RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 ESYT1Q9BSJ8 1104 aa11.4□□□□□ -0.58
SCFD1-220ENST00000556486 FTHL17Q9BXU8 183 aa11.4□□□□□ -0.58
SCFD1-220ENST00000556486 NR2E1Q9Y466 385 aa11.4□□□□□ -0.58
SCFD1-220ENST00000556486 SLC12A7Q9Y666 1083 aa11.4□□□□□ -0.58
SCFD1-220ENST00000556486 NFASCO94856 1347 aa11.39□□□□□ -0.59
SCFD1-220ENST00000556486 IGSF9BQ9UPX0 1349 aa11.39□□□□□ -0.59
SCFD1-220ENST00000556486 DENND3A2RUS2 1198 aa11.39□□□□□ -0.59
SCFD1-220ENST00000556486 RRN3P2A6NIE6 340 aa11.39□□□□□ -0.59
SCFD1-220ENST00000556486 SRGAP2BP0DMP2 458 aa11.39□□□□□ -0.59
SCFD1-220ENST00000556486 SARSP49591 514 aaKnown RBP11.39□□□□□ -0.59
SCFD1-220ENST00000556486 RCAN1P53805 252 aa11.39□□□□□ -0.59
SCFD1-220ENST00000556486 PLCB4Q15147 1175 aa11.39□□□□□ -0.59
SCFD1-220ENST00000556486 RARS2Q5T160 578 aaKnown RBP11.39□□□□□ -0.59
SCFD1-220ENST00000556486 CWF19L1Q69YN2 538 aaKnown RBP11.39□□□□□ -0.59
SCFD1-220ENST00000556486 APOA5Q6Q788 366 aa11.39□□□□□ -0.59
SCFD1-220ENST00000556486 NFXL1Q6ZNB6 911 aa11.39□□□□□ -0.59
SCFD1-220ENST00000556486 PLPPR4Q7Z2D5 763 aa11.39□□□□□ -0.59
SCFD1-220ENST00000556486 UBALD2Q8IYN6 164 aa11.39□□□□□ -0.59
SCFD1-220ENST00000556486 CMTR1Q8N1G2 835 aaKnown RBP11.39□□□□□ -0.59
SCFD1-220ENST00000556486 TNPO1Q92973 898 aaKnown RBP11.39□□□□□ -0.59
SCFD1-220ENST00000556486 PCYT2Q99447 389 aa11.39□□□□□ -0.59
SCFD1-220ENST00000556486 CDCA3Q99618 268 aaPredicted RBP11.39□□□□□ -0.59
SCFD1-220ENST00000556486 CELF4Q9BZC1 486 aaKnown RBP11.39□□□□□ -0.59
SCFD1-220ENST00000556486 CWH43Q9H720 699 aa11.39□□□□□ -0.59
SCFD1-220ENST00000556486 JPH1Q9HDC5 661 aaPredicted RBP11.39□□□□□ -0.59
SCFD1-220ENST00000556486 AAASQ9NRG9 546 aa11.39□□□□□ -0.59
SCFD1-220ENST00000556486 KCNH7Q9NS40 1196 aa11.39□□□□□ -0.59
SCFD1-220ENST00000556486 PCDHA6Q9UN73 950 aa11.39□□□□□ -0.59
SCFD1-220ENST00000556486 NOC2LQ9Y3T9 749 aaKnown RBP11.39□□□□□ -0.59
SCFD1-220ENST00000556486 PCDHB3Q9Y5E6 796 aa11.39□□□□□ -0.59
SCFD1-220ENST00000556486 PCDHA8Q9Y5H6 950 aa11.39□□□□□ -0.59
SCFD1-220ENST00000556486 KDM3AQ9Y4C1 1321 aa11.38□□□□□ -0.59
SCFD1-220ENST00000556486 hCG_1984214I3L0E3 225 aa11.38□□□□□ -0.59
SCFD1-220ENST00000556486 FOSP01100 380 aaPredicted RBP11.38□□□□□ -0.59
SCFD1-220ENST00000556486 RXRAP19793 462 aa11.38□□□□□ -0.59
SCFD1-220ENST00000556486 SLC26A2P50443 739 aa11.38□□□□□ -0.59
SCFD1-220ENST00000556486 KRT76Q01546 638 aa11.38□□□□□ -0.59
SCFD1-220ENST00000556486 UBE3AQ05086 875 aa11.38□□□□□ -0.59
SCFD1-220ENST00000556486 ANGPT1Q15389 498 aa11.38□□□□□ -0.59
SCFD1-220ENST00000556486 UBE2SQ16763 222 aa11.38□□□□□ -0.59
SCFD1-220ENST00000556486 MSS51Q4VC12 460 aa11.38□□□□□ -0.59
SCFD1-220ENST00000556486 BMP2KLQ5H9B9 411 aa11.38□□□□□ -0.59
SCFD1-220ENST00000556486 TMC7Q7Z402 723 aa11.38□□□□□ -0.59
SCFD1-220ENST00000556486 ZNF713Q8N859 430 aaPredicted RBP11.38□□□□□ -0.59
SCFD1-220ENST00000556486 GIPC2Q8TF65 315 aa11.38□□□□□ -0.59
SCFD1-220ENST00000556486 TMEM40Q8WWA1 233 aa11.38□□□□□ -0.59
SCFD1-220ENST00000556486 AUTS2Q8WXX7 1259 aa11.38□□□□□ -0.59
SCFD1-220ENST00000556486 MXRA8Q9BRK3 442 aa11.38□□□□□ -0.59
SCFD1-220ENST00000556486 ARHGAP9Q9BRR9 750 aa11.38□□□□□ -0.59
SCFD1-220ENST00000556486 RIC8AQ9NPQ8 531 aa11.38□□□□□ -0.59
SCFD1-220ENST00000556486 RBM28Q9NW13 759 aaKnown RBP11.38□□□□□ -0.59
SCFD1-220ENST00000556486 R4GN57 208 aa11.38□□□□□ -0.59
SCFD1-220ENST00000556486 EVPLQ92817 2033 aa11.38□□□□□ -0.59
SCFD1-220ENST00000556486 CNTNAP5Q8WYK1 1306 aa11.37□□□□□ -0.59
SCFD1-220ENST00000556486 IGKV6D-21A0A0A0MT36 114 aa11.37□□□□□ -0.59
SCFD1-220ENST00000556486 ANKRD33BA6NCL7 494 aa11.37□□□□□ -0.59
SCFD1-220ENST00000556486 MEIS1O00470 390 aa11.37□□□□□ -0.59
SCFD1-220ENST00000556486 DXOO77932 396 aaKnown RBP11.37□□□□□ -0.59
SCFD1-220ENST00000556486 DKK1O94907 266 aa11.37□□□□□ -0.59
SCFD1-220ENST00000556486 EXOSC10Q01780 885 aaKnown RBP11.37□□□□□ -0.59
SCFD1-220ENST00000556486 CEP55Q53EZ4 464 aa11.37□□□□□ -0.59
SCFD1-220ENST00000556486 RNF20Q5VTR2 975 aa11.37□□□□□ -0.59
SCFD1-220ENST00000556486 WWC2Q6AWC2 1192 aa11.37□□□□□ -0.59
SCFD1-220ENST00000556486 MCTP2Q6DN12 878 aa11.37□□□□□ -0.59
SCFD1-220ENST00000556486 CES5AQ6NT32 575 aa11.37□□□□□ -0.59
SCFD1-220ENST00000556486 TMEM184AQ6ZMB5 413 aa11.37□□□□□ -0.59
SCFD1-220ENST00000556486 LRRC55Q6ZSA7 311 aa11.37□□□□□ -0.59
SCFD1-220ENST00000556486 NIPA1Q7RTP0 329 aa11.37□□□□□ -0.59
SCFD1-220ENST00000556486 DGLUCYQ7Z3D6 616 aa11.37□□□□□ -0.59
SCFD1-220ENST00000556486 HEATR3Q7Z4Q2 680 aa11.37□□□□□ -0.59
SCFD1-220ENST00000556486 MICU3Q86XE3 530 aa11.37□□□□□ -0.59
SCFD1-220ENST00000556486 SIX5Q8N196 739 aa11.37□□□□□ -0.59
SCFD1-220ENST00000556486 TDRD5Q8NAT2 981 aaKnown RBP11.37□□□□□ -0.59
SCFD1-220ENST00000556486 RNF169Q8NCN4 708 aa11.37□□□□□ -0.59
SCFD1-220ENST00000556486 CRYGNQ8WXF5 182 aa11.37□□□□□ -0.59
SCFD1-220ENST00000556486 RIN2Q8WYP3 895 aaPredicted RBP11.37□□□□□ -0.59
SCFD1-220ENST00000556486 MRPS27Q92552 414 aaKnown RBP11.37□□□□□ -0.59
SCFD1-220ENST00000556486 GLT8D2Q9H1C3 349 aa11.37□□□□□ -0.59
SCFD1-220ENST00000556486 ERVK-5Q9HDB9 667 aa11.37□□□□□ -0.59
SCFD1-220ENST00000556486 SLC9A2Q9UBY0 812 aa11.37□□□□□ -0.59
SCFD1-220ENST00000556486 PCDHA2Q9Y5H9 948 aa11.37□□□□□ -0.59
SCFD1-220ENST00000556486 HCFC2Q9Y5Z7 792 aa11.37□□□□□ -0.59
SCFD1-220ENST00000556486 SMIM35A0A1B0GVV1 85 aa11.36□□□□□ -0.59
SCFD1-220ENST00000556486 hCG_1642624A0A1W2PR95 340 aa11.36□□□□□ -0.59
SCFD1-220ENST00000556486 NT5C1B-RDH14C9J2C7 533 aa11.36□□□□□ -0.59
SCFD1-220ENST00000556486 PRMT3O60678 531 aa11.36□□□□□ -0.59
SCFD1-220ENST00000556486 RPS6KA5O75582 802 aa11.36□□□□□ -0.59
SCFD1-220ENST00000556486 LAG3P18627 525 aa11.36□□□□□ -0.59
SCFD1-220ENST00000556486 SREBF1P36956 1147 aa11.36□□□□□ -0.59
SCFD1-220ENST00000556486 ACTR2P61160 394 aa11.36□□□□□ -0.59
SCFD1-220ENST00000556486 KCNC4Q03721 635 aa11.36□□□□□ -0.59
SCFD1-220ENST00000556486 AP3B2Q13367 1082 aa11.36□□□□□ -0.59
SCFD1-220ENST00000556486 MTHFD1LQ6UB35 978 aa11.36□□□□□ -0.59
SCFD1-220ENST00000556486 TRMT1LQ7Z2T5 733 aaKnown RBP11.36□□□□□ -0.59
SCFD1-220ENST00000556486 NME8Q8N427 588 aa11.36□□□□□ -0.59
SCFD1-220ENST00000556486 CASP10Q92851 521 aa11.36□□□□□ -0.59
SCFD1-220ENST00000556486 CNTNAP3BQ96NU0 1288 aa11.36□□□□□ -0.59
SCFD1-220ENST00000556486 HINFPQ9BQA5 517 aa11.36□□□□□ -0.59
SCFD1-220ENST00000556486 CNTNAP3Q9BZ76 1288 aa11.36□□□□□ -0.59
SCFD1-220ENST00000556486 ADAM7Q9H2U9 754 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms