RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 DAGLAQ9Y4D2 1042 aa12.14□□□□□ -0.47
SYNE1-237ENST00000539504 SYNGAP1Q96PV0 1343 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 SPATA31C1P0DKV0 1188 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 SNHG28P0DPA3 235 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 KCNJ2P63252 427 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 PPATQ06203 517 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 COL23A1Q86Y22 540 aaPredicted RBP12.13□□□□□ -0.47
SYNE1-237ENST00000539504 CNBD1Q8NA66 436 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 GLT8D2Q9H1C3 349 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 COG5Q9UP83 839 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 MYH7BA7E2Y1 1941 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 MYH4Q9Y623 1939 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 SKAP2O75563 359 aaPredicted RBP12.13□□□□□ -0.47
SYNE1-237ENST00000539504 SUN1O94901 812 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 ANP32DO95626 131 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 GSTA1P08263 222 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 TAL1P17542 331 aaPredicted RBP12.13□□□□□ -0.47
SYNE1-237ENST00000539504 HOXA13P31271 388 aaPredicted RBP12.13□□□□□ -0.47
SYNE1-237ENST00000539504 PPP2R5AQ15172 486 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 CBWD6Q4V339 395 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 CBWD3Q5JTY5 395 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 CBWD5Q5RIA9 395 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 SAMD1Q6SPF0 538 aaPredicted RBP12.13□□□□□ -0.47
SYNE1-237ENST00000539504 PRELID2Q8N945 189 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 SLC20A1Q8WUM9 679 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 TXLNGYQ9BZA5 131 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 UBE2TQ9NPD8 197 aaPredicted RBP12.13□□□□□ -0.47
SYNE1-237ENST00000539504 USP40Q9NVE5 1235 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 ASIC3Q9UHC3 531 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 ATF5Q9Y2D1 282 aaPredicted RBP12.13□□□□□ -0.47
SYNE1-237ENST00000539504 COL22A1Q8NFW1 1626 aaPredicted RBP12.13□□□□□ -0.47
SYNE1-237ENST00000539504 RPTORQ8N122 1335 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 CFAP73A6NFT4 308 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 FAM196BA6NMK8 535 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 FOXN3O00409 490 aaPredicted RBP12.13□□□□□ -0.47
SYNE1-237ENST00000539504 PODXLO00592 558 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 SLMAPQ14BN4 828 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 EPM2AIP1Q7L775 607 aaPredicted RBP12.13□□□□□ -0.47
SYNE1-237ENST00000539504 PIGWQ7Z7B1 504 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 SLC30A5Q8TAD4 765 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 ARHGEF2Q92974 986 aaKnown RBP12.13□□□□□ -0.47
SYNE1-237ENST00000539504 HOOK2Q96ED9 719 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 ADAM7Q9H2U9 754 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 AGAP1Q9UPQ3 857 aa12.13□□□□□ -0.47
SYNE1-237ENST00000539504 NCANO14594 1321 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 IGF2BP3O00425 579 aaKnown RBP eCLIP12.12□□□□□ -0.47
SYNE1-237ENST00000539504 TGFB1I1O43294 461 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 ATMINO43313 823 aaPredicted RBP12.12□□□□□ -0.47
SYNE1-237ENST00000539504 HLA-DOAP06340 250 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 SCNN1DP51172 638 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 SNX1Q13596 522 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 CLUL1Q15846 466 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 SPDYCQ5MJ68 293 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 MAEAQ7L5Y9 396 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 RHOT2Q8IXI1 618 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 FAM178BQ8IXR5 827 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 PAIP2Q9BPZ3 127 aaKnown RBP12.12□□□□□ -0.47
SYNE1-237ENST00000539504 EIF2AK1Q9BQI3 630 aaKnown RBP12.12□□□□□ -0.47
SYNE1-237ENST00000539504 APEX2Q9UBZ4 518 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 USP15Q9Y4E8 981 aaPredicted RBP12.12□□□□□ -0.47
SYNE1-237ENST00000539504 RIPK2O43353 540 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 RPS6KA4O75676 772 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 CRYMQ14894 314 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 SLFN13Q68D06 897 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 CYP2W1Q8TAV3 490 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 AGAP11Q8TF27 550 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 PRCCQ92733 491 aaPredicted RBP12.12□□□□□ -0.47
SYNE1-237ENST00000539504 AGPAT1Q99943 283 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 GRHL1Q9NZI5 618 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 NENFQ9UMX5 172 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 SPATA31A1Q5TZJ5 1347 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 PASKQ96RG2 1323 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 IRS2Q9Y4H2 1338 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 TMEM120BA0PK00 339 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 GTPBP10A4D1E9 387 aaKnown RBP12.12□□□□□ -0.47
SYNE1-237ENST00000539504 DIAPH2O60879 1101 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 NQO1P15559 274 aaKnown RBP12.12□□□□□ -0.47
SYNE1-237ENST00000539504 VCAM1P19320 739 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 COMTP21964 271 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 VPS41P49754 854 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 AUHQ13825 339 aaKnown RBP12.12□□□□□ -0.47
SYNE1-237ENST00000539504 CNGA2Q16280 664 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 TRIM6Q9C030 488 aaPredicted RBP12.12□□□□□ -0.47
SYNE1-237ENST00000539504 SLC12A4Q9UP95 1085 aa12.12□□□□□ -0.47
SYNE1-237ENST00000539504 MIF4GDA9UHW6 222 aaKnown RBP12.11□□□□□ -0.47
SYNE1-237ENST00000539504 FAM86B1E9PN63 330 aa12.11□□□□□ -0.47
SYNE1-237ENST00000539504 SNX3O60493 162 aa12.11□□□□□ -0.47
SYNE1-237ENST00000539504 FAM86B2P0C5J1 330 aa12.11□□□□□ -0.47
SYNE1-237ENST00000539504 BCRP11274 1271 aa12.11□□□□□ -0.47
SYNE1-237ENST00000539504 HSPA6P17066 643 aa12.11□□□□□ -0.47
SYNE1-237ENST00000539504 TRIP13Q15645 432 aaPredicted RBP12.11□□□□□ -0.47
SYNE1-237ENST00000539504 TTC27Q6P3X3 843 aa12.11□□□□□ -0.47
SYNE1-237ENST00000539504 TBC1D22AQ8WUA7 517 aa12.11□□□□□ -0.47
SYNE1-237ENST00000539504 ARHGEF1Q92888 912 aaKnown RBP12.11□□□□□ -0.47
SYNE1-237ENST00000539504 RUNDC3BQ96NL0 473 aa12.11□□□□□ -0.47
SYNE1-237ENST00000539504 DDX23Q9BUQ8 820 aaKnown RBP12.11□□□□□ -0.47
SYNE1-237ENST00000539504 DDX4Q9NQI0 724 aaKnown RBP12.11□□□□□ -0.47
SYNE1-237ENST00000539504 NOP53Q9NZM5 478 aaKnown RBP12.11□□□□□ -0.47
SYNE1-237ENST00000539504 TBK1Q9UHD2 729 aa12.11□□□□□ -0.47
SYNE1-237ENST00000539504 CCDC88AQ3V6T2 1871 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms