RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 MMS22LQ6ZRQ5 1243 aa17.1■□□□□ 0.33
LDLR-204ENST00000545707 COL23A1Q86Y22 540 aaPredicted RBP17.1■□□□□ 0.33
LDLR-204ENST00000545707 ARFGAP2Q8N6H7 521 aa17.1■□□□□ 0.33
LDLR-204ENST00000545707 LMO3Q8TAP4 145 aa17.1■□□□□ 0.33
LDLR-204ENST00000545707 UHMK1Q8TAS1 419 aaKnown RBP17.1■□□□□ 0.33
LDLR-204ENST00000545707 SEC14L1Q92503 715 aa17.1■□□□□ 0.33
LDLR-204ENST00000545707 ELMO3Q96BJ8 720 aa17.1■□□□□ 0.33
LDLR-204ENST00000545707 C18orf8Q96DM3 657 aa17.1■□□□□ 0.33
LDLR-204ENST00000545707 FMO2Q99518 471 aa17.1■□□□□ 0.33
LDLR-204ENST00000545707 MKNK1Q9BUB5 465 aa17.1■□□□□ 0.33
LDLR-204ENST00000545707 FBXO28Q9NVF7 368 aa17.1■□□□□ 0.33
LDLR-204ENST00000545707 EMSYQ7Z589 1322 aa17.1■□□□□ 0.33
LDLR-204ENST00000545707 GMNCA6NCL1 334 aa17.1■□□□□ 0.33
LDLR-204ENST00000545707 SMIM23A6NLE4 172 aa17.1■□□□□ 0.33
LDLR-204ENST00000545707 ATMINO43313 823 aaPredicted RBP17.1■□□□□ 0.33
LDLR-204ENST00000545707 FTLP02792 175 aaPredicted RBP17.1■□□□□ 0.33
LDLR-204ENST00000545707 KRT13P13646 458 aa17.1■□□□□ 0.33
LDLR-204ENST00000545707 GCLMP48507 274 aa17.1■□□□□ 0.33
LDLR-204ENST00000545707 ZNF131P52739 623 aa17.1■□□□□ 0.33
LDLR-204ENST00000545707 PTENP60484 403 aa17.1■□□□□ 0.33
LDLR-204ENST00000545707 MKRN4PQ13434 485 aaPredicted RBP17.1■□□□□ 0.33
LDLR-204ENST00000545707 SLC27A3Q5K4L6 730 aa17.1■□□□□ 0.33
LDLR-204ENST00000545707 NACC1Q96RE7 527 aa17.1■□□□□ 0.33
LDLR-204ENST00000545707 AGPAT1Q99943 283 aa17.1■□□□□ 0.33
LDLR-204ENST00000545707 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.1■□□□□ 0.33
LDLR-204ENST00000545707 FAM114A2Q9NRY5 505 aa17.1■□□□□ 0.33
LDLR-204ENST00000545707 CTTNBP2NLQ9P2B4 639 aa17.1■□□□□ 0.33
LDLR-204ENST00000545707 AFF2P51816 1311 aa17.1■□□□□ 0.33
LDLR-204ENST00000545707 CLRN2A0PK11 232 aa17.09■□□□□ 0.33
LDLR-204ENST00000545707 CAND2O75155 1236 aa17.09■□□□□ 0.33
LDLR-204ENST00000545707 PPP3CAQ08209 521 aa17.09■□□□□ 0.33
LDLR-204ENST00000545707 MAPK7Q13164 816 aa17.09■□□□□ 0.33
LDLR-204ENST00000545707 BIRC3Q13489 604 aa17.09■□□□□ 0.33
LDLR-204ENST00000545707 MTMR3Q13615 1198 aa17.09■□□□□ 0.33
LDLR-204ENST00000545707 AOC3Q16853 763 aa17.09■□□□□ 0.33
LDLR-204ENST00000545707 RAPGEF5Q92565 580 aa17.09■□□□□ 0.33
LDLR-204ENST00000545707 MASTLQ96GX5 879 aa17.09■□□□□ 0.33
LDLR-204ENST00000545707 CBWD1Q9BRT8 395 aa17.09■□□□□ 0.33
LDLR-204ENST00000545707 ERP44Q9BS26 406 aa17.09■□□□□ 0.33
LDLR-204ENST00000545707 DDX20Q9UHI6 824 aaKnown RBP17.09■□□□□ 0.33
LDLR-204ENST00000545707 DAAM1Q9Y4D1 1078 aa17.09■□□□□ 0.33
LDLR-204ENST00000545707 TLDC2A0PJX2 215 aa17.09■□□□□ 0.33
LDLR-204ENST00000545707 ARHGEF35A5YM69 484 aa17.09■□□□□ 0.33
LDLR-204ENST00000545707 ANKRD62A6NC57 917 aa17.09■□□□□ 0.33
LDLR-204ENST00000545707 PHF20L1A8MW92 1017 aa17.09■□□□□ 0.33
LDLR-204ENST00000545707 K7ENM7 598 aa17.09■□□□□ 0.33
LDLR-204ENST00000545707 GTF2A1P52655 376 aaPredicted RBP17.09■□□□□ 0.33
LDLR-204ENST00000545707 SPRED3Q2MJR0 410 aa17.09■□□□□ 0.33
LDLR-204ENST00000545707 DUPD1Q68J44 220 aa17.09■□□□□ 0.33
LDLR-204ENST00000545707 ZDHHC14Q8IZN3 488 aa17.09■□□□□ 0.33
LDLR-204ENST00000545707 ZBTB21Q9ULJ3 1066 aa17.09■□□□□ 0.33
LDLR-204ENST00000545707 TTC7AQ9ULT0 858 aaPredicted RBP17.09■□□□□ 0.33
LDLR-204ENST00000545707 ANKRD31Q8N7Z5 1873 aa17.09■□□□□ 0.33
LDLR-204ENST00000545707 TMEM150BA6NC51 233 aa17.08■□□□□ 0.33
LDLR-204ENST00000545707 TRAPPC3O43617 180 aa17.08■□□□□ 0.33
LDLR-204ENST00000545707 FBXO25Q8TCJ0 367 aa17.08■□□□□ 0.33
LDLR-204ENST00000545707 BTBD6Q96KE9 485 aa17.08■□□□□ 0.33
LDLR-204ENST00000545707 CARD9Q9H257 536 aa17.08■□□□□ 0.33
LDLR-204ENST00000545707 EPB41L4BQ9H329 900 aa17.08■□□□□ 0.33
LDLR-204ENST00000545707 ZDHHC18Q9NUE0 388 aa17.08■□□□□ 0.33
LDLR-204ENST00000545707 PNMA2Q9UL42 364 aa17.08■□□□□ 0.33
LDLR-204ENST00000545707 IPO5O00410 1097 aaKnown RBP17.08■□□□□ 0.32
LDLR-204ENST00000545707 VCAM1P19320 739 aa17.08■□□□□ 0.32
LDLR-204ENST00000545707 MESDQ14696 234 aa17.08■□□□□ 0.32
LDLR-204ENST00000545707 NFIL3Q16649 462 aa17.08■□□□□ 0.32
LDLR-204ENST00000545707 MICALCLQ6ZW33 695 aa17.08■□□□□ 0.32
LDLR-204ENST00000545707 JAMLQ86YT9 394 aa17.08■□□□□ 0.32
LDLR-204ENST00000545707 CDAN1Q8IWY9 1227 aa17.08■□□□□ 0.32
LDLR-204ENST00000545707 RPUSD2Q8IZ73 545 aaKnown RBP17.08■□□□□ 0.32
LDLR-204ENST00000545707 TCRBV7S2A1N4TA0A589 114 aa17.07■□□□□ 0.32
LDLR-204ENST00000545707 PPFIA2O75334 1257 aa17.07■□□□□ 0.32
LDLR-204ENST00000545707 SGPL1O95470 568 aa17.07■□□□□ 0.32
LDLR-204ENST00000545707 PDE6BP35913 854 aa17.07■□□□□ 0.32
LDLR-204ENST00000545707 KIF22Q14807 665 aa17.07■□□□□ 0.32
LDLR-204ENST00000545707 PPP2R5AQ15172 486 aa17.07■□□□□ 0.32
LDLR-204ENST00000545707 AGBL2Q5U5Z8 902 aa17.07■□□□□ 0.32
LDLR-204ENST00000545707 NLGN1Q8N2Q7 840 aa17.07■□□□□ 0.32
LDLR-204ENST00000545707 PLEKHO2Q8TD55 490 aa17.07■□□□□ 0.32
LDLR-204ENST00000545707 PCDHB18PQ96TA0 734 aa17.07■□□□□ 0.32
LDLR-204ENST00000545707 MRIQ9BWK5 157 aa17.07■□□□□ 0.32
LDLR-204ENST00000545707 RAB17Q9H0T7 212 aa17.07■□□□□ 0.32
LDLR-204ENST00000545707 SEL1LQ9UBV2 794 aa17.07■□□□□ 0.32
LDLR-204ENST00000545707 SERPINA10Q9UK55 444 aa17.07■□□□□ 0.32
LDLR-204ENST00000545707 ATP8B3O60423 1300 aa17.07■□□□□ 0.32
LDLR-204ENST00000545707 SCN9AQ15858 1988 aa17.07■□□□□ 0.32
LDLR-204ENST00000545707 KIF13BQ9NQT8 1826 aa17.07■□□□□ 0.32
LDLR-204ENST00000545707 NRXN2Q9P2S2 1712 aa17.07■□□□□ 0.32
LDLR-204ENST00000545707 GOLGA8IPA6NC78 632 aa17.07■□□□□ 0.32
LDLR-204ENST00000545707 GOLGA8JA6NMD2 632 aa17.07■□□□□ 0.32
LDLR-204ENST00000545707 PADI6Q6TGC4 694 aa17.07■□□□□ 0.32
LDLR-204ENST00000545707 C6orf89Q6UWU4 347 aa17.07■□□□□ 0.32
LDLR-204ENST00000545707 RNF25Q96BH1 459 aaPredicted RBP17.07■□□□□ 0.32
LDLR-204ENST00000545707 TXLNGYQ9BZA5 131 aa17.07■□□□□ 0.32
LDLR-204ENST00000545707 ONECUT3O60422 494 aaPredicted RBP17.06■□□□□ 0.32
LDLR-204ENST00000545707 ATP2C2O75185 946 aa17.06■□□□□ 0.32
LDLR-204ENST00000545707 VIL1P09327 827 aaKnown RBP17.06■□□□□ 0.32
LDLR-204ENST00000545707 GRIPAP1Q4V328 841 aa17.06■□□□□ 0.32
LDLR-204ENST00000545707 TTC27Q6P3X3 843 aa17.06■□□□□ 0.32
LDLR-204ENST00000545707 ZDHHC24Q6UX98 284 aa17.06■□□□□ 0.32
LDLR-204ENST00000545707 STXBP4Q6ZWJ1 553 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms