RNA–Protein interactions for RNA: ENST00000540017.6

SNRPA1-203, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 1 (best)

Gene SNRPA1, Length 506 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-203ENST00000540017 RINT1Q6NUQ1 792 aa20.28■□□□□ 0.84
SNRPA1-203ENST00000540017 DAW1Q8N136 415 aa20.28■□□□□ 0.84
SNRPA1-203ENST00000540017 FBXO22Q8NEZ5 403 aa20.28■□□□□ 0.84
SNRPA1-203ENST00000540017 CLP1Q92989 425 aaKnown RBP20.28■□□□□ 0.84
SNRPA1-203ENST00000540017 CLIC6Q96NY7 704 aa20.28■□□□□ 0.84
SNRPA1-203ENST00000540017 TRAIPQ9BWF2 469 aa20.28■□□□□ 0.84
SNRPA1-203ENST00000540017 NFKBIZQ9BYH8 718 aa20.28■□□□□ 0.84
SNRPA1-203ENST00000540017 CSRNP2Q9H175 543 aa20.28■□□□□ 0.84
SNRPA1-203ENST00000540017 DACT1Q9NYF0 836 aa20.28■□□□□ 0.84
SNRPA1-203ENST00000540017 HCSTQ9UBK5 93 aa20.28■□□□□ 0.84
SNRPA1-203ENST00000540017 MTCH2Q9Y6C9 303 aa20.28■□□□□ 0.84
SNRPA1-203ENST00000540017 MYH15Q9Y2K3 1946 aa20.27■□□□□ 0.84
SNRPA1-203ENST00000540017 TBKBP1A7MCY6 615 aa20.27■□□□□ 0.84
SNRPA1-203ENST00000540017 TSPAN1O60635 241 aa20.27■□□□□ 0.84
SNRPA1-203ENST00000540017 UBA7P41226 1012 aa20.27■□□□□ 0.84
SNRPA1-203ENST00000540017 SLC39A14Q15043 492 aa20.27■□□□□ 0.84
SNRPA1-203ENST00000540017 CLLU1OSQ5K130 101 aa20.27■□□□□ 0.84
SNRPA1-203ENST00000540017 UBXN11Q5T124 520 aa20.27■□□□□ 0.84
SNRPA1-203ENST00000540017 C1orf186Q6ZWK4 172 aa20.27■□□□□ 0.84
SNRPA1-203ENST00000540017 RNF169Q8NCN4 708 aa20.27■□□□□ 0.84
SNRPA1-203ENST00000540017 EPSTI1Q96J88 318 aa20.27■□□□□ 0.84
SNRPA1-203ENST00000540017 CASD1Q96PB1 797 aa20.27■□□□□ 0.84
SNRPA1-203ENST00000540017 NT5C3AQ9H0P0 336 aa20.27■□□□□ 0.84
SNRPA1-203ENST00000540017 TFIP11Q9UBB9 837 aaKnown RBP20.27■□□□□ 0.84
SNRPA1-203ENST00000540017 SRPRBQ9Y5M8 271 aaKnown RBP20.27■□□□□ 0.84
SNRPA1-203ENST00000540017 KIAA1671Q9BY89 1806 aa20.26■□□□□ 0.83
SNRPA1-203ENST00000540017 MEIS3P2A8K0S8 358 aa20.26■□□□□ 0.83
SNRPA1-203ENST00000540017 B4GALT5O43286 388 aa20.26■□□□□ 0.83
SNRPA1-203ENST00000540017 F13A1P00488 732 aa20.26■□□□□ 0.83
SNRPA1-203ENST00000540017 POU3F3P20264 500 aaPredicted RBP20.26■□□□□ 0.83
SNRPA1-203ENST00000540017 BMPR1AP36894 532 aa20.26■□□□□ 0.83
SNRPA1-203ENST00000540017 NASPP49321 788 aaPredicted RBP20.26■□□□□ 0.83
SNRPA1-203ENST00000540017 SLC12A3P55017 1021 aa20.26■□□□□ 0.83
SNRPA1-203ENST00000540017 MAPK7Q13164 816 aa20.26■□□□□ 0.83
SNRPA1-203ENST00000540017 KARSQ15046 597 aaKnown RBP20.26■□□□□ 0.83
SNRPA1-203ENST00000540017 FOXD4L6Q3SYB3 417 aaPredicted RBP20.26■□□□□ 0.83
SNRPA1-203ENST00000540017 LONRF3Q496Y0 759 aa20.26■□□□□ 0.83
SNRPA1-203ENST00000540017 CDCA2Q69YH5 1023 aaPredicted RBP20.26■□□□□ 0.83
SNRPA1-203ENST00000540017 FOXD4L3Q6VB84 417 aaPredicted RBP20.26■□□□□ 0.83
SNRPA1-203ENST00000540017 SYT2Q8N9I0 419 aaPredicted RBP20.26■□□□□ 0.83
SNRPA1-203ENST00000540017 LPPQ93052 612 aa20.26■□□□□ 0.83
SNRPA1-203ENST00000540017 CPB2Q96IY4 423 aa20.26■□□□□ 0.83
SNRPA1-203ENST00000540017 CDK5RAP3Q96JB5 506 aa20.26■□□□□ 0.83
SNRPA1-203ENST00000540017 SAMD11Q96NU1 681 aa20.26■□□□□ 0.83
SNRPA1-203ENST00000540017 FAM105AQ9NUU6 356 aa20.26■□□□□ 0.83
SNRPA1-203ENST00000540017 RNF216Q9NWF9 866 aaPredicted RBP20.26■□□□□ 0.83
SNRPA1-203ENST00000540017 RALGAPA2Q2PPJ7 1873 aa20.26■□□□□ 0.83
SNRPA1-203ENST00000540017 TTLL13PA6NNM8 815 aa20.25■□□□□ 0.83
SNRPA1-203ENST00000540017 C5orf67F2Z3F1 127 aa20.25■□□□□ 0.83
SNRPA1-203ENST00000540017 HIP1RO75146 1068 aa20.25■□□□□ 0.83
SNRPA1-203ENST00000540017 ERLIN2O94905 339 aa20.25■□□□□ 0.83
SNRPA1-203ENST00000540017 EOMESO95936 686 aa20.25■□□□□ 0.83
SNRPA1-203ENST00000540017 PLCG1P19174 1290 aa20.25■□□□□ 0.83
SNRPA1-203ENST00000540017 CTNNB1P35222 781 aa20.25■□□□□ 0.83
SNRPA1-203ENST00000540017 CCDC85BQ15834 202 aaPredicted RBP20.25■□□□□ 0.83
SNRPA1-203ENST00000540017 LRRC55Q6ZSA7 311 aa20.25■□□□□ 0.83
SNRPA1-203ENST00000540017 LINC00301Q8NCQ3 95 aa20.25■□□□□ 0.83
SNRPA1-203ENST00000540017 PPM1EQ8WY54 764 aa20.25■□□□□ 0.83
SNRPA1-203ENST00000540017 KIFAP3Q92845 792 aa20.25■□□□□ 0.83
SNRPA1-203ENST00000540017 KIFC3Q9BVG8 833 aa20.25■□□□□ 0.83
SNRPA1-203ENST00000540017 BLOC1S4Q9NUP1 217 aa20.25■□□□□ 0.83
SNRPA1-203ENST00000540017 MORC2Q9Y6X9 1032 aaPredicted RBP20.25■□□□□ 0.83
SNRPA1-203ENST00000540017 H3BNC9 293 aa20.24■□□□□ 0.83
SNRPA1-203ENST00000540017 SLC26A4O43511 780 aa20.24■□□□□ 0.83
SNRPA1-203ENST00000540017 ZNF623O75123 536 aa20.24■□□□□ 0.83
SNRPA1-203ENST00000540017 SSBP05455 408 aaKnown RBP eCLIP20.24■□□□□ 0.83
SNRPA1-203ENST00000540017 PLA2G4BP0C869 781 aa20.24■□□□□ 0.83
SNRPA1-203ENST00000540017 ARF4P18085 180 aaPredicted RBP20.24■□□□□ 0.83
SNRPA1-203ENST00000540017 NAMPTP43490 491 aa20.24■□□□□ 0.83
SNRPA1-203ENST00000540017 RAD51AP2Q09MP3 1159 aa20.24■□□□□ 0.83
SNRPA1-203ENST00000540017 MICALL1Q8N3F8 863 aa20.24■□□□□ 0.83
SNRPA1-203ENST00000540017 KCTD17Q8N5Z5 321 aa20.24■□□□□ 0.83
SNRPA1-203ENST00000540017 HELQQ8TDG4 1101 aa20.24■□□□□ 0.83
SNRPA1-203ENST00000540017 CALML4Q96GE6 196 aa20.24■□□□□ 0.83
SNRPA1-203ENST00000540017 EIF2AQ9BY44 585 aaKnown RBP20.24■□□□□ 0.83
SNRPA1-203ENST00000540017 CCSER1Q9C0I3 900 aa20.24■□□□□ 0.83
SNRPA1-203ENST00000540017 TMEM117Q9H0C3 514 aa20.24■□□□□ 0.83
SNRPA1-203ENST00000540017 FZD8Q9H461 694 aa20.24■□□□□ 0.83
SNRPA1-203ENST00000540017 CWH43Q9H720 699 aa20.24■□□□□ 0.83
SNRPA1-203ENST00000540017 TYW1Q9NV66 732 aaKnown RBP20.24■□□□□ 0.83
SNRPA1-203ENST00000540017 USP20Q9Y2K6 914 aa20.24■□□□□ 0.83
SNRPA1-203ENST00000540017 ZDHHC9Q9Y397 364 aa20.24■□□□□ 0.83
SNRPA1-203ENST00000540017 PCDHB2Q9Y5E7 798 aa20.24■□□□□ 0.83
SNRPA1-203ENST00000540017 PRRC2BQ5JSZ5 2229 aaKnown RBP20.23■□□□□ 0.83
SNRPA1-203ENST00000540017 NPHP3-ACAD11A0A0J9YXS1 232 aa20.23■□□□□ 0.83
SNRPA1-203ENST00000540017 SFI1A8K8P3 1242 aa20.23■□□□□ 0.83
SNRPA1-203ENST00000540017 EDN1P05305 212 aa20.23■□□□□ 0.83
SNRPA1-203ENST00000540017 PDIA4P13667 645 aaKnown RBP20.23■□□□□ 0.83
SNRPA1-203ENST00000540017 GUCY2CP25092 1073 aa20.23■□□□□ 0.83
SNRPA1-203ENST00000540017 GPM6BQ13491 265 aa20.23■□□□□ 0.83
SNRPA1-203ENST00000540017 PCBP1Q15365 356 aaKnown RBP eCLIP20.23■□□□□ 0.83
SNRPA1-203ENST00000540017 ARSHQ5FYA8 562 aa20.23■□□□□ 0.83
SNRPA1-203ENST00000540017 CDR2LQ86X02 465 aaPredicted RBP20.23■□□□□ 0.83
SNRPA1-203ENST00000540017 SYMPKQ92797 1274 aaKnown RBP20.23■□□□□ 0.83
SNRPA1-203ENST00000540017 ZNF396Q96N95 335 aaPredicted RBP20.23■□□□□ 0.83
SNRPA1-203ENST00000540017 CCDC113Q9H0I3 377 aa20.23■□□□□ 0.83
SNRPA1-203ENST00000540017 HOXA2O43364 376 aa20.22■□□□□ 0.83
SNRPA1-203ENST00000540017 GTPBP6O43824 516 aaPredicted RBP20.22■□□□□ 0.83
SNRPA1-203ENST00000540017 AXLP30530 894 aa20.22■□□□□ 0.83
SNRPA1-203ENST00000540017 RAB27AP51159 221 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms