RNA–Protein interactions for RNA: ENST00000557358.1

VPS33B-206, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-206ENST00000557358 LRRC43Q8N309 656 aa15.31■□□□□ 0.04
VPS33B-206ENST00000557358 CNNM3Q8NE01 707 aa15.31■□□□□ 0.04
VPS33B-206ENST00000557358 DEPTORQ8TB45 409 aa15.31■□□□□ 0.04
VPS33B-206ENST00000557358 KIFAP3Q92845 792 aa15.31■□□□□ 0.04
VPS33B-206ENST00000557358 MRPL38Q96DV4 380 aaKnown RBP15.31■□□□□ 0.04
VPS33B-206ENST00000557358 TRAIPQ9BWF2 469 aa15.31■□□□□ 0.04
VPS33B-206ENST00000557358 NFKBIZQ9BYH8 718 aa15.31■□□□□ 0.04
VPS33B-206ENST00000557358 TRIM6Q9C030 488 aaPredicted RBP15.31■□□□□ 0.04
VPS33B-206ENST00000557358 BHMT2Q9H2M3 363 aa15.31■□□□□ 0.04
VPS33B-206ENST00000557358 RC3H2Q9HBD1 1191 aaKnown RBP15.31■□□□□ 0.04
VPS33B-206ENST00000557358 XPNPEP1Q9NQW7 623 aa15.31■□□□□ 0.04
VPS33B-206ENST00000557358 AGPAT5Q9NUQ2 364 aa15.31■□□□□ 0.04
VPS33B-206ENST00000557358 DAXXQ9UER7 740 aaPredicted RBP15.31■□□□□ 0.04
VPS33B-206ENST00000557358 KCNG1Q9UIX4 513 aa15.31■□□□□ 0.04
VPS33B-206ENST00000557358 A0A087WWV3 80 aa15.3■□□□□ 0.04
VPS33B-206ENST00000557358 STX6O43752 255 aa15.3■□□□□ 0.04
VPS33B-206ENST00000557358 EYA4O95677 639 aa15.3■□□□□ 0.04
VPS33B-206ENST00000557358 GLB1LQ6UWU2 654 aa15.3■□□□□ 0.04
VPS33B-206ENST00000557358 APBB1IPQ7Z5R6 666 aaPredicted RBP15.3■□□□□ 0.04
VPS33B-206ENST00000557358 P2RX5Q93086 422 aa15.3■□□□□ 0.04
VPS33B-206ENST00000557358 TIPINQ9BVW5 301 aa15.3■□□□□ 0.04
VPS33B-206ENST00000557358 FAM105AQ9NUU6 356 aa15.3■□□□□ 0.04
VPS33B-206ENST00000557358 THEGQ9P2T0 379 aa15.3■□□□□ 0.04
VPS33B-206ENST00000557358 MRPL42Q9Y6G3 142 aaKnown RBP15.3■□□□□ 0.04
VPS33B-206ENST00000557358 COL6A3P12111 3177 aa15.3■□□□□ 0.04
VPS33B-206ENST00000557358 PHLPP2Q6ZVD8 1323 aa15.29■□□□□ 0.04
VPS33B-206ENST00000557358 FGFR1P11362 822 aa15.29■□□□□ 0.04
VPS33B-206ENST00000557358 GLRA2P23416 452 aa15.29■□□□□ 0.04
VPS33B-206ENST00000557358 PPM1AP35813 382 aa15.29■□□□□ 0.04
VPS33B-206ENST00000557358 LONP1P36776 959 aaKnown RBP15.29■□□□□ 0.04
VPS33B-206ENST00000557358 TXLNAP40222 546 aa15.29■□□□□ 0.04
VPS33B-206ENST00000557358 CAPSQ13938 189 aa15.29■□□□□ 0.04
VPS33B-206ENST00000557358 BECN1Q14457 450 aa15.29■□□□□ 0.04
VPS33B-206ENST00000557358 BMS1Q14692 1282 aaKnown RBP15.29■□□□□ 0.04
VPS33B-206ENST00000557358 SF3A1Q15459 793 aaKnown RBP15.29■□□□□ 0.04
VPS33B-206ENST00000557358 IFNLR1Q8IU57 520 aaPredicted RBP15.29■□□□□ 0.04
VPS33B-206ENST00000557358 THNSL1Q8IYQ7 743 aa15.29■□□□□ 0.04
VPS33B-206ENST00000557358 CRIPAKQ8N1N5 446 aa15.29■□□□□ 0.04
VPS33B-206ENST00000557358 URGCPQ8TCY9 931 aa15.29■□□□□ 0.04
VPS33B-206ENST00000557358 ASAP3Q8TDY4 903 aa15.29■□□□□ 0.04
VPS33B-206ENST00000557358 PRIMPOLQ96LW4 560 aa15.29■□□□□ 0.04
VPS33B-206ENST00000557358 DRC1Q96MC2 740 aa15.29■□□□□ 0.04
VPS33B-206ENST00000557358 UBN1Q9NPG3 1134 aa15.29■□□□□ 0.04
VPS33B-206ENST00000557358 PRMT7Q9NVM4 692 aaPredicted RBP15.29■□□□□ 0.04
VPS33B-206ENST00000557358 PUF60Q9UHX1 559 aaKnown RBP15.29■□□□□ 0.04
VPS33B-206ENST00000557358 COG5Q9UP83 839 aa15.29■□□□□ 0.04
VPS33B-206ENST00000557358 CDH23Q9H251 3354 aa15.28■□□□□ 0.04
VPS33B-206ENST00000557358 CHD9Q3L8U1 2897 aa15.28■□□□□ 0.04
VPS33B-206ENST00000557358 CNTNAP2Q9UHC6 1331 aa15.28■□□□□ 0.04
VPS33B-206ENST00000557358 NCK2O43639 380 aa15.28■□□□□ 0.04
VPS33B-206ENST00000557358 ZNF623O75123 536 aa15.28■□□□□ 0.04
VPS33B-206ENST00000557358 SSBP05455 408 aaKnown RBP eCLIP15.28■□□□□ 0.04
VPS33B-206ENST00000557358 NAMPTP43490 491 aa15.28■□□□□ 0.04
VPS33B-206ENST00000557358 EFNA5P52803 228 aa15.28■□□□□ 0.04
VPS33B-206ENST00000557358 KRT17Q04695 432 aa15.28■□□□□ 0.04
VPS33B-206ENST00000557358 RNASELQ05823 741 aaKnown RBP15.28■□□□□ 0.04
VPS33B-206ENST00000557358 MAPK6Q16659 721 aa15.28■□□□□ 0.04
VPS33B-206ENST00000557358 SPRED2Q7Z698 418 aa15.28■□□□□ 0.04
VPS33B-206ENST00000557358 CABP7Q86V35 215 aa15.28■□□□□ 0.04
VPS33B-206ENST00000557358 FAM193BQ96PV7 902 aaPredicted RBP15.28■□□□□ 0.04
VPS33B-206ENST00000557358 TYW1Q9NV66 732 aaKnown RBP15.28■□□□□ 0.04
VPS33B-206ENST00000557358 KANSL3Q9P2N6 904 aa15.28■□□□□ 0.04
VPS33B-206ENST00000557358 PCDHB2Q9Y5E7 798 aa15.28■□□□□ 0.04
VPS33B-206ENST00000557358 FNDC1Q4ZHG4 1894 aaPredicted RBP15.28■□□□□ 0.04
VPS33B-206ENST00000557358 CHD7Q9P2D1 2997 aa15.28■□□□□ 0.04
VPS33B-206ENST00000557358 PP2D1A8MPX8 630 aa15.27■□□□□ 0.04
VPS33B-206ENST00000557358 LPXNO60711 386 aa15.27■□□□□ 0.04
VPS33B-206ENST00000557358 CDC25AP30304 524 aa15.27■□□□□ 0.04
VPS33B-206ENST00000557358 GATMP50440 423 aa15.27■□□□□ 0.04
VPS33B-206ENST00000557358 UBE3AQ05086 875 aa15.27■□□□□ 0.04
VPS33B-206ENST00000557358 DMP1Q13316 513 aaPredicted RBP15.27■□□□□ 0.04
VPS33B-206ENST00000557358 HELQQ8TDG4 1101 aa15.27■□□□□ 0.04
VPS33B-206ENST00000557358 ATXN2LQ8WWM7 1075 aaKnown RBP15.27■□□□□ 0.04
VPS33B-206ENST00000557358 SYMPKQ92797 1274 aaKnown RBP15.27■□□□□ 0.04
VPS33B-206ENST00000557358 ZNF396Q96N95 335 aaPredicted RBP15.27■□□□□ 0.04
VPS33B-206ENST00000557358 ZNF558Q96NG5 402 aa15.27■□□□□ 0.04
VPS33B-206ENST00000557358 ADPGKQ9BRR6 497 aa15.27■□□□□ 0.04
VPS33B-206ENST00000557358 NSUN3Q9H649 340 aaKnown RBP15.27■□□□□ 0.04
VPS33B-206ENST00000557358 C17orf75Q9HAS0 396 aa15.27■□□□□ 0.04
VPS33B-206ENST00000557358 GPRC5CQ9NQ84 441 aa15.27■□□□□ 0.04
VPS33B-206ENST00000557358 KCND2Q9NZV8 630 aa15.27■□□□□ 0.04
VPS33B-206ENST00000557358 CCDC39Q9UFE4 941 aa15.27■□□□□ 0.04
VPS33B-206ENST00000557358 COL4A4P53420 1690 aaPredicted RBP15.27■□□□□ 0.03
VPS33B-206ENST00000557358 CCDC169A6NNP5 214 aa15.26■□□□□ 0.03
VPS33B-206ENST00000557358 E9PMD0 336 aa15.26■□□□□ 0.03
VPS33B-206ENST00000557358 ITGA4P13612 1032 aa15.26■□□□□ 0.03
VPS33B-206ENST00000557358 LIG1P18858 919 aa15.26■□□□□ 0.03
VPS33B-206ENST00000557358 ALDH7A1P49419 539 aaKnown RBP15.26■□□□□ 0.03
VPS33B-206ENST00000557358 MRPS5P82675 430 aaKnown RBP15.26■□□□□ 0.03
VPS33B-206ENST00000557358 MBTD1Q05BQ5 628 aa15.26■□□□□ 0.03
VPS33B-206ENST00000557358 IL17AQ16552 155 aa15.26■□□□□ 0.03
VPS33B-206ENST00000557358 HYIQ5T013 277 aa15.26■□□□□ 0.03
VPS33B-206ENST00000557358 ZNF598Q86UK7 904 aaKnown RBP15.26■□□□□ 0.03
VPS33B-206ENST00000557358 KLHL23Q8NBE8 558 aa15.26■□□□□ 0.03
VPS33B-206ENST00000557358 MICAL1Q8TDZ2 1067 aa15.26■□□□□ 0.03
VPS33B-206ENST00000557358 HLA-CQ95604 372 aa15.26■□□□□ 0.03
VPS33B-206ENST00000557358 CASD1Q96PB1 797 aa15.26■□□□□ 0.03
VPS33B-206ENST00000557358 CSRNP2Q9H175 543 aa15.26■□□□□ 0.03
VPS33B-206ENST00000557358 MINDY3Q9H8M7 445 aa15.26■□□□□ 0.03
VPS33B-206ENST00000557358 PLAGL2Q9UPG8 496 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms