RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 OXER1Q8TDS5 423 aa14.03□□□□□ -0.16
SNX1-209ENST00000559961 GTF3C6Q969F1 213 aa14.03□□□□□ -0.16
SNX1-209ENST00000559961 TMEM143Q96AN5 459 aa14.03□□□□□ -0.16
SNX1-209ENST00000559961 DYDC2Q96IM9 177 aa14.03□□□□□ -0.16
SNX1-209ENST00000559961 MSLNLQ96KJ4 702 aa14.03□□□□□ -0.16
SNX1-209ENST00000559961 MFSD14AQ96MC6 490 aa14.03□□□□□ -0.16
SNX1-209ENST00000559961 PHF7Q9BWX1 381 aaPredicted RBP14.03□□□□□ -0.16
SNX1-209ENST00000559961 GBP3Q9H0R5 595 aa14.03□□□□□ -0.16
SNX1-209ENST00000559961 CLEC1BQ9P126 229 aa14.03□□□□□ -0.16
SNX1-209ENST00000559961 CNTNAP2Q9UHC6 1331 aa14.02□□□□□ -0.17
SNX1-209ENST00000559961 FSCN2O14926 492 aa14.02□□□□□ -0.17
SNX1-209ENST00000559961 NEMFO60524 1076 aa14.02□□□□□ -0.17
SNX1-209ENST00000559961 ZNF623O75123 536 aa14.02□□□□□ -0.17
SNX1-209ENST00000559961 STBD1O95210 358 aa14.02□□□□□ -0.17
SNX1-209ENST00000559961 ALDH2P05091 517 aa14.02□□□□□ -0.17
SNX1-209ENST00000559961 TXKP42681 527 aa14.02□□□□□ -0.17
SNX1-209ENST00000559961 CYP4A11Q02928 519 aa14.02□□□□□ -0.17
SNX1-209ENST00000559961 LAMTOR4Q0VGL1 99 aa14.02□□□□□ -0.17
SNX1-209ENST00000559961 NR5A1Q13285 461 aa14.02□□□□□ -0.17
SNX1-209ENST00000559961 CTTNQ14247 550 aaKnown RBP14.02□□□□□ -0.17
SNX1-209ENST00000559961 EMC2Q15006 297 aa14.02□□□□□ -0.17
SNX1-209ENST00000559961 LONRF3Q496Y0 759 aa14.02□□□□□ -0.17
SNX1-209ENST00000559961 ELMSAN1Q6PJG2 1045 aa14.02□□□□□ -0.17
SNX1-209ENST00000559961 LRRC55Q6ZSA7 311 aa14.02□□□□□ -0.17
SNX1-209ENST00000559961 ZBTB33Q86T24 672 aa14.02□□□□□ -0.17
SNX1-209ENST00000559961 ZNF598Q86UK7 904 aaKnown RBP14.02□□□□□ -0.17
SNX1-209ENST00000559961 RNF135Q8IUD6 432 aa14.02□□□□□ -0.17
SNX1-209ENST00000559961 KSR1Q8IVT5 923 aa14.02□□□□□ -0.17
SNX1-209ENST00000559961 DIS3L2Q8IYB7 885 aaKnown RBP14.02□□□□□ -0.17
SNX1-209ENST00000559961 RNF149Q8NC42 400 aa14.02□□□□□ -0.17
SNX1-209ENST00000559961 KHSRPQ92945 711 aaKnown RBP eCLIP14.02□□□□□ -0.172e-6■■□□□ 11.4
SNX1-209ENST00000559961 RPGRIP1Q96KN7 1286 aa14.02□□□□□ -0.17
SNX1-209ENST00000559961 TRIM6Q9C030 488 aaPredicted RBP14.02□□□□□ -0.17
SNX1-209ENST00000559961 RGL1Q9NZL6 768 aa14.02□□□□□ -0.17
SNX1-209ENST00000559961 RAPGEFL1Q9UHV5 662 aa14.02□□□□□ -0.17
SNX1-209ENST00000559961 NR2E1Q9Y466 385 aa14.02□□□□□ -0.17
SNX1-209ENST00000559961 USP15Q9Y4E8 981 aaPredicted RBP14.02□□□□□ -0.17
SNX1-209ENST00000559961 PCDHB2Q9Y5E7 798 aa14.02□□□□□ -0.17
SNX1-209ENST00000559961 PCDHGC5Q9Y5F6 944 aa14.02□□□□□ -0.17
SNX1-209ENST00000559961 XIRP2A4UGR9 3374 aa14.02□□□□□ -0.17
SNX1-209ENST00000559961 DGAT1O75907 488 aa14.01□□□□□ -0.17
SNX1-209ENST00000559961 ATF7P17544 494 aaPredicted RBP14.01□□□□□ -0.17
SNX1-209ENST00000559961 ATP2B1P20020 1258 aa14.01□□□□□ -0.17
SNX1-209ENST00000559961 AXLP30530 894 aa14.01□□□□□ -0.17
SNX1-209ENST00000559961 PBX3P40426 434 aa14.01□□□□□ -0.17
SNX1-209ENST00000559961 FOSBP53539 338 aa14.01□□□□□ -0.17
SNX1-209ENST00000559961 ME3Q16798 604 aa14.01□□□□□ -0.17
SNX1-209ENST00000559961 ANKRD54Q6NXT1 300 aa14.01□□□□□ -0.17
SNX1-209ENST00000559961 TMEM184AQ6ZMB5 413 aa14.01□□□□□ -0.17
SNX1-209ENST00000559961 PPFIBP1Q86W92 1011 aa14.01□□□□□ -0.17
SNX1-209ENST00000559961 VPS52Q8N1B4 723 aa14.01□□□□□ -0.17
SNX1-209ENST00000559961 SLC39A11Q8N1S5 342 aa14.01□□□□□ -0.17
SNX1-209ENST00000559961 MRPL43Q8N983 215 aaKnown RBP14.01□□□□□ -0.17
SNX1-209ENST00000559961 FAM184AQ8NB25 1140 aa14.01□□□□□ -0.17
SNX1-209ENST00000559961 ERMNQ8TAM6 284 aa14.01□□□□□ -0.17
SNX1-209ENST00000559961 HAS1Q92839 578 aa14.01□□□□□ -0.17
SNX1-209ENST00000559961 CEP89Q96ST8 783 aa14.01□□□□□ -0.17
SNX1-209ENST00000559961 EIF2AK1Q9BQI3 630 aaKnown RBP14.01□□□□□ -0.17
SNX1-209ENST00000559961 DHX33Q9H6R0 707 aaKnown RBP14.01□□□□□ -0.17
SNX1-209ENST00000559961 TTC12Q9H892 705 aaPredicted RBP14.01□□□□□ -0.17
SNX1-209ENST00000559961 BMP2KQ9NSY1 1161 aaPredicted RBP14.01□□□□□ -0.17
SNX1-209ENST00000559961 GJB4Q9NTQ9 266 aa14.01□□□□□ -0.17
SNX1-209ENST00000559961 ANKEF1Q9NU02 776 aa14.01□□□□□ -0.17
SNX1-209ENST00000559961 AGPAT5Q9NUQ2 364 aa14.01□□□□□ -0.17
SNX1-209ENST00000559961 RNF19AQ9NV58 838 aa14.01□□□□□ -0.17
SNX1-209ENST00000559961 HCSTQ9UBK5 93 aa14.01□□□□□ -0.17
SNX1-209ENST00000559961 MYH9P35579 1960 aaKnown RBP14□□□□□ -0.17
SNX1-209ENST00000559961 NCOR1O75376 2440 aa14□□□□□ -0.17
SNX1-209ENST00000559961 NLRC5Q86WI3 1866 aa14□□□□□ -0.17
SNX1-209ENST00000559961 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14□□□□□ -0.17
SNX1-209ENST00000559961 BTBD18B2RXH4 712 aa14□□□□□ -0.17
SNX1-209ENST00000559961 NT5C1B-RDH14C9J2C7 533 aa14□□□□□ -0.17
SNX1-209ENST00000559961 INO80B-WBP1J3KQ70 363 aa14□□□□□ -0.17
SNX1-209ENST00000559961 CTDNEP1O95476 244 aa14□□□□□ -0.17
SNX1-209ENST00000559961 ITGA4P13612 1032 aa14□□□□□ -0.17
SNX1-209ENST00000559961 ITIH3Q06033 890 aa14□□□□□ -0.17
SNX1-209ENST00000559961 CBX2Q14781 532 aaPredicted RBP14□□□□□ -0.17
SNX1-209ENST00000559961 TMEM132AQ24JP5 1023 aa14□□□□□ -0.17
SNX1-209ENST00000559961 HERC4Q5GLZ8 1057 aaPredicted RBP14□□□□□ -0.17
SNX1-209ENST00000559961 NOTUMQ6P988 496 aa14□□□□□ -0.17
SNX1-209ENST00000559961 DDX53Q86TM3 631 aaKnown RBP14□□□□□ -0.17
SNX1-209ENST00000559961 FERMT3Q86UX7 667 aa14□□□□□ -0.17
SNX1-209ENST00000559961 NSUN7Q8NE18 718 aaKnown RBP14□□□□□ -0.17
SNX1-209ENST00000559961 LPPQ93052 612 aa14□□□□□ -0.17
SNX1-209ENST00000559961 CCDC51Q96ER9 411 aa14□□□□□ -0.17
SNX1-209ENST00000559961 RIPOR3Q96MK2 946 aa14□□□□□ -0.17
SNX1-209ENST00000559961 NECTIN4Q96NY8 510 aa14□□□□□ -0.17
SNX1-209ENST00000559961 EMILIN2Q9BXX0 1053 aa14□□□□□ -0.17
SNX1-209ENST00000559961 RSAD1Q9HA92 442 aa14□□□□□ -0.17
SNX1-209ENST00000559961 IFT122Q9HBG6 1241 aa14□□□□□ -0.17
SNX1-209ENST00000559961 DZANK1Q9NVP4 752 aa14□□□□□ -0.17
SNX1-209ENST00000559961 MUTYHQ9UIF7 546 aa14□□□□□ -0.17
SNX1-209ENST00000559961 LIMCH1Q9UPQ0 1083 aa14□□□□□ -0.17
SNX1-209ENST00000559961 SSX2IPQ9Y2D8 614 aa14□□□□□ -0.17
SNX1-209ENST00000559961 FAN1Q9Y2M0 1017 aa14□□□□□ -0.17
SNX1-209ENST00000559961 HIDE1A8MVS5 230 aa13.99□□□□□ -0.17
SNX1-209ENST00000559961 SLITRK3O94933 977 aa13.99□□□□□ -0.17
SNX1-209ENST00000559961 XRCC6P12956 609 aaKnown RBP eCLIP13.99□□□□□ -0.17
SNX1-209ENST00000559961 EDAQ92838 391 aa13.99□□□□□ -0.17
SNX1-209ENST00000559961 IGSF21Q96ID5 467 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms