RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 CLRN2A0PK11 232 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 TCP10L2B9ZVM9 353 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 PIK3CDO00329 1044 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 PPP1R12BO60237 982 aaPredicted RBP8.12□□□□□ -1.11
LIMA1-213ENST00000552720 HIP1RO75146 1068 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 LMNB1P20700 586 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 GUCY2CP25092 1073 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 ALDH1B1P30837 517 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 FNTAP49354 379 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 ZNF131P52739 623 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 NPEPPSP55786 919 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 BFSP1Q12934 665 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 MAPK7Q13164 816 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 PPP2R5CQ13362 524 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 SLC15A2Q16348 729 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 AOC3Q16853 763 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 STRIP1Q5VSL9 837 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 ICE2Q659A1 982 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 B4GALNT4Q76KP1 1039 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 HS2ST1Q7LGA3 356 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 SYCP3Q8IZU3 236 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 OTUD6BQ8N6M0 293 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 CCDC26Q8TAB7 109 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 LMO3Q8TAP4 145 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 SEC14L1Q92503 715 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 C18orf8Q96DM3 657 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 LXNQ9BS40 222 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 ZNF577Q9BSK1 485 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 SLITRK6Q9H5Y7 841 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 GOPCQ9HD26 462 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 UBE2TQ9NPD8 197 aaPredicted RBP8.12□□□□□ -1.11
LIMA1-213ENST00000552720 DMAC2Q9NW81 257 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 INTUQ9ULD6 942 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 FRMD4BQ9Y2L6 1034 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 SNX24Q9Y343 169 aa8.12□□□□□ -1.11
LIMA1-213ENST00000552720 UTP11Q9Y3A2 253 aaKnown RBP8.12□□□□□ -1.11
LIMA1-213ENST00000552720 EMSYQ7Z589 1322 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 CAND2O75155 1236 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 CLSTN1O94985 981 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 FAM107AO95990 144 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 HNRNPH1P31943 449 aaKnown RBP8.11□□□□□ -1.11
LIMA1-213ENST00000552720 GCLMP48507 274 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 PLTPP55058 493 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 PTENP60484 403 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 PPP2R2AP63151 447 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 DR1Q01658 176 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 PPP3CAQ08209 521 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 EIF1ADQ8N9N8 165 aaKnown RBP8.11□□□□□ -1.11
LIMA1-213ENST00000552720 C1orf131Q8NDD1 294 aaKnown RBP8.11□□□□□ -1.11
LIMA1-213ENST00000552720 UHMK1Q8TAS1 419 aaKnown RBP8.11□□□□□ -1.11
LIMA1-213ENST00000552720 PLEKHO2Q8TD55 490 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.11□□□□□ -1.112e-6■■■■■ 29
LIMA1-213ENST00000552720 CYFIP2Q96F07 1278 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 MASTLQ96GX5 879 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 BTBD6Q96KE9 485 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 FMO2Q99518 471 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 CBWD1Q9BRT8 395 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 GLIS2Q9BZE0 524 aaPredicted RBP8.11□□□□□ -1.11
LIMA1-213ENST00000552720 EPB41L4BQ9H329 900 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 ZBTB21Q9ULJ3 1066 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 ALG6Q9Y672 507 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 DOCK5Q9H7D0 1870 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 TCRBV7S2A1N4TA0A589 114 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 SMIM23A6NLE4 172 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 A6NNZ2 444 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 K7ENM7 598 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 KIAA0754O94854 1291 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 POLR2MP0CAP2 368 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 KRT13P13646 458 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 VCAM1P19320 739 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 ANXA13P27216 316 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 USP8P40818 1118 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 TUBB8Q3ZCM7 444 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 CEP55Q53EZ4 464 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 SLC27A3Q5K4L6 730 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 FBXO25Q8TCJ0 367 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 RAPGEF5Q92565 580 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 AGPAT1Q99943 283 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 MKNK1Q9BUB5 465 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 TMX4Q9H1E5 349 aaPredicted RBP8.11□□□□□ -1.11
LIMA1-213ENST00000552720 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.11□□□□□ -1.11
LIMA1-213ENST00000552720 ZDHHC18Q9NUE0 388 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 CTTNBP2NLQ9P2B4 639 aa8.11□□□□□ -1.11
LIMA1-213ENST00000552720 GMNCA6NCL1 334 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 PHF20L1A8MW92 1017 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 IPO5O00410 1097 aaKnown RBP8.1□□□□□ -1.11
LIMA1-213ENST00000552720 TRAPPC3O43617 180 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 ONECUT3O60422 494 aaPredicted RBP8.1□□□□□ -1.11
LIMA1-213ENST00000552720 FTLP02792 175 aaPredicted RBP8.1□□□□□ -1.11
LIMA1-213ENST00000552720 CHRNA5P30532 468 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 SF3B2Q13435 895 aaKnown RBP8.1□□□□□ -1.11
LIMA1-213ENST00000552720 BYSLQ13895 437 aaKnown RBP8.1□□□□□ -1.11
LIMA1-213ENST00000552720 KIF22Q14807 665 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 NFIL3Q16649 462 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 GRIPAP1Q4V328 841 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 C1orf220Q5T0J3 134 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 DUPD1Q68J44 220 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 MCTP2Q6DN12 878 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 TTC27Q6P3X3 843 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 ZDHHC24Q6UX98 284 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms