RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 SYT1P21579 422 aa22.89■■□□□ 1.25
CCDC88C-210ENST00000555995 SKIV2LQ15477 1246 aaKnown RBP22.89■■□□□ 1.25
CCDC88C-210ENST00000555995 ZBTB8OSQ8IWT0 167 aa22.89■■□□□ 1.25
CCDC88C-210ENST00000555995 CNNM3Q8NE01 707 aa22.89■■□□□ 1.25
CCDC88C-210ENST00000555995 C2orf40Q9H1Z8 148 aa22.89■■□□□ 1.25
CCDC88C-210ENST00000555995 BHMT2Q9H2M3 363 aa22.89■■□□□ 1.25
CCDC88C-210ENST00000555995 COG5Q9UP83 839 aa22.89■■□□□ 1.25
CCDC88C-210ENST00000555995 VWA3AA6NCI4 1184 aa22.88■■□□□ 1.25
CCDC88C-210ENST00000555995 INO80B-WBP1J3KQ70 363 aa22.88■■□□□ 1.25
CCDC88C-210ENST00000555995 EYA4O95677 639 aa22.88■■□□□ 1.25
CCDC88C-210ENST00000555995 FGFR1P11362 822 aa22.88■■□□□ 1.25
CCDC88C-210ENST00000555995 GLRA2P23416 452 aa22.88■■□□□ 1.25
CCDC88C-210ENST00000555995 FAM102BQ5T8I3 360 aa22.88■■□□□ 1.25
CCDC88C-210ENST00000555995 NOTUMQ6P988 496 aa22.88■■□□□ 1.25
CCDC88C-210ENST00000555995 ZNF598Q86UK7 904 aaKnown RBP22.88■■□□□ 1.25
CCDC88C-210ENST00000555995 RNF169Q8NCN4 708 aa22.88■■□□□ 1.25
CCDC88C-210ENST00000555995 ASAP3Q8TDY4 903 aa22.88■■□□□ 1.25
CCDC88C-210ENST00000555995 ATXN2LQ8WWM7 1075 aaKnown RBP22.88■■□□□ 1.25
CCDC88C-210ENST00000555995 KIFAP3Q92845 792 aa22.88■■□□□ 1.25
CCDC88C-210ENST00000555995 CDK5RAP3Q96JB5 506 aa22.88■■□□□ 1.25
CCDC88C-210ENST00000555995 ZSCAN16Q9H4T2 348 aaPredicted RBP22.88■■□□□ 1.25
CCDC88C-210ENST00000555995 FAM105AQ9NUU6 356 aa22.88■■□□□ 1.25
CCDC88C-210ENST00000555995 LRRIQ4A6NIV6 560 aa22.87■■□□□ 1.25
CCDC88C-210ENST00000555995 ZNF623O75123 536 aa22.87■■□□□ 1.25
CCDC88C-210ENST00000555995 AAK1Q2M2I8 961 aa22.87■■□□□ 1.25
CCDC88C-210ENST00000555995 HYIQ5T013 277 aa22.87■■□□□ 1.25
CCDC88C-210ENST00000555995 IFT74Q96LB3 600 aa22.87■■□□□ 1.25
CCDC88C-210ENST00000555995 PRIMPOLQ96LW4 560 aa22.87■■□□□ 1.25
CCDC88C-210ENST00000555995 MINDY3Q9H8M7 445 aa22.87■■□□□ 1.25
CCDC88C-210ENST00000555995 PRMT7Q9NVM4 692 aaPredicted RBP22.87■■□□□ 1.25
CCDC88C-210ENST00000555995 CNTNAP2Q9UHC6 1331 aa22.86■■□□□ 1.25
CCDC88C-210ENST00000555995 PPM1AP35813 382 aa22.86■■□□□ 1.25
CCDC88C-210ENST00000555995 NAMPTP43490 491 aa22.86■■□□□ 1.25
CCDC88C-210ENST00000555995 GATMP50440 423 aa22.86■■□□□ 1.25
CCDC88C-210ENST00000555995 UBE3AQ05086 875 aa22.86■■□□□ 1.25
CCDC88C-210ENST00000555995 GLB1LQ6UWU2 654 aa22.86■■□□□ 1.25
CCDC88C-210ENST00000555995 HACE1Q8IYU2 909 aa22.86■■□□□ 1.25
CCDC88C-210ENST00000555995 PPP2R3CQ969Q6 453 aa22.86■■□□□ 1.25
CCDC88C-210ENST00000555995 TIPINQ9BVW5 301 aa22.86■■□□□ 1.25
CCDC88C-210ENST00000555995 PHLPP2Q6ZVD8 1323 aa22.85■■□□□ 1.25
CCDC88C-210ENST00000555995 A0A087WWV3 80 aa22.85■■□□□ 1.25
CCDC88C-210ENST00000555995 STX6O43752 255 aa22.85■■□□□ 1.25
CCDC88C-210ENST00000555995 ATF7P17544 494 aaPredicted RBP22.85■■□□□ 1.25
CCDC88C-210ENST00000555995 LONP1P36776 959 aaKnown RBP22.85■■□□□ 1.25
CCDC88C-210ENST00000555995 MBTD1Q05BQ5 628 aa22.85■■□□□ 1.25
CCDC88C-210ENST00000555995 SF3A1Q15459 793 aaKnown RBP22.85■■□□□ 1.25
CCDC88C-210ENST00000555995 IL17AQ16552 155 aa22.85■■□□□ 1.25
CCDC88C-210ENST00000555995 ECM1Q16610 540 aa22.85■■□□□ 1.25
CCDC88C-210ENST00000555995 CDCA2Q69YH5 1023 aaPredicted RBP22.85■■□□□ 1.25
CCDC88C-210ENST00000555995 MAEAQ7L5Y9 396 aa22.85■■□□□ 1.25
CCDC88C-210ENST00000555995 CASD1Q96PB1 797 aa22.85■■□□□ 1.25
CCDC88C-210ENST00000555995 NSUN3Q9H649 340 aaKnown RBP22.85■■□□□ 1.25
CCDC88C-210ENST00000555995 UBN1Q9NPG3 1134 aa22.85■■□□□ 1.25
CCDC88C-210ENST00000555995 TYW1Q9NV66 732 aaKnown RBP22.85■■□□□ 1.25
CCDC88C-210ENST00000555995 PP2D1A8MPX8 630 aa22.84■■□□□ 1.25
CCDC88C-210ENST00000555995 TSPAN1O60635 241 aa22.84■■□□□ 1.25
CCDC88C-210ENST00000555995 CLLU1OSQ5K130 101 aa22.84■■□□□ 1.25
CCDC88C-210ENST00000555995 PPP4R3CPQ6ZMV5 832 aa22.84■■□□□ 1.25
CCDC88C-210ENST00000555995 COLGALT1Q8NBJ5 622 aa22.84■■□□□ 1.25
CCDC88C-210ENST00000555995 DEPTORQ8TB45 409 aa22.84■■□□□ 1.25
CCDC88C-210ENST00000555995 HELQQ8TDG4 1101 aa22.84■■□□□ 1.25
CCDC88C-210ENST00000555995 CALML4Q96GE6 196 aa22.84■■□□□ 1.25
CCDC88C-210ENST00000555995 DRC1Q96MC2 740 aa22.84■■□□□ 1.25
CCDC88C-210ENST00000555995 GPRC5CQ9NQ84 441 aa22.84■■□□□ 1.25
CCDC88C-210ENST00000555995 RNF19AQ9NV58 838 aa22.84■■□□□ 1.25
CCDC88C-210ENST00000555995 KCND2Q9NZV8 630 aa22.84■■□□□ 1.25
CCDC88C-210ENST00000555995 KCNG1Q9UIX4 513 aa22.84■■□□□ 1.25
CCDC88C-210ENST00000555995 PLAGL2Q9UPG8 496 aa22.84■■□□□ 1.25
CCDC88C-210ENST00000555995 PCDHB2Q9Y5E7 798 aa22.84■■□□□ 1.25
CCDC88C-210ENST00000555995 MYH15Q9Y2K3 1946 aa22.84■■□□□ 1.25
CCDC88C-210ENST00000555995 NCK2O43639 380 aa22.83■■□□□ 1.25
CCDC88C-210ENST00000555995 HOXA11P31270 313 aaPredicted RBP22.83■■□□□ 1.25
CCDC88C-210ENST00000555995 UBA7P41226 1012 aa22.83■■□□□ 1.25
CCDC88C-210ENST00000555995 EFNA5P52803 228 aa22.83■■□□□ 1.25
CCDC88C-210ENST00000555995 MRPS5P82675 430 aaKnown RBP22.83■■□□□ 1.25
CCDC88C-210ENST00000555995 RESTQ13127 1097 aa22.83■■□□□ 1.25
CCDC88C-210ENST00000555995 FAM187BQ17R55 369 aa22.83■■□□□ 1.25
CCDC88C-210ENST00000555995 CABP7Q86V35 215 aa22.83■■□□□ 1.25
CCDC88C-210ENST00000555995 THNSL1Q8IYQ7 743 aa22.83■■□□□ 1.25
CCDC88C-210ENST00000555995 KLHL23Q8NBE8 558 aa22.83■■□□□ 1.25
CCDC88C-210ENST00000555995 URGCPQ8TCY9 931 aa22.83■■□□□ 1.25
CCDC88C-210ENST00000555995 SYMPKQ92797 1274 aaKnown RBP22.83■■□□□ 1.25
CCDC88C-210ENST00000555995 ZNF558Q96NG5 402 aa22.83■■□□□ 1.25
CCDC88C-210ENST00000555995 MMTAG2Q9BU76 263 aaKnown RBP22.83■■□□□ 1.25
CCDC88C-210ENST00000555995 TRIM6Q9C030 488 aaPredicted RBP22.83■■□□□ 1.25
CCDC88C-210ENST00000555995 CSRNP2Q9H175 543 aa22.83■■□□□ 1.25
CCDC88C-210ENST00000555995 C17orf75Q9HAS0 396 aa22.83■■□□□ 1.25
CCDC88C-210ENST00000555995 MTMR6Q9Y217 621 aa22.83■■□□□ 1.25
CCDC88C-210ENST00000555995 ATG2AQ2TAZ0 1938 aa22.82■■□□□ 1.24
CCDC88C-210ENST00000555995 PLXNA4Q9HCM2 1894 aa22.82■■□□□ 1.24
CCDC88C-210ENST00000555995 E9PMD0 336 aa22.82■■□□□ 1.24
CCDC88C-210ENST00000555995 GRM6O15303 877 aa22.82■■□□□ 1.24
CCDC88C-210ENST00000555995 NCLP19338 710 aaKnown RBP22.82■■□□□ 1.24
CCDC88C-210ENST00000555995 CDC25AP30304 524 aa22.82■■□□□ 1.24
CCDC88C-210ENST00000555995 ZRSR1Q15695 479 aaKnown RBP22.82■■□□□ 1.24
CCDC88C-210ENST00000555995 MAPK6Q16659 721 aa22.82■■□□□ 1.24
CCDC88C-210ENST00000555995 MRPL10Q7Z7H8 261 aaKnown RBP22.82■■□□□ 1.24
CCDC88C-210ENST00000555995 HLA-CQ95604 372 aa22.82■■□□□ 1.24
CCDC88C-210ENST00000555995 CWH43Q9H720 699 aa22.82■■□□□ 1.24
CCDC88C-210ENST00000555995 FOXD4L1Q9NU39 408 aa22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms