RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 CDC25AP30304 524 aa13.17□□□□□ -0.3
YBX3-217ENST00000546164 HOXA11P31270 313 aaPredicted RBP13.17□□□□□ -0.3
YBX3-217ENST00000546164 GATMP50440 423 aa13.17□□□□□ -0.3
YBX3-217ENST00000546164 RAB27AP51159 221 aa13.17□□□□□ -0.3
YBX3-217ENST00000546164 MBTD1Q05BQ5 628 aa13.17□□□□□ -0.3
YBX3-217ENST00000546164 SF3A1Q15459 793 aaKnown RBP13.17□□□□□ -0.3
YBX3-217ENST00000546164 FAM102BQ5T8I3 360 aa13.17□□□□□ -0.3
YBX3-217ENST00000546164 GDPD5Q8WTR4 605 aa13.17□□□□□ -0.3
YBX3-217ENST00000546164 CCDC51Q96ER9 411 aa13.17□□□□□ -0.3
YBX3-217ENST00000546164 GPRC5CQ9NQ84 441 aa13.17□□□□□ -0.3
YBX3-217ENST00000546164 MRPL42Q9Y6G3 142 aaKnown RBP13.17□□□□□ -0.3
YBX3-217ENST00000546164 SPTBN5Q9NRC6 3674 aaKnown RBP13.17□□□□□ -0.3
YBX3-217ENST00000546164 REV3LO60673 3130 aa13.17□□□□□ -0.3
YBX3-217ENST00000546164 FGFR1P11362 822 aa13.16□□□□□ -0.3
YBX3-217ENST00000546164 AXLP30530 894 aa13.16□□□□□ -0.3
YBX3-217ENST00000546164 CTNNB1P35222 781 aa13.16□□□□□ -0.3
YBX3-217ENST00000546164 LONP1P36776 959 aaKnown RBP13.16□□□□□ -0.3
YBX3-217ENST00000546164 GPM6BQ13491 265 aa13.16□□□□□ -0.3
YBX3-217ENST00000546164 PTPAQ15257 358 aa13.16□□□□□ -0.3
YBX3-217ENST00000546164 AMHR2Q16671 573 aa13.16□□□□□ -0.3
YBX3-217ENST00000546164 PAN2Q504Q3 1202 aaKnown RBP13.16□□□□□ -0.3
YBX3-217ENST00000546164 NAALADL2Q58DX5 795 aa13.16□□□□□ -0.3
YBX3-217ENST00000546164 CDCA2Q69YH5 1023 aaPredicted RBP13.16□□□□□ -0.3
YBX3-217ENST00000546164 TWF2Q6IBS0 349 aaKnown RBP13.16□□□□□ -0.3
YBX3-217ENST00000546164 KIFAP3Q92845 792 aa13.16□□□□□ -0.3
YBX3-217ENST00000546164 P2RX5Q93086 422 aa13.16□□□□□ -0.3
YBX3-217ENST00000546164 MRPL38Q96DV4 380 aaKnown RBP13.16□□□□□ -0.3
YBX3-217ENST00000546164 PNMA5Q96PV4 448 aa13.16□□□□□ -0.3
YBX3-217ENST00000546164 C11orf84Q9BUA3 381 aaPredicted RBP13.16□□□□□ -0.3
YBX3-217ENST00000546164 NT5C3AQ9H0P0 336 aa13.16□□□□□ -0.3
YBX3-217ENST00000546164 LMAN2LQ9H0V9 348 aa13.16□□□□□ -0.3
YBX3-217ENST00000546164 FAM105AQ9NUU6 356 aa13.16□□□□□ -0.3
YBX3-217ENST00000546164 RALGAPA2Q2PPJ7 1873 aa13.15□□□□□ -0.3
YBX3-217ENST00000546164 TBKBP1A7MCY6 615 aa13.15□□□□□ -0.3
YBX3-217ENST00000546164 E9PMD0 336 aa13.15□□□□□ -0.3
YBX3-217ENST00000546164 INO80B-WBP1J3KQ70 363 aa13.15□□□□□ -0.3
YBX3-217ENST00000546164 TSPAN1O60635 241 aa13.15□□□□□ -0.3
YBX3-217ENST00000546164 ERLIN2O94905 339 aa13.15□□□□□ -0.3
YBX3-217ENST00000546164 NAMPTP43490 491 aa13.15□□□□□ -0.3
YBX3-217ENST00000546164 PPP2R5AQ15172 486 aa13.15□□□□□ -0.3
YBX3-217ENST00000546164 PTPROQ16827 1216 aa13.15□□□□□ -0.3
YBX3-217ENST00000546164 TMEM119Q4V9L6 283 aa13.15□□□□□ -0.3
YBX3-217ENST00000546164 CLLU1OSQ5K130 101 aa13.15□□□□□ -0.3
YBX3-217ENST00000546164 MAEAQ7L5Y9 396 aa13.15□□□□□ -0.3
YBX3-217ENST00000546164 KCNK18Q7Z418 384 aa13.15□□□□□ -0.3
YBX3-217ENST00000546164 MRPL10Q7Z7H8 261 aaKnown RBP13.15□□□□□ -0.3
YBX3-217ENST00000546164 BSNDQ8WZ55 320 aa13.15□□□□□ -0.3
YBX3-217ENST00000546164 PRIMPOLQ96LW4 560 aa13.15□□□□□ -0.3
YBX3-217ENST00000546164 CASD1Q96PB1 797 aa13.15□□□□□ -0.3
YBX3-217ENST00000546164 CLIC4Q9Y696 253 aa13.15□□□□□ -0.3
YBX3-217ENST00000546164 CUL9Q8IWT3 2517 aa13.15□□□□□ -0.3
YBX3-217ENST00000546164 COL4A4P53420 1690 aaPredicted RBP13.15□□□□□ -0.31
YBX3-217ENST00000546164 TTC28Q96AY4 2481 aa13.14□□□□□ -0.31
YBX3-217ENST00000546164 LRRIQ4A6NIV6 560 aa13.14□□□□□ -0.31
YBX3-217ENST00000546164 HSP90AA1P07900 732 aaKnown RBP13.14□□□□□ -0.31
YBX3-217ENST00000546164 IBSPP21815 317 aaPredicted RBP13.14□□□□□ -0.31
YBX3-217ENST00000546164 GUCY2CP25092 1073 aa13.14□□□□□ -0.31
YBX3-217ENST00000546164 UBA7P41226 1012 aa13.14□□□□□ -0.31
YBX3-217ENST00000546164 CLCN6P51797 869 aa13.14□□□□□ -0.31
YBX3-217ENST00000546164 NCBP1Q09161 790 aaKnown RBP13.14□□□□□ -0.31
YBX3-217ENST00000546164 FAM187BQ17R55 369 aa13.14□□□□□ -0.31
YBX3-217ENST00000546164 CSPP1Q1MSJ5 1256 aa13.14□□□□□ -0.31
YBX3-217ENST00000546164 UBXN11Q5T124 520 aa13.14□□□□□ -0.31
YBX3-217ENST00000546164 FAM173BQ6P4H8 233 aa13.14□□□□□ -0.31
YBX3-217ENST00000546164 NOTUMQ6P988 496 aa13.14□□□□□ -0.31
YBX3-217ENST00000546164 C1orf186Q6ZWK4 172 aa13.14□□□□□ -0.31
YBX3-217ENST00000546164 CABP7Q86V35 215 aa13.14□□□□□ -0.31
YBX3-217ENST00000546164 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.14□□□□□ -0.31
YBX3-217ENST00000546164 ZBTB8OSQ8IWT0 167 aa13.14□□□□□ -0.31
YBX3-217ENST00000546164 ABI1Q8IZP0 508 aa13.14□□□□□ -0.31
YBX3-217ENST00000546164 LRRC43Q8N309 656 aa13.14□□□□□ -0.31
YBX3-217ENST00000546164 SYT2Q8N9I0 419 aaPredicted RBP13.14□□□□□ -0.31
YBX3-217ENST00000546164 SLC17A8Q8NDX2 589 aa13.14□□□□□ -0.31
YBX3-217ENST00000546164 PGBD4Q96DM1 585 aa13.14□□□□□ -0.31
YBX3-217ENST00000546164 CDK5RAP3Q96JB5 506 aa13.14□□□□□ -0.31
YBX3-217ENST00000546164 TIPINQ9BVW5 301 aa13.14□□□□□ -0.31
YBX3-217ENST00000546164 MRPL9Q9BYD2 267 aaKnown RBP13.14□□□□□ -0.31
YBX3-217ENST00000546164 C2orf40Q9H1Z8 148 aa13.14□□□□□ -0.31
YBX3-217ENST00000546164 FZD8Q9H461 694 aa13.14□□□□□ -0.31
YBX3-217ENST00000546164 CWH43Q9H720 699 aa13.14□□□□□ -0.31
YBX3-217ENST00000546164 AAASQ9NRG9 546 aa13.14□□□□□ -0.31
YBX3-217ENST00000546164 TYW1Q9NV66 732 aaKnown RBP13.14□□□□□ -0.31
YBX3-217ENST00000546164 PRMT7Q9NVM4 692 aaPredicted RBP13.14□□□□□ -0.31
YBX3-217ENST00000546164 KCND2Q9NZV8 630 aa13.14□□□□□ -0.31
YBX3-217ENST00000546164 DAXXQ9UER7 740 aaPredicted RBP13.14□□□□□ -0.31
YBX3-217ENST00000546164 PCDHB2Q9Y5E7 798 aa13.14□□□□□ -0.31
YBX3-217ENST00000546164 VCANP13611 3396 aa13.14□□□□□ -0.31
YBX3-217ENST00000546164 XIRP2A4UGR9 3374 aa13.13□□□□□ -0.31
YBX3-217ENST00000546164 FNDC1Q4ZHG4 1894 aaPredicted RBP13.13□□□□□ -0.31
YBX3-217ENST00000546164 ARF4P18085 180 aaPredicted RBP13.13□□□□□ -0.31
YBX3-217ENST00000546164 LAG3P18627 525 aa13.13□□□□□ -0.31
YBX3-217ENST00000546164 NASPP49321 788 aaPredicted RBP13.13□□□□□ -0.31
YBX3-217ENST00000546164 SLC12A3P55017 1021 aa13.13□□□□□ -0.31
YBX3-217ENST00000546164 GRIN1Q05586 938 aa13.13□□□□□ -0.31
YBX3-217ENST00000546164 TIGD5Q53EQ6 642 aa13.13□□□□□ -0.31
YBX3-217ENST00000546164 RINT1Q6NUQ1 792 aa13.13□□□□□ -0.31
YBX3-217ENST00000546164 LRRC55Q6ZSA7 311 aa13.13□□□□□ -0.31
YBX3-217ENST00000546164 DAW1Q8N136 415 aa13.13□□□□□ -0.31
YBX3-217ENST00000546164 RNF169Q8NCN4 708 aa13.13□□□□□ -0.31
YBX3-217ENST00000546164 CNNM3Q8NE01 707 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms