RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 DCAF8Q5TAQ9 597 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 LRIG3Q6UXM1 1119 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 MICALCLQ6ZW33 695 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 CCDC114Q96M63 670 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 YIPF2Q9BWQ6 316 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 AMNQ9BXJ7 453 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 MAF1Q9H063 256 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 METTL14Q9HCE5 456 aaKnown RBP12.24□□□□□ -0.45
CUX1-218ENST00000560541 ERVK-5Q9HDB9 667 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 SUCLA2Q9P2R7 463 aaPredicted RBP12.24□□□□□ -0.45
CUX1-218ENST00000560541 DNAJC12Q9UKB3 198 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 UTP11Q9Y3A2 253 aaKnown RBP12.24□□□□□ -0.45
CUX1-218ENST00000560541 A0A1B0GVG6 124 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 F8VZ95 297 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 PPEF1O14829 653 aaPredicted RBP12.24□□□□□ -0.45
CUX1-218ENST00000560541 RINT1Q6NUQ1 792 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 TLDC1Q6P9B6 456 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 SLFN11Q7Z7L1 901 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 FAM228AQ86W67 206 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 ARFGAP2Q8N6H7 521 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 CRYGNQ8WXF5 182 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 HES6Q96HZ4 224 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 MBOAT7Q96N66 472 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 ZNF831Q5JPB2 1677 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 GMNCA6NCL1 334 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 PHF20L1A8MW92 1017 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 F5H6K3 240 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 CCDC188H7C350 402 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 FERP16591 822 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 KLRC3Q07444 240 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 EMC10Q5UCC4 262 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 FBXO11Q86XK2 927 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 SYCE1Q8N0S2 351 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 UHMK1Q8TAS1 419 aaKnown RBP12.24□□□□□ -0.45
CUX1-218ENST00000560541 CTNNBL1Q8WYA6 563 aaPredicted RBP12.24□□□□□ -0.45
CUX1-218ENST00000560541 TEKT1Q969V4 418 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 RSRC1Q96IZ7 334 aaKnown RBP12.24□□□□□ -0.45
CUX1-218ENST00000560541 THAP2Q9H0W7 228 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 VAV3Q9UKW4 847 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 NENFQ9UMX5 172 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 SMCHD1A6NHR9 2005 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 ZMYM2Q9UBW7 1377 aa12.23□□□□□ -0.45
CUX1-218ENST00000560541 TMEM110-MUSTN1A8MSY1 372 aa12.23□□□□□ -0.45
CUX1-218ENST00000560541 CAPN15O75808 1086 aa12.23□□□□□ -0.45
CUX1-218ENST00000560541 FSBPO95073 299 aa12.23□□□□□ -0.45
CUX1-218ENST00000560541 SOX5P35711 763 aa12.23□□□□□ -0.45
CUX1-218ENST00000560541 PPP2R2AP63151 447 aa12.23□□□□□ -0.45
CUX1-218ENST00000560541 AP3B2Q13367 1082 aa12.23□□□□□ -0.45
CUX1-218ENST00000560541 VPS72Q15906 364 aa12.23□□□□□ -0.45
CUX1-218ENST00000560541 RUFY4Q6ZNE9 571 aa12.23□□□□□ -0.45
CUX1-218ENST00000560541 MAEAQ7L5Y9 396 aa12.23□□□□□ -0.45
CUX1-218ENST00000560541 SIAH1Q8IUQ4 282 aa12.23□□□□□ -0.45
CUX1-218ENST00000560541 CCDC13Q8IYE1 715 aa12.23□□□□□ -0.45
CUX1-218ENST00000560541 RASGEF1CQ8N431 466 aa12.23□□□□□ -0.45
CUX1-218ENST00000560541 OLIG1Q8TAK6 271 aa12.23□□□□□ -0.45
CUX1-218ENST00000560541 COA1Q9GZY4 146 aa12.23□□□□□ -0.45
CUX1-218ENST00000560541 DBNDD1Q9H9R9 158 aa12.23□□□□□ -0.45
CUX1-218ENST00000560541 TPX2Q9ULW0 747 aaKnown RBP12.23□□□□□ -0.45
CUX1-218ENST00000560541 TLDC2A0PJX2 215 aa12.23□□□□□ -0.45
CUX1-218ENST00000560541 MAFGO15525 162 aa12.23□□□□□ -0.45
CUX1-218ENST00000560541 SHBGP04278 402 aa12.23□□□□□ -0.45
CUX1-218ENST00000560541 PAX3P23760 479 aa12.23□□□□□ -0.45
CUX1-218ENST00000560541 MYO1EQ12965 1108 aa12.23□□□□□ -0.45
CUX1-218ENST00000560541 MKRN4PQ13434 485 aaPredicted RBP12.23□□□□□ -0.45
CUX1-218ENST00000560541 LLGL1Q15334 1064 aa12.23□□□□□ -0.45
CUX1-218ENST00000560541 PARP9Q8IXQ6 854 aa12.23□□□□□ -0.45
CUX1-218ENST00000560541 RAPGEF5Q92565 580 aa12.23□□□□□ -0.45
CUX1-218ENST00000560541 DYDC2Q96IM9 177 aa12.23□□□□□ -0.45
CUX1-218ENST00000560541 FMO2Q99518 471 aa12.23□□□□□ -0.45
CUX1-218ENST00000560541 GLT8D2Q9H1C3 349 aa12.23□□□□□ -0.45
CUX1-218ENST00000560541 SLITRK6Q9H5Y7 841 aa12.23□□□□□ -0.45
CUX1-218ENST00000560541 NDUFB10O96000 172 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 KRT13P13646 458 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 PSMC2P35998 433 aaKnown RBP12.22□□□□□ -0.45
CUX1-218ENST00000560541 FMO5P49326 533 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 PLTPP55058 493 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 Q4G0T1 1027 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 UBAP2Q5T6F2 1119 aaKnown RBP12.22□□□□□ -0.45
CUX1-218ENST00000560541 ATP8B4Q8TF62 1192 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 COG5Q9UP83 839 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 SNX24Q9Y343 169 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 ATAD5Q96QE3 1844 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 OPLAHO14841 1288 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 SLC16A3O15427 465 aaKnown RBP12.22□□□□□ -0.45
CUX1-218ENST00000560541 TRAPPC3O43617 180 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 SREBF1P36956 1147 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 CCDC121Q6ZUS5 278 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 SPATS2Q86XZ4 545 aaKnown RBP12.22□□□□□ -0.45
CUX1-218ENST00000560541 SLC30A5Q8TAD4 765 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.22□□□□□ -0.455e-7■■■■■ 64.8
CUX1-218ENST00000560541 RFFLQ8WZ73 363 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 ALG3Q92685 438 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 PNMA2Q9UL42 364 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 BLOC1S6Q9UL45 172 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 PCDHGA4Q9Y5G9 962 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 GOLGA6L7A0A1B0GV03 622 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 DDX3YO15523 660 aaKnown RBP12.22□□□□□ -0.45
CUX1-218ENST00000560541 EYA4O95677 639 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 CFBP00751 764 aa12.22□□□□□ -0.45
CUX1-218ENST00000560541 SETSIPP0DME0 302 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms