicted RBP18.41■□□□□ 0.54
CLN3-208ENST00000561505 FEZF2Q8TBJ5 459 aa18.41■□□□□ 0.54
CLN3-208ENST00000561505 PRPF31Q8WWY3 499 aaKnown RBP18.41■□□□□ 0.54
CLN3-208ENST00000561505 KLHL5Q96PQ7 755 aa18.41■□□□□ 0.54
CLN3-208ENST00000561505 MINDY3Q9H8M7 445 aa18.41■□□□□ 0.54
CLN3-208ENST00000561505 LIMD1Q9UGP4 676 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms