RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 STX6O43752 255 aa17■□□□□ 0.31
SHMT2-204ENST00000553324 FGFR1P11362 822 aa17■□□□□ 0.31
SHMT2-204ENST00000553324 CAPSQ13938 189 aa17■□□□□ 0.31
SHMT2-204ENST00000553324 PPP2R5AQ15172 486 aa17■□□□□ 0.31
SHMT2-204ENST00000553324 SF3A1Q15459 793 aaKnown RBP17■□□□□ 0.31
SHMT2-204ENST00000553324 SKIV2LQ15477 1246 aaKnown RBP17■□□□□ 0.31
SHMT2-204ENST00000553324 HYIQ5T013 277 aa17■□□□□ 0.31
SHMT2-204ENST00000553324 NOTUMQ6P988 496 aa17■□□□□ 0.31
SHMT2-204ENST00000553324 ZNF598Q86UK7 904 aaKnown RBP17■□□□□ 0.31
SHMT2-204ENST00000553324 ZBTB8OSQ8IWT0 167 aa17■□□□□ 0.31
SHMT2-204ENST00000553324 RNF169Q8NCN4 708 aa17■□□□□ 0.31
SHMT2-204ENST00000553324 CNNM3Q8NE01 707 aa17■□□□□ 0.31
SHMT2-204ENST00000553324 ASAP3Q8TDY4 903 aa17■□□□□ 0.31
SHMT2-204ENST00000553324 ATXN2LQ8WWM7 1075 aaKnown RBP17■□□□□ 0.31
SHMT2-204ENST00000553324 KIFAP3Q92845 792 aa17■□□□□ 0.31
SHMT2-204ENST00000553324 CDK5RAP3Q96JB5 506 aa17■□□□□ 0.31
SHMT2-204ENST00000553324 IFT74Q96LB3 600 aa17■□□□□ 0.31
SHMT2-204ENST00000553324 C2orf40Q9H1Z8 148 aa17■□□□□ 0.31
SHMT2-204ENST00000553324 MINDY3Q9H8M7 445 aa17■□□□□ 0.31
SHMT2-204ENST00000553324 FAM105AQ9NUU6 356 aa17■□□□□ 0.31
SHMT2-204ENST00000553324 KCNG1Q9UIX4 513 aa17■□□□□ 0.31
SHMT2-204ENST00000553324 CDC25AP30304 524 aa16.99■□□□□ 0.31
SHMT2-204ENST00000553324 HOXA11P31270 313 aaPredicted RBP16.99■□□□□ 0.31
SHMT2-204ENST00000553324 LONP1P36776 959 aaKnown RBP16.99■□□□□ 0.31
SHMT2-204ENST00000553324 UBA7P41226 1012 aa16.99■□□□□ 0.31
SHMT2-204ENST00000553324 TIGD5Q53EQ6 642 aa16.99■□□□□ 0.31
SHMT2-204ENST00000553324 CASD1Q96PB1 797 aa16.99■□□□□ 0.31
SHMT2-204ENST00000553324 TIPINQ9BVW5 301 aa16.99■□□□□ 0.31
SHMT2-204ENST00000553324 MRPL9Q9BYD2 267 aaKnown RBP16.99■□□□□ 0.31
SHMT2-204ENST00000553324 UBN1Q9NPG3 1134 aa16.99■□□□□ 0.31
SHMT2-204ENST00000553324 FOXD4L1Q9NU39 408 aa16.99■□□□□ 0.31
SHMT2-204ENST00000553324 TYW1Q9NV66 732 aaKnown RBP16.99■□□□□ 0.31
SHMT2-204ENST00000553324 COG5Q9UP83 839 aa16.99■□□□□ 0.31
SHMT2-204ENST00000553324 PLAGL2Q9UPG8 496 aa16.99■□□□□ 0.31
SHMT2-204ENST00000553324 TRANK1O15050 2925 aa16.99■□□□□ 0.31
SHMT2-204ENST00000553324 LRRIQ4A6NIV6 560 aa16.98■□□□□ 0.31
SHMT2-204ENST00000553324 PP2D1A8MPX8 630 aa16.98■□□□□ 0.31
SHMT2-204ENST00000553324 LAG3P18627 525 aa16.98■□□□□ 0.31
SHMT2-204ENST00000553324 NAMPTP43490 491 aa16.98■□□□□ 0.31
SHMT2-204ENST00000553324 GATMP50440 423 aa16.98■□□□□ 0.31
SHMT2-204ENST00000553324 MBTD1Q05BQ5 628 aa16.98■□□□□ 0.31
SHMT2-204ENST00000553324 AAK1Q2M2I8 961 aa16.98■□□□□ 0.31
SHMT2-204ENST00000553324 GLB1LQ6UWU2 654 aa16.98■□□□□ 0.31
SHMT2-204ENST00000553324 MRPL10Q7Z7H8 261 aaKnown RBP16.98■□□□□ 0.31
SHMT2-204ENST00000553324 LRRC43Q8N309 656 aa16.98■□□□□ 0.31
SHMT2-204ENST00000553324 CALML4Q96GE6 196 aa16.98■□□□□ 0.31
SHMT2-204ENST00000553324 PRIMPOLQ96LW4 560 aa16.98■□□□□ 0.31
SHMT2-204ENST00000553324 MMTAG2Q9BU76 263 aaKnown RBP16.98■□□□□ 0.31
SHMT2-204ENST00000553324 GPRC5CQ9NQ84 441 aa16.98■□□□□ 0.31
SHMT2-204ENST00000553324 PRMT7Q9NVM4 692 aaPredicted RBP16.98■□□□□ 0.31
SHMT2-204ENST00000553324 THEGQ9P2T0 379 aa16.98■□□□□ 0.31
SHMT2-204ENST00000553324 MTMR6Q9Y217 621 aa16.98■□□□□ 0.31
SHMT2-204ENST00000553324 PCDHB2Q9Y5E7 798 aa16.98■□□□□ 0.31
SHMT2-204ENST00000553324 UNC80Q8N2C7 3258 aa16.97■□□□□ 0.31
SHMT2-204ENST00000553324 E9PMD0 336 aa16.97■□□□□ 0.31
SHMT2-204ENST00000553324 NCK2O43639 380 aa16.97■□□□□ 0.31
SHMT2-204ENST00000553324 TSPAN1O60635 241 aa16.97■□□□□ 0.31
SHMT2-204ENST00000553324 EFNA5P52803 228 aa16.97■□□□□ 0.31
SHMT2-204ENST00000553324 UBE3AQ05086 875 aa16.97■□□□□ 0.31
SHMT2-204ENST00000553324 RESTQ13127 1097 aa16.97■□□□□ 0.31
SHMT2-204ENST00000553324 ZRSR1Q15695 479 aaKnown RBP16.97■□□□□ 0.31
SHMT2-204ENST00000553324 FAM187BQ17R55 369 aa16.97■□□□□ 0.31
SHMT2-204ENST00000553324 CDCA2Q69YH5 1023 aaPredicted RBP16.97■□□□□ 0.31
SHMT2-204ENST00000553324 CABP7Q86V35 215 aa16.97■□□□□ 0.31
SHMT2-204ENST00000553324 HACE1Q8IYU2 909 aa16.97■□□□□ 0.31
SHMT2-204ENST00000553324 DEPTORQ8TB45 409 aa16.97■□□□□ 0.31
SHMT2-204ENST00000553324 C17orf75Q9HAS0 396 aa16.97■□□□□ 0.31
SHMT2-204ENST00000553324 KCND2Q9NZV8 630 aa16.97■□□□□ 0.31
SHMT2-204ENST00000553324 KANSL3Q9P2N6 904 aa16.97■□□□□ 0.31
SHMT2-204ENST00000553324 LOXHD1Q8IVV2 1947 aa16.96■□□□□ 0.31
SHMT2-204ENST00000553324 ATF7P17544 494 aaPredicted RBP16.96■□□□□ 0.31
SHMT2-204ENST00000553324 PPM1AP35813 382 aa16.96■□□□□ 0.31
SHMT2-204ENST00000553324 MRPS5P82675 430 aaKnown RBP16.96■□□□□ 0.31
SHMT2-204ENST00000553324 MAPK6Q16659 721 aa16.96■□□□□ 0.31
SHMT2-204ENST00000553324 CLLU1OSQ5K130 101 aa16.96■□□□□ 0.31
SHMT2-204ENST00000553324 PPP4R3CPQ6ZMV5 832 aa16.96■□□□□ 0.31
SHMT2-204ENST00000553324 SYT2Q8N9I0 419 aaPredicted RBP16.96■□□□□ 0.31
SHMT2-204ENST00000553324 KLHL23Q8NBE8 558 aa16.96■□□□□ 0.31
SHMT2-204ENST00000553324 SPPL3Q8TCT6 385 aa16.96■□□□□ 0.31
SHMT2-204ENST00000553324 HELQQ8TDG4 1101 aa16.96■□□□□ 0.31
SHMT2-204ENST00000553324 SYMPKQ92797 1274 aaKnown RBP16.96■□□□□ 0.31
SHMT2-204ENST00000553324 HLA-CQ95604 372 aa16.96■□□□□ 0.31
SHMT2-204ENST00000553324 PPP2R3CQ969Q6 453 aa16.96■□□□□ 0.31
SHMT2-204ENST00000553324 DRC1Q96MC2 740 aa16.96■□□□□ 0.31
SHMT2-204ENST00000553324 TRIM6Q9C030 488 aaPredicted RBP16.96■□□□□ 0.31
SHMT2-204ENST00000553324 CSRNP2Q9H175 543 aa16.96■□□□□ 0.31
SHMT2-204ENST00000553324 FZD8Q9H461 694 aa16.96■□□□□ 0.31
SHMT2-204ENST00000553324 NSUN3Q9H649 340 aaKnown RBP16.96■□□□□ 0.31
SHMT2-204ENST00000553324 CWH43Q9H720 699 aa16.96■□□□□ 0.31
SHMT2-204ENST00000553324 RNF19AQ9NV58 838 aa16.96■□□□□ 0.31
SHMT2-204ENST00000553324 PUF60Q9UHX1 559 aaKnown RBP16.96■□□□□ 0.31
SHMT2-204ENST00000553324 PHLPP2Q6ZVD8 1323 aa16.96■□□□□ 0.3
SHMT2-204ENST00000553324 CNTNAP2Q9UHC6 1331 aa16.96■□□□□ 0.3
SHMT2-204ENST00000553324 SPTBN5Q9NRC6 3674 aaKnown RBP16.95■□□□□ 0.3
SHMT2-204ENST00000553324 A0A1B0GUA9 196 aa16.95■□□□□ 0.3
SHMT2-204ENST00000553324 GRM6O15303 877 aa16.95■□□□□ 0.3
SHMT2-204ENST00000553324 NCLP19338 710 aaKnown RBP16.95■□□□□ 0.3
SHMT2-204ENST00000553324 ALDH7A1P49419 539 aaKnown RBP16.95■□□□□ 0.3
SHMT2-204ENST00000553324 KRT17Q04695 432 aa16.95■□□□□ 0.3
SHMT2-204ENST00000553324 AMHR2Q16671 573 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms