RNA–Protein interactions for RNA: ENST00000541667.5

CLSTN3-211, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 671 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-211ENST00000541667 SLFN12Q8IYM2 578 aa13.21□□□□□ -0.29
CLSTN3-211ENST00000541667 MRPL43Q8N983 215 aaKnown RBP13.21□□□□□ -0.29
CLSTN3-211ENST00000541667 RNF169Q8NCN4 708 aa13.21□□□□□ -0.29
CLSTN3-211ENST00000541667 PPP2R3CQ969Q6 453 aa13.21□□□□□ -0.29
CLSTN3-211ENST00000541667 NLRP4Q96MN2 994 aa13.21□□□□□ -0.29
CLSTN3-211ENST00000541667 ZNF558Q96NG5 402 aa13.21□□□□□ -0.29
CLSTN3-211ENST00000541667 SCLT1Q96NL6 688 aa13.21□□□□□ -0.29
CLSTN3-211ENST00000541667 CDCA3Q99618 268 aaPredicted RBP13.21□□□□□ -0.29
CLSTN3-211ENST00000541667 TCF25Q9BQ70 676 aa13.21□□□□□ -0.29
CLSTN3-211ENST00000541667 EIF2AK1Q9BQI3 630 aaKnown RBP13.21□□□□□ -0.29
CLSTN3-211ENST00000541667 JPH2Q9BR39 696 aaPredicted RBP13.21□□□□□ -0.29
CLSTN3-211ENST00000541667 INO80BQ9C086 356 aaPredicted RBP13.21□□□□□ -0.29
CLSTN3-211ENST00000541667 TMEM60Q9H2L4 133 aa13.21□□□□□ -0.29
CLSTN3-211ENST00000541667 ZSWIM4Q9H7M6 989 aa13.21□□□□□ -0.29
CLSTN3-211ENST00000541667 NRDE2Q9H7Z3 1164 aa13.21□□□□□ -0.29
CLSTN3-211ENST00000541667 AGPAT5Q9NUQ2 364 aa13.21□□□□□ -0.29
CLSTN3-211ENST00000541667 A0A087WWV3 80 aa13.2□□□□□ -0.3
CLSTN3-211ENST00000541667 DCXO43602 365 aa13.2□□□□□ -0.3
CLSTN3-211ENST00000541667 GALTP07902 379 aa13.2□□□□□ -0.3
CLSTN3-211ENST00000541667 SRGAP2CP0DJJ0 459 aa13.2□□□□□ -0.3
CLSTN3-211ENST00000541667 ALADP13716 330 aa13.2□□□□□ -0.3
CLSTN3-211ENST00000541667 SFPQP23246 707 aaKnown RBP eCLIP13.2□□□□□ -0.3
CLSTN3-211ENST00000541667 ARL2P36404 184 aa13.2□□□□□ -0.3
CLSTN3-211ENST00000541667 RFC5P40937 340 aa13.2□□□□□ -0.3
CLSTN3-211ENST00000541667 CBX2Q14781 532 aaPredicted RBP13.2□□□□□ -0.3
CLSTN3-211ENST00000541667 PLPP4Q5VZY2 271 aa13.2□□□□□ -0.3
CLSTN3-211ENST00000541667 CATSPER4Q7RTX7 472 aa13.2□□□□□ -0.3
CLSTN3-211ENST00000541667 SRGAP1Q7Z6B7 1085 aa13.2□□□□□ -0.3
CLSTN3-211ENST00000541667 RNF135Q8IUD6 432 aa13.2□□□□□ -0.3
CLSTN3-211ENST00000541667 TPH2Q8IWU9 490 aa13.2□□□□□ -0.3
CLSTN3-211ENST00000541667 ABI1Q8IZP0 508 aa13.2□□□□□ -0.3
CLSTN3-211ENST00000541667 BCL7CQ8WUZ0 217 aaPredicted RBP13.2□□□□□ -0.3
CLSTN3-211ENST00000541667 SLC7A3Q8WY07 619 aa13.2□□□□□ -0.3
CLSTN3-211ENST00000541667 VN1R3Q9BXE9 311 aa13.2□□□□□ -0.3
CLSTN3-211ENST00000541667 TTC12Q9H892 705 aaPredicted RBP13.2□□□□□ -0.3
CLSTN3-211ENST00000541667 NGRNQ9NPE2 291 aaKnown RBP13.2□□□□□ -0.3
CLSTN3-211ENST00000541667 BMP2KQ9NSY1 1161 aaPredicted RBP13.2□□□□□ -0.3
CLSTN3-211ENST00000541667 TBC1D13Q9NVG8 400 aa13.2□□□□□ -0.3
CLSTN3-211ENST00000541667 PUF60Q9UHX1 559 aaKnown RBP13.2□□□□□ -0.3
CLSTN3-211ENST00000541667 PCDHA12Q9UN75 941 aa13.2□□□□□ -0.3
CLSTN3-211ENST00000541667 PIN4Q9Y237 131 aaKnown RBP13.2□□□□□ -0.3
CLSTN3-211ENST00000541667 USP15Q9Y4E8 981 aaPredicted RBP13.2□□□□□ -0.3
CLSTN3-211ENST00000541667 ARIH1Q9Y4X5 557 aaPredicted RBP13.2□□□□□ -0.3
CLSTN3-211ENST00000541667 PCDHB2Q9Y5E7 798 aa13.2□□□□□ -0.3
CLSTN3-211ENST00000541667 C2orf71A6NGG8 1288 aa13.19□□□□□ -0.3
CLSTN3-211ENST00000541667 PRR33A8MZF0 331 aa13.19□□□□□ -0.3
CLSTN3-211ENST00000541667 ASAP2O43150 1006 aa13.19□□□□□ -0.3
CLSTN3-211ENST00000541667 BAG4O95429 457 aaKnown RBP13.19□□□□□ -0.3
CLSTN3-211ENST00000541667 SPATA31C1P0DKV0 1188 aa13.19□□□□□ -0.3
CLSTN3-211ENST00000541667 POLGP54098 1239 aaPredicted RBP13.19□□□□□ -0.3
CLSTN3-211ENST00000541667 PTENP60484 403 aa13.19□□□□□ -0.3
CLSTN3-211ENST00000541667 EMC2Q15006 297 aa13.19□□□□□ -0.3
CLSTN3-211ENST00000541667 XKR9Q5GH70 373 aa13.19□□□□□ -0.3
CLSTN3-211ENST00000541667 HERC4Q5GLZ8 1057 aaPredicted RBP13.19□□□□□ -0.3
CLSTN3-211ENST00000541667 TWF2Q6IBS0 349 aaKnown RBP13.19□□□□□ -0.3
CLSTN3-211ENST00000541667 OTUD6AQ7L8S5 288 aa13.19□□□□□ -0.3
CLSTN3-211ENST00000541667 ZNF280BQ86YH2 543 aa13.19□□□□□ -0.3
CLSTN3-211ENST00000541667 IFNLR1Q8IU57 520 aaPredicted RBP13.19□□□□□ -0.3
CLSTN3-211ENST00000541667 EXOC8Q8IYI6 725 aa13.19□□□□□ -0.3
CLSTN3-211ENST00000541667 SMG8Q8ND04 991 aaKnown RBP13.19□□□□□ -0.3
CLSTN3-211ENST00000541667 PSPC1Q8WXF1 523 aaKnown RBP13.19□□□□□ -0.3
CLSTN3-211ENST00000541667 TECTAO75443 2155 aa13.18□□□□□ -0.3
CLSTN3-211ENST00000541667 MARCH6O60337 910 aa13.18□□□□□ -0.3
CLSTN3-211ENST00000541667 CLASP2O75122 1294 aaKnown RBP13.18□□□□□ -0.3
CLSTN3-211ENST00000541667 DDHD2O94830 711 aa13.18□□□□□ -0.3
CLSTN3-211ENST00000541667 SKIP12755 728 aa13.18□□□□□ -0.3
CLSTN3-211ENST00000541667 PPM1AP35813 382 aa13.18□□□□□ -0.3
CLSTN3-211ENST00000541667 TXKP42681 527 aa13.18□□□□□ -0.3
CLSTN3-211ENST00000541667 FOSBP53539 338 aa13.18□□□□□ -0.3
CLSTN3-211ENST00000541667 KRT17Q04695 432 aa13.18□□□□□ -0.3
CLSTN3-211ENST00000541667 POU5F1BQ06416 359 aa13.18□□□□□ -0.3
CLSTN3-211ENST00000541667 CALCRLQ16602 461 aa13.18□□□□□ -0.3
CLSTN3-211ENST00000541667 AMHR2Q16671 573 aa13.18□□□□□ -0.3
CLSTN3-211ENST00000541667 NOMO2Q5JPE7 1267 aa13.18□□□□□ -0.3
CLSTN3-211ENST00000541667 ANKRD54Q6NXT1 300 aa13.18□□□□□ -0.3
CLSTN3-211ENST00000541667 RNF149Q8NC42 400 aa13.18□□□□□ -0.3
CLSTN3-211ENST00000541667 ASAP3Q8TDY4 903 aa13.18□□□□□ -0.3
CLSTN3-211ENST00000541667 IGSF21Q96ID5 467 aa13.18□□□□□ -0.3
CLSTN3-211ENST00000541667 MRPL9Q9BYD2 267 aaKnown RBP13.18□□□□□ -0.3
CLSTN3-211ENST00000541667 RNF39Q9H2S5 420 aa13.18□□□□□ -0.3
CLSTN3-211ENST00000541667 ANKEF1Q9NU02 776 aa13.18□□□□□ -0.3
CLSTN3-211ENST00000541667 DNAJB4Q9UDY4 337 aa13.18□□□□□ -0.3
CLSTN3-211ENST00000541667 MUTYHQ9UIF7 546 aa13.18□□□□□ -0.3
CLSTN3-211ENST00000541667 LIMCH1Q9UPQ0 1083 aa13.18□□□□□ -0.3
CLSTN3-211ENST00000541667 GAS2O43903 313 aaKnown RBP13.17□□□□□ -0.3
CLSTN3-211ENST00000541667 NEMFO60524 1076 aa13.17□□□□□ -0.3
CLSTN3-211ENST00000541667 TSPAN1O60635 241 aa13.17□□□□□ -0.3
CLSTN3-211ENST00000541667 LILRB3O75022 631 aa13.17□□□□□ -0.3
CLSTN3-211ENST00000541667 CXCL14O95715 111 aa13.17□□□□□ -0.3
CLSTN3-211ENST00000541667 EFEMP2O95967 443 aa13.17□□□□□ -0.3
CLSTN3-211ENST00000541667 XRCC6P12956 609 aaKnown RBP eCLIP13.17□□□□□ -0.3
CLSTN3-211ENST00000541667 SLC11A1P49279 550 aa13.17□□□□□ -0.3
CLSTN3-211ENST00000541667 ALDH7A1P49419 539 aaKnown RBP13.17□□□□□ -0.3
CLSTN3-211ENST00000541667 RARRES1P49788 294 aa13.17□□□□□ -0.3
CLSTN3-211ENST00000541667 RAB27AP51159 221 aa13.17□□□□□ -0.3
CLSTN3-211ENST00000541667 GUCY1B3Q02153 619 aa13.17□□□□□ -0.3
CLSTN3-211ENST00000541667 TMC7Q7Z402 723 aa13.17□□□□□ -0.3
CLSTN3-211ENST00000541667 DDX53Q86TM3 631 aaKnown RBP13.17□□□□□ -0.3
CLSTN3-211ENST00000541667 C4orf32Q8N8J7 132 aa13.17□□□□□ -0.3
CLSTN3-211ENST00000541667 FEZF2Q8TBJ5 459 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms