RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 SBK1Q52WX2 424 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 ANO7Q6IWH7 933 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 POTEGQ6S5H5 508 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 POTEEQ6S8J3 1075 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 DPP8Q6V1X1 898 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-214ENST00000552783 H2AFVQ71UI9 128 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 FBXO33Q7Z6M2 555 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 PROM2Q8N271 834 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 SUPT20HQ8NEM7 779 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 TBC1D16Q8TBP0 767 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 P3H4Q92791 437 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 CEP95Q96GE4 821 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 SYT15Q9BQS2 421 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 UTP3Q9NQZ2 479 aaKnown RBP eCLIP5.24□□□□□ -1.571e-7■■■■■ 115.4
LIMA1-214ENST00000552783 AAASQ9NRG9 546 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 FAM114A2Q9NRY5 505 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 USP15Q9Y4E8 981 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-214ENST00000552783 EP400Q96L91 3159 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 COL22A1Q8NFW1 1626 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-214ENST00000552783 TMEM110-MUSTN1A8MSY1 372 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 MED24O75448 989 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 CYP11B2P19099 503 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 VCAM1P19320 739 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 CACNB3P54284 484 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 MARSP56192 900 aaKnown RBP5.24□□□□□ -1.57
LIMA1-214ENST00000552783 MAPK7Q13164 816 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 USH1GQ495M9 461 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 GPBP1Q86WP2 473 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 ECHDC2Q86YB7 292 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 SLC30A5Q8TAD4 765 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 ARHGEF1Q92888 912 aaKnown RBP5.24□□□□□ -1.57
LIMA1-214ENST00000552783 CNKSR1Q969H4 720 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 SAAL1Q96ER3 474 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 BTBD6Q96KE9 485 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 ADAM33Q9BZ11 813 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 ZC3H12CQ9C0D7 883 aaKnown RBP5.24□□□□□ -1.57
LIMA1-214ENST00000552783 GPR88Q9GZN0 384 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 NUCKS1Q9H1E3 243 aaKnown RBP5.24□□□□□ -1.57
LIMA1-214ENST00000552783 ACP6Q9NPH0 428 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 LUC7LQ9NQ29 371 aaKnown RBP5.24□□□□□ -1.57
LIMA1-214ENST00000552783 GGA1Q9UJY5 639 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 ROBO1Q9Y6N7 1651 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 LAMB1P07942 1786 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 MYH14Q7Z406 1995 aaKnown RBP5.23□□□□□ -1.57
LIMA1-214ENST00000552783 H0Y3Z8 333 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 ATMINO43313 823 aaPredicted RBP5.23□□□□□ -1.57
LIMA1-214ENST00000552783 PLA2G4BP0C869 781 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 TAL1P17542 331 aaPredicted RBP5.23□□□□□ -1.57
LIMA1-214ENST00000552783 ATP4AP20648 1035 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 CHKAP35790 457 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 EIF3BP55884 814 aaKnown RBP5.23□□□□□ -1.57
LIMA1-214ENST00000552783 SARNPP82979 210 aaKnown RBP5.23□□□□□ -1.57
LIMA1-214ENST00000552783 CTTNQ14247 550 aaKnown RBP5.23□□□□□ -1.57
LIMA1-214ENST00000552783 COG2Q14746 738 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 GALNT17Q6IS24 598 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 FAM47EQ6ZV65 393 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 KCTD1Q719H9 257 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 SLC20A1Q8WUM9 679 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 SLC35C1Q96A29 364 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 ELMO3Q96BJ8 720 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 OSBPL1AQ9BXW6 950 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 KCNQ5Q9NR82 932 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 GCNT4Q9P109 453 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 PRKAG3Q9UGI9 489 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 TBK1Q9UHD2 729 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 AMFRQ9UKV5 643 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 CORO1CQ9ULV4 474 aaPredicted RBP5.23□□□□□ -1.57
LIMA1-214ENST00000552783 PCDHB13Q9Y5F0 798 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 SNED1Q8TER0 1413 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP5.23□□□□□ -1.57
LIMA1-214ENST00000552783 CFAP73A6NFT4 308 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 RASGRF2O14827 1237 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 ATP2A2P16615 1042 aaKnown RBP5.23□□□□□ -1.57
LIMA1-214ENST00000552783 GNAZP19086 355 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 CCND1P24385 295 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 FOXN2P32314 431 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 PRKCIP41743 596 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 CDK8P49336 464 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 SNAP25P60880 206 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 TAF11Q15544 211 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 TMEM63BQ5T3F8 832 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 RBM26Q5T8P6 1007 aaKnown RBP5.23□□□□□ -1.57
LIMA1-214ENST00000552783 TTBK2Q6IQ55 1244 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 ZNF746Q6NUN9 644 aaPredicted RBP5.23□□□□□ -1.57
LIMA1-214ENST00000552783 CLEC4GQ6UXB4 293 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 HOOK3Q86VS8 718 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 TTC8Q8TAM2 541 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 CEP63Q96MT8 703 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 P2RX7Q99572 595 aaKnown RBP5.23□□□□□ -1.57
LIMA1-214ENST00000552783 SPZ1Q9BXG8 430 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 CCDC134Q9H6E4 229 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 ETNK1Q9HBU6 452 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 ARMCX3Q9UH62 379 aaPredicted RBP5.23□□□□□ -1.57
LIMA1-214ENST00000552783 ATAD5Q96QE3 1844 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 SCN7AQ01118 1682 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 CCDC169A6NNP5 214 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 USP17L15C9J2P7 530 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 USP17L13C9JLJ4 530 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 USP17L11C9JVI0 530 aa5.23□□□□□ -1.57
LIMA1-214ENST00000552783 USP17L18D6R9N7 530 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms