RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 DDX47Q9H0S4 455 aaKnown RBP4.02□□□□□ -1.77
MCF2-210ENST00000536274 LIN28AQ9H9Z2 209 aaKnown RBP4.02□□□□□ -1.77
MCF2-210ENST00000536274 GDF3Q9NR23 364 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 RMND1Q9NWS8 449 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 CYP39A1Q9NYL5 469 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 SUCLA2Q9P2R7 463 aaPredicted RBP4.02□□□□□ -1.77
MCF2-210ENST00000536274 MOSPD1Q9UJG1 213 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 WDR37Q9Y2I8 494 aa4.02□□□□□ -1.77
MCF2-210ENST00000536274 SALL1Q9NSC2 1324 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP4.01□□□□□ -1.77
MCF2-210ENST00000536274 USP1O94782 785 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 YEATS4O95619 227 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 LDHCP07864 332 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 GYS1P13807 737 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 ITGA6P23229 1130 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 TM4SF1P30408 202 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 GBP1P32455 592 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 BNIP1Q12981 228 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 RCN1Q15293 331 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 TAF7Q15545 349 aaPredicted RBP4.01□□□□□ -1.77
MCF2-210ENST00000536274 CCDC6Q16204 474 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 ANKDD1AQ495B1 522 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 SNX30Q5VWJ9 437 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 DSTYKQ6XUX3 929 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 TTLL11Q8NHH1 800 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 TEKT1Q969V4 418 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 PBXIP1Q96AQ6 731 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 HAUS1Q96CS2 278 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 CYTH2Q99418 400 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 UBAC1Q9BSL1 405 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 TLR10Q9BXR5 811 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 NDEL1Q9GZM8 345 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 ATP8A2Q9NTI2 1148 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 PIM2Q9P1W9 311 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 TMCO1Q9UM00 188 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 KCNJ14Q9UNX9 436 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 RTCBQ9Y3I0 505 aaKnown RBP4.01□□□□□ -1.77
MCF2-210ENST00000536274 MYH6P13533 1939 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 PASKQ96RG2 1323 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 KLF18A0A0U1RQI7 1052 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 WDR91A4D1P6 747 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 SIGLEC16A6NMB1 481 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 CHL1O00533 1208 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 CA12O43570 354 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 ACTN4O43707 911 aaKnown RBP4.01□□□□□ -1.77
MCF2-210ENST00000536274 ALDH1L1O75891 902 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 PENKP01210 267 aaPredicted RBP4.01□□□□□ -1.77
MCF2-210ENST00000536274 AFPP02771 609 aaKnown RBP4.01□□□□□ -1.77
MCF2-210ENST00000536274 LYNP07948 512 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 PDGFRBP09619 1106 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 PCSK6P29122 969 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 IL13P35225 146 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 PMS1P54277 932 aaKnown RBP4.01□□□□□ -1.77
MCF2-210ENST00000536274 EHHADHQ08426 723 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 PPP2R5CQ13362 524 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 MTMR2Q13614 643 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 TRIM29Q14134 588 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 PPP2R5BQ15173 497 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 TTF1Q15361 905 aaPredicted RBP4.01□□□□□ -1.77
MCF2-210ENST00000536274 WDR72Q3MJ13 1102 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 SPATA1Q5VX52 437 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 RRAGBQ5VZM2 374 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 OGFOD1Q8N543 542 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 NBPF15Q8N660 670 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 ARFGAP2Q8N6H7 521 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 LINC00116Q8NCU8 138 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 PPIL4Q8WUA2 492 aaKnown RBP eCLIP4.01□□□□□ -1.77
MCF2-210ENST00000536274 TRIM51Q9BSJ1 452 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 RAB17Q9H0T7 212 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 VCX3BQ9H321 246 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 VCX3AQ9NNX9 186 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 INTS9Q9NV88 658 aaKnown RBP4.01□□□□□ -1.77
MCF2-210ENST00000536274 TMOD3Q9NYL9 352 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 ARPP21Q9UBL0 812 aaPredicted RBP4.01□□□□□ -1.77
MCF2-210ENST00000536274 LZTS1Q9Y250 596 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 GDAQ9Y2T3 454 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 LUC7L2Q9Y383 392 aaKnown RBP4.01□□□□□ -1.77
MCF2-210ENST00000536274 NOX1Q9Y5S8 564 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 DLG5Q8TDM6 1919 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 GLTPD2A6NH11 291 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 A6NNZ2 444 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 GOLGA8BA8MQT2 603 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 KCNJ18B7U540 433 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 PDLIM1O00151 329 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 EPHB6O15197 1021 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 SNX3O60493 162 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 OPHN1O60890 802 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 ITGA4P13612 1032 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 VAV1P15498 845 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 HOXA10P31260 410 aaPredicted RBP4.01□□□□□ -1.77
MCF2-210ENST00000536274 CCNG1P51959 295 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 PHEXP78562 749 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 TBL3Q12788 808 aaKnown RBP4.01□□□□□ -1.77
MCF2-210ENST00000536274 KIF5AQ12840 1032 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 KCNJ12Q14500 433 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 CYTH1Q15438 398 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 ZYXQ15942 572 aaKnown RBP4.01□□□□□ -1.77
MCF2-210ENST00000536274 TUBB8Q3ZCM7 444 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 GALNTL6Q49A17 601 aa4.01□□□□□ -1.77
MCF2-210ENST00000536274 EMC10Q5UCC4 262 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms