RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 RABL3Q5HYI8 236 aa6.05□□□□□ -1.44
SCFD1-217ENST00000555953 KIAA1841Q6NSI8 718 aa6.05□□□□□ -1.44
SCFD1-217ENST00000555953 TIGD7Q6NT04 549 aaPredicted RBP6.05□□□□□ -1.44
SCFD1-217ENST00000555953 UBE2R2Q712K3 238 aaPredicted RBP6.05□□□□□ -1.44
SCFD1-217ENST00000555953 MRGPREQ86SM8 312 aa6.05□□□□□ -1.44
SCFD1-217ENST00000555953 ZNF575Q86XF7 245 aa6.05□□□□□ -1.44
SCFD1-217ENST00000555953 CMTM4Q8IZR5 234 aa6.05□□□□□ -1.44
SCFD1-217ENST00000555953 SH3TC2Q8TF17 1288 aa6.05□□□□□ -1.44
SCFD1-217ENST00000555953 ZMAT4Q9H898 229 aa6.05□□□□□ -1.44
SCFD1-217ENST00000555953 TOMM22Q9NS69 142 aa6.05□□□□□ -1.44
SCFD1-217ENST00000555953 SYNPO2Q9UMS6 1093 aa6.05□□□□□ -1.44
SCFD1-217ENST00000555953 GOLGA6L6A8MZA4 724 aa6.04□□□□□ -1.44
SCFD1-217ENST00000555953 MTSS1O43312 755 aa6.04□□□□□ -1.44
SCFD1-217ENST00000555953 MFAP3LO75121 409 aa6.04□□□□□ -1.44
SCFD1-217ENST00000555953 IPO13O94829 963 aaKnown RBP6.04□□□□□ -1.44
SCFD1-217ENST00000555953 ATP2A2P16615 1042 aaKnown RBP6.04□□□□□ -1.44
SCFD1-217ENST00000555953 NPEPPSP55786 919 aa6.04□□□□□ -1.44
SCFD1-217ENST00000555953 NFE2L2Q16236 605 aa6.04□□□□□ -1.44
SCFD1-217ENST00000555953 ZNF276Q8N554 614 aa6.04□□□□□ -1.44
SCFD1-217ENST00000555953 SLC25A43Q8WUT9 341 aaPredicted RBP6.04□□□□□ -1.44
SCFD1-217ENST00000555953 ZG16BQ96DA0 208 aa6.04□□□□□ -1.44
SCFD1-217ENST00000555953 OSBPL6Q9BZF3 934 aa6.04□□□□□ -1.44
SCFD1-217ENST00000555953 RFPL3O75679 317 aa6.03□□□□□ -1.44
SCFD1-217ENST00000555953 ASMTLO95671 621 aa6.03□□□□□ -1.44
SCFD1-217ENST00000555953 GAAP10253 952 aa6.03□□□□□ -1.44
SCFD1-217ENST00000555953 NR4A1P22736 598 aa6.03□□□□□ -1.44
SCFD1-217ENST00000555953 PTGS2P35354 604 aa6.03□□□□□ -1.44
SCFD1-217ENST00000555953 PABPC4Q13310 644 aaKnown RBP eCLIP6.03□□□□□ -1.44
SCFD1-217ENST00000555953 FAM214AQ32MH5 1076 aa6.03□□□□□ -1.44
SCFD1-217ENST00000555953 LAIR1Q6GTX8 287 aa6.03□□□□□ -1.44
SCFD1-217ENST00000555953 RHOUQ7L0Q8 258 aa6.03□□□□□ -1.44
SCFD1-217ENST00000555953 DNAJC10Q8IXB1 793 aa6.03□□□□□ -1.44
SCFD1-217ENST00000555953 ST8SIA2Q92186 375 aa6.03□□□□□ -1.44
SCFD1-217ENST00000555953 HAS1Q92839 578 aa6.03□□□□□ -1.44
SCFD1-217ENST00000555953 UIMC1Q96RL1 719 aa6.03□□□□□ -1.44
SCFD1-217ENST00000555953 NOL10Q9BSC4 688 aaKnown RBP6.03□□□□□ -1.44
SCFD1-217ENST00000555953 ING3Q9NXR8 418 aa6.03□□□□□ -1.44
SCFD1-217ENST00000555953 FSTL1Q12841 308 aa6.02□□□□□ -1.45
SCFD1-217ENST00000555953 MAN2A1Q16706 1144 aa6.02□□□□□ -1.45
SCFD1-217ENST00000555953 NAIF1Q69YI7 327 aaPredicted RBP6.02□□□□□ -1.45
SCFD1-217ENST00000555953 PIK3C3Q8NEB9 887 aa6.02□□□□□ -1.45
SCFD1-217ENST00000555953 LENG9Q96B70 501 aa6.02□□□□□ -1.45
SCFD1-217ENST00000555953 MRFAP1L1Q96HT8 127 aa6.02□□□□□ -1.45
SCFD1-217ENST00000555953 ORAI3Q9BRQ5 295 aa6.02□□□□□ -1.45
SCFD1-217ENST00000555953 MLST8Q9BVC4 326 aa6.02□□□□□ -1.45
SCFD1-217ENST00000555953 KRTAP9-8Q9BYQ0 159 aa6.02□□□□□ -1.45
SCFD1-217ENST00000555953 TMEM260Q9NX78 707 aa6.02□□□□□ -1.45
SCFD1-217ENST00000555953 MAGEC2Q9UBF1 373 aaPredicted RBP6.02□□□□□ -1.45
SCFD1-217ENST00000555953 TMEM191CA6NGB0 347 aa6.01□□□□□ -1.45
SCFD1-217ENST00000555953 ELL2O00472 640 aaPredicted RBP6.01□□□□□ -1.45
SCFD1-217ENST00000555953 MAFGO15525 162 aa6.01□□□□□ -1.45
SCFD1-217ENST00000555953 FSBPO95073 299 aa6.01□□□□□ -1.45
SCFD1-217ENST00000555953 PCDH8O95206 1070 aa6.01□□□□□ -1.45
SCFD1-217ENST00000555953 CFBP00751 764 aa6.01□□□□□ -1.45
SCFD1-217ENST00000555953 GNAT2P19087 354 aa6.01□□□□□ -1.45
SCFD1-217ENST00000555953 HK1P19367 917 aa6.01□□□□□ -1.45
SCFD1-217ENST00000555953 DCAF17Q5H9S7 520 aaPredicted RBP6.01□□□□□ -1.45
SCFD1-217ENST00000555953 APBB1IPQ7Z5R6 666 aaPredicted RBP6.01□□□□□ -1.45
SCFD1-217ENST00000555953 VRK3Q8IV63 474 aa6.01□□□□□ -1.45
SCFD1-217ENST00000555953 ZZZ3Q8IYH5 903 aa6.01□□□□□ -1.45
SCFD1-217ENST00000555953 PPP1R14CQ8TAE6 165 aa6.01□□□□□ -1.45
SCFD1-217ENST00000555953 HIST1H2AHQ96KK5 128 aa6.01□□□□□ -1.45
SCFD1-217ENST00000555953 HIST1H2AJQ99878 128 aa6.01□□□□□ -1.45
SCFD1-217ENST00000555953 ENKD1Q9H0I2 346 aa6.01□□□□□ -1.45
SCFD1-217ENST00000555953 FAM83GA6ND36 823 aa6□□□□□ -1.45
SCFD1-217ENST00000555953 ZNF891A8MT65 544 aaPredicted RBP6□□□□□ -1.45
SCFD1-217ENST00000555953 KPNA6O60684 536 aa6□□□□□ -1.45
SCFD1-217ENST00000555953 ALDH1A2O94788 518 aa6□□□□□ -1.45
SCFD1-217ENST00000555953 KRTAP1-1Q07627 177 aa6□□□□□ -1.45
SCFD1-217ENST00000555953 MBNL2Q5VZF2 373 aaKnown RBP6□□□□□ -1.45
SCFD1-217ENST00000555953 CXorf67Q86X51 503 aaPredicted RBP6□□□□□ -1.45
SCFD1-217ENST00000555953 UNC5BQ8IZJ1 945 aa6□□□□□ -1.45
SCFD1-217ENST00000555953 NXPE1Q8N323 547 aa6□□□□□ -1.45
SCFD1-217ENST00000555953 SREK1Q8WXA9 508 aaKnown RBP6□□□□□ -1.45
SCFD1-217ENST00000555953 INTS7Q9NVH2 962 aaKnown RBP6□□□□□ -1.45
SCFD1-217ENST00000555953 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6□□□□□ -1.45
SCFD1-217ENST00000555953 ZKSCAN5Q9Y2L8 839 aa6□□□□□ -1.45
SCFD1-217ENST00000555953 MYPNQ86TC9 1320 aa5.99□□□□□ -1.45
SCFD1-217ENST00000555953 HOXA3O43365 443 aaPredicted RBP5.99□□□□□ -1.45
SCFD1-217ENST00000555953 F2P00734 622 aa5.99□□□□□ -1.45
SCFD1-217ENST00000555953 PROZP22891 400 aa5.99□□□□□ -1.45
SCFD1-217ENST00000555953 CD40P25942 277 aa5.99□□□□□ -1.45
SCFD1-217ENST00000555953 ZFP36P26651 326 aaKnown RBP5.99□□□□□ -1.45
SCFD1-217ENST00000555953 PTTG1IPP53801 180 aa5.99□□□□□ -1.45
SCFD1-217ENST00000555953 DSG1Q02413 1049 aa5.99□□□□□ -1.45
SCFD1-217ENST00000555953 CD69Q07108 199 aa5.99□□□□□ -1.45
SCFD1-217ENST00000555953 LRRC32Q14392 662 aa5.99□□□□□ -1.45
SCFD1-217ENST00000555953 SYNE4Q8N205 404 aa5.99□□□□□ -1.45
SCFD1-217ENST00000555953 EFHBQ8N7U6 833 aa5.99□□□□□ -1.45
SCFD1-217ENST00000555953 CHTF18Q8WVB6 975 aa5.99□□□□□ -1.45
SCFD1-217ENST00000555953 CRAMP1Q96RY5 1269 aa5.99□□□□□ -1.45
SCFD1-217ENST00000555953 ZSWIM4Q9H7M6 989 aa5.99□□□□□ -1.45
SCFD1-217ENST00000555953 FZD1Q9UP38 647 aa5.99□□□□□ -1.45
SCFD1-217ENST00000555953 SORCS3Q9UPU3 1222 aa5.99□□□□□ -1.45
SCFD1-217ENST00000555953 PCDHB6Q9Y5E3 794 aa5.99□□□□□ -1.45
SCFD1-217ENST00000555953 NRP1O14786 923 aa5.98□□□□□ -1.45
SCFD1-217ENST00000555953 TGM5O43548 720 aa5.98□□□□□ -1.45
SCFD1-217ENST00000555953 GAS7O60861 476 aa5.98□□□□□ -1.45
SCFD1-217ENST00000555953 PPFIA2O75334 1257 aa5.98□□□□□ -1.45
SCFD1-217ENST00000555953 LY86O95711 162 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms