RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-223ENST00000551623 OTOP1Q7RTM1 612 aa3.15□□□□□ -1.91
PTCH1-223ENST00000551623 C2orf69Q8N8R5 385 aa3.15□□□□□ -1.91
PTCH1-223ENST00000551623 NUDT10Q8NFP7 164 aa3.15□□□□□ -1.91
PTCH1-223ENST00000551623 DPF2Q92785 391 aa3.15□□□□□ -1.91
PTCH1-223ENST00000551623 NUDT11Q96G61 164 aa3.15□□□□□ -1.91
PTCH1-223ENST00000551623 ZNF333Q96JL9 665 aa3.15□□□□□ -1.91
PTCH1-223ENST00000551623 TMEM209Q96SK2 561 aa3.15□□□□□ -1.91
PTCH1-223ENST00000551623 MRS2Q9HD23 443 aa3.15□□□□□ -1.91
PTCH1-223ENST00000551623 TMEFF2Q9UIK5 374 aaPredicted RBP3.15□□□□□ -1.91
PTCH1-223ENST00000551623 HDAC9Q9UKV0 1011 aa3.15□□□□□ -1.91
PTCH1-223ENST00000551623 SPTBN5Q9NRC6 3674 aaKnown RBP3.15□□□□□ -1.91
PTCH1-223ENST00000551623 KDM3BQ7LBC6 1761 aa3.15□□□□□ -1.91
PTCH1-223ENST00000551623 PAPPA2Q9BXP8 1791 aa3.15□□□□□ -1.91
PTCH1-223ENST00000551623 CACNA1SQ13698 1873 aa3.14□□□□□ -1.91
PTCH1-223ENST00000551623 CACNA1AO00555 2505 aa3.14□□□□□ -1.91
PTCH1-223ENST00000551623 MUC3AQ02505 3323 aa3.14□□□□□ -1.91
PTCH1-223ENST00000551623 ST20-MTHFSA0A0A6YYL1 179 aa3.14□□□□□ -1.91
PTCH1-223ENST00000551623 C2orf71A6NGG8 1288 aa3.14□□□□□ -1.91
PTCH1-223ENST00000551623 PATL2C9JE40 543 aaKnown RBP3.14□□□□□ -1.91
PTCH1-223ENST00000551623 VAMP4O75379 141 aa3.14□□□□□ -1.91
PTCH1-223ENST00000551623 KLHL18O94889 574 aa3.14□□□□□ -1.91
PTCH1-223ENST00000551623 COL6A1P12109 1028 aa3.14□□□□□ -1.91
PTCH1-223ENST00000551623 KRT4P19013 534 aa3.14□□□□□ -1.91
PTCH1-223ENST00000551623 ACRV1P26436 265 aa3.14□□□□□ -1.91
PTCH1-223ENST00000551623 MCM4P33991 863 aa3.14□□□□□ -1.91
PTCH1-223ENST00000551623 MTHFSP49914 203 aa3.14□□□□□ -1.91
PTCH1-223ENST00000551623 GMPSP49915 693 aaPredicted RBP3.14□□□□□ -1.91
PTCH1-223ENST00000551623 CXCL9Q07325 125 aa3.14□□□□□ -1.91
PTCH1-223ENST00000551623 EIF4A2Q14240 407 aaKnown RBP3.14□□□□□ -1.91
PTCH1-223ENST00000551623 TCEAL1Q15170 157 aa3.14□□□□□ -1.91
PTCH1-223ENST00000551623 DPY19L1Q2PZI1 675 aa3.14□□□□□ -1.91
PTCH1-223ENST00000551623 PLEKHO1Q53GL0 409 aaPredicted RBP3.14□□□□□ -1.91
PTCH1-223ENST00000551623 OLFM4Q6UX06 510 aa3.14□□□□□ -1.91
PTCH1-223ENST00000551623 RUFY4Q6ZNE9 571 aa3.14□□□□□ -1.91
PTCH1-223ENST00000551623 KRT26Q7Z3Y9 468 aa3.14□□□□□ -1.91
PTCH1-223ENST00000551623 TEX2Q8IWB9 1127 aa3.14□□□□□ -1.91
PTCH1-223ENST00000551623 GIPC2Q8TF65 315 aa3.14□□□□□ -1.91
PTCH1-223ENST00000551623 DPF3Q92784 378 aa3.14□□□□□ -1.91
PTCH1-223ENST00000551623 TOE1Q96GM8 510 aaKnown RBP3.14□□□□□ -1.91
PTCH1-223ENST00000551623 SLC52A2Q9HAB3 445 aa3.14□□□□□ -1.91
PTCH1-223ENST00000551623 FAM86C1Q9NVL1 165 aa3.14□□□□□ -1.91
PTCH1-223ENST00000551623 DTLQ9NZJ0 730 aa3.14□□□□□ -1.91
PTCH1-223ENST00000551623 POLKQ9UBT6 870 aa3.14□□□□□ -1.91
PTCH1-223ENST00000551623 GGT7Q9UJ14 662 aa3.14□□□□□ -1.91
PTCH1-223ENST00000551623 ZNRF3Q9ULT6 936 aa3.14□□□□□ -1.91
PTCH1-223ENST00000551623 PTPN22Q9Y2R2 807 aa3.14□□□□□ -1.91
PTCH1-223ENST00000551623 VCANP13611 3396 aa3.14□□□□□ -1.91
PTCH1-223ENST00000551623 COL2A1P02458 1487 aaPredicted RBP3.14□□□□□ -1.91
PTCH1-223ENST00000551623 DUOX1Q9NRD9 1551 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 C22orf46C9J442 243 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 RAD17O75943 681 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 STARD3NLO95772 234 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 THBDP07204 575 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 CAPN2P17655 700 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 EN2P19622 333 aaPredicted RBP3.13□□□□□ -1.91
PTCH1-223ENST00000551623 RPS12P25398 132 aaKnown RBP3.13□□□□□ -1.91
PTCH1-223ENST00000551623 ADRA1BP35368 520 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 KRTAP10-7P60409 375 aaPredicted RBP3.13□□□□□ -1.91
PTCH1-223ENST00000551623 APOBRQ0VD83 1088 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 LRIT3Q3SXY7 679 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 ZNF394Q53GI3 561 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 ZKSCAN2Q63HK3 967 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 MBLAC2Q68D91 279 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 FAM109BQ6ICB4 259 aaPredicted RBP3.13□□□□□ -1.91
PTCH1-223ENST00000551623 ZNF530Q6P9A1 599 aaPredicted RBP3.13□□□□□ -1.91
PTCH1-223ENST00000551623 TEPPQ6URK8 271 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 MAMDC4Q6UXC1 1216 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 Q6ZUG5 572 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 GPR155Q7Z3F1 870 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 POLNQ7Z5Q5 900 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 NIM1KQ8IY84 436 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 ULK2Q8IYT8 1036 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 ADCY4Q8NFM4 1077 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 NKD1Q969G9 470 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 CLIP3Q96DZ5 547 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 NEIL1Q96FI4 390 aaPredicted RBP3.13□□□□□ -1.91
PTCH1-223ENST00000551623 FAM89AQ96GI7 184 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 ZNF496Q96IT1 587 aaPredicted RBP3.13□□□□□ -1.91
PTCH1-223ENST00000551623 TTPALQ9BTX7 342 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 NT5C1AQ9BXI3 368 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 TEX13AQ9BXU3 409 aaPredicted RBP3.13□□□□□ -1.91
PTCH1-223ENST00000551623 GZF1Q9H116 711 aaPredicted RBP3.13□□□□□ -1.91
PTCH1-223ENST00000551623 MTMR10Q9NXD2 777 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 WHRNQ9P202 907 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 PCDHGB7Q9Y5F8 929 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 KIF20BQ96Q89 1820 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 KIAA0100Q14667 2235 aaKnown RBP3.13□□□□□ -1.91
PTCH1-223ENST00000551623 AKAP11Q9UKA4 1901 aa3.13□□□□□ -1.91
PTCH1-223ENST00000551623 HEG1Q9ULI3 1381 aa3.12□□□□□ -1.91
PTCH1-223ENST00000551623 UNCXA6NJT0 531 aa3.12□□□□□ -1.91
PTCH1-223ENST00000551623 CBFA2T2O43439 604 aa3.12□□□□□ -1.91
PTCH1-223ENST00000551623 CSF2RBP32927 897 aa3.12□□□□□ -1.91
PTCH1-223ENST00000551623 RACK1P63244 317 aaKnown RBP3.12□□□□□ -1.91
PTCH1-223ENST00000551623 SREBF2Q12772 1141 aa3.12□□□□□ -1.91
PTCH1-223ENST00000551623 TNIP1Q15025 636 aa3.12□□□□□ -1.91
PTCH1-223ENST00000551623 CCDC27Q2M243 656 aa3.12□□□□□ -1.91
PTCH1-223ENST00000551623 MROH9Q5TGP6 573 aa3.12□□□□□ -1.91
PTCH1-223ENST00000551623 Q6ZPA2 131 aa3.12□□□□□ -1.91
PTCH1-223ENST00000551623 NBPF5PQ86XG9 351 aaPredicted RBP3.12□□□□□ -1.91
PTCH1-223ENST00000551623 RIOX2Q8IUF8 465 aa3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms