RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 PCDHB7Q9Y5E2 793 aa14.39□□□□□ -0.11
VPS28-216ENST00000533806 REV3LO60673 3130 aa14.39□□□□□ -0.11
VPS28-216ENST00000533806 C5orf67F2Z3F1 127 aa14.38□□□□□ -0.11
VPS28-216ENST00000533806 TSPAN1O60635 241 aa14.38□□□□□ -0.11
VPS28-216ENST00000533806 BRD1O95696 1058 aa14.38□□□□□ -0.11
VPS28-216ENST00000533806 EOMESO95936 686 aa14.38□□□□□ -0.11
VPS28-216ENST00000533806 GUCY2CP25092 1073 aa14.38□□□□□ -0.11
VPS28-216ENST00000533806 UBA7P41226 1012 aa14.38□□□□□ -0.11
VPS28-216ENST00000533806 NAMPTP43490 491 aa14.38□□□□□ -0.11
VPS28-216ENST00000533806 GATMP50440 423 aa14.38□□□□□ -0.11
VPS28-216ENST00000533806 ARSHQ5FYA8 562 aa14.38□□□□□ -0.11
VPS28-216ENST00000533806 FIBCD1Q8N539 461 aa14.38□□□□□ -0.11
VPS28-216ENST00000533806 ARNTL2Q8WYA1 636 aa14.38□□□□□ -0.11
VPS28-216ENST00000533806 KIFAP3Q92845 792 aa14.38□□□□□ -0.11
VPS28-216ENST00000533806 PLIN2Q99541 437 aa14.38□□□□□ -0.11
VPS28-216ENST00000533806 FZD8Q9H461 694 aa14.38□□□□□ -0.11
VPS28-216ENST00000533806 POLD4Q9HCU8 107 aa14.38□□□□□ -0.11
VPS28-216ENST00000533806 PIN4Q9Y237 131 aaKnown RBP14.38□□□□□ -0.11
VPS28-216ENST00000533806 YEATS4O95619 227 aa14.37□□□□□ -0.11
VPS28-216ENST00000533806 PLA2G4BP0C869 781 aa14.37□□□□□ -0.11
VPS28-216ENST00000533806 FGFR1P11362 822 aa14.37□□□□□ -0.11
VPS28-216ENST00000533806 FOSL2P15408 326 aa14.37□□□□□ -0.11
VPS28-216ENST00000533806 AXLP30530 894 aa14.37□□□□□ -0.11
VPS28-216ENST00000533806 BMPR1AP36894 532 aa14.37□□□□□ -0.11
VPS28-216ENST00000533806 BTG3Q14201 252 aaPredicted RBP14.37□□□□□ -0.11
VPS28-216ENST00000533806 KARSQ15046 597 aaKnown RBP14.37□□□□□ -0.11
VPS28-216ENST00000533806 FAM187BQ17R55 369 aa14.37□□□□□ -0.11
VPS28-216ENST00000533806 EPC2Q52LR7 807 aa14.37□□□□□ -0.11
VPS28-216ENST00000533806 SPECC1Q5M775 1068 aa14.37□□□□□ -0.11
VPS28-216ENST00000533806 FOXD4L5Q5VV16 416 aaPredicted RBP14.37□□□□□ -0.11
VPS28-216ENST00000533806 PPP4R3CPQ6ZMV5 832 aa14.37□□□□□ -0.11
VPS28-216ENST00000533806 MRPL10Q7Z7H8 261 aaKnown RBP14.37□□□□□ -0.11
VPS28-216ENST00000533806 TMEM192Q8IY95 271 aa14.37□□□□□ -0.11
VPS28-216ENST00000533806 FOXD4L4Q8WXT5 416 aaPredicted RBP14.37□□□□□ -0.11
VPS28-216ENST00000533806 ZNF396Q96N95 335 aaPredicted RBP14.37□□□□□ -0.11
VPS28-216ENST00000533806 SAMD11Q96NU1 681 aa14.37□□□□□ -0.11
VPS28-216ENST00000533806 CASD1Q96PB1 797 aa14.37□□□□□ -0.11
VPS28-216ENST00000533806 NTPCRQ9BSD7 190 aaKnown RBP14.37□□□□□ -0.11
VPS28-216ENST00000533806 CCDC113Q9H0I3 377 aa14.37□□□□□ -0.11
VPS28-216ENST00000533806 KCND2Q9NZV8 630 aa14.37□□□□□ -0.11
VPS28-216ENST00000533806 LRFN2Q9ULH4 789 aa14.37□□□□□ -0.11
VPS28-216ENST00000533806 A0A0C4DFX4 3053 aa14.37□□□□□ -0.11
VPS28-216ENST00000533806 INO80B-WBP1J3KQ70 363 aa14.36□□□□□ -0.11
VPS28-216ENST00000533806 B4GALT5O43286 388 aa14.36□□□□□ -0.11
VPS28-216ENST00000533806 HIP1RO75146 1068 aa14.36□□□□□ -0.11
VPS28-216ENST00000533806 PPP6R2O75170 966 aa14.36□□□□□ -0.11
VPS28-216ENST00000533806 PLCG1P19174 1290 aa14.36□□□□□ -0.11
VPS28-216ENST00000533806 ZRSR1Q15695 479 aaKnown RBP14.36□□□□□ -0.11
VPS28-216ENST00000533806 CLLU1OSQ5K130 101 aa14.36□□□□□ -0.11
VPS28-216ENST00000533806 ATL3Q6DD88 541 aa14.36□□□□□ -0.11
VPS28-216ENST00000533806 LRRC55Q6ZSA7 311 aa14.36□□□□□ -0.11
VPS28-216ENST00000533806 KRI1Q8N9T8 703 aaKnown RBP14.36□□□□□ -0.11
VPS28-216ENST00000533806 SYMPKQ92797 1274 aaKnown RBP14.36□□□□□ -0.11
VPS28-216ENST00000533806 CALML4Q96GE6 196 aa14.36□□□□□ -0.11
VPS28-216ENST00000533806 GAS2L1Q99501 681 aaPredicted RBP14.36□□□□□ -0.11
VPS28-216ENST00000533806 TIPINQ9BVW5 301 aa14.36□□□□□ -0.11
VPS28-216ENST00000533806 FAM105AQ9NUU6 356 aa14.36□□□□□ -0.11
VPS28-216ENST00000533806 MTCH2Q9Y6C9 303 aa14.36□□□□□ -0.11
VPS28-216ENST00000533806 MRPL42Q9Y6G3 142 aaKnown RBP14.36□□□□□ -0.11
VPS28-216ENST00000533806 A0A1B0GUA9 196 aa14.35□□□□□ -0.11
VPS28-216ENST00000533806 LRRIQ4A6NIV6 560 aa14.35□□□□□ -0.11
VPS28-216ENST00000533806 TTLL13PA6NNM8 815 aa14.35□□□□□ -0.11
VPS28-216ENST00000533806 MEIS3P2A8K0S8 358 aa14.35□□□□□ -0.11
VPS28-216ENST00000533806 H3BNC9 293 aa14.35□□□□□ -0.11
VPS28-216ENST00000533806 SPTLC2O15270 562 aa14.35□□□□□ -0.11
VPS28-216ENST00000533806 EDN1P05305 212 aa14.35□□□□□ -0.11
VPS28-216ENST00000533806 SKIP12755 728 aa14.35□□□□□ -0.11
VPS28-216ENST00000533806 ARF4P18085 180 aaPredicted RBP14.35□□□□□ -0.11
VPS28-216ENST00000533806 DDIT3P35638 169 aa14.35□□□□□ -0.11
VPS28-216ENST00000533806 NPTX2P47972 431 aa14.35□□□□□ -0.11
VPS28-216ENST00000533806 RAB27AP51159 221 aa14.35□□□□□ -0.11
VPS28-216ENST00000533806 PPP2R5AQ15172 486 aa14.35□□□□□ -0.11
VPS28-216ENST00000533806 NAALADL2Q58DX5 795 aa14.35□□□□□ -0.11
VPS28-216ENST00000533806 AXDND1Q5T1B0 1012 aaPredicted RBP14.35□□□□□ -0.11
VPS28-216ENST00000533806 TWF2Q6IBS0 349 aaKnown RBP14.35□□□□□ -0.11
VPS28-216ENST00000533806 SMG8Q8ND04 991 aaKnown RBP14.35□□□□□ -0.11
VPS28-216ENST00000533806 FBXO22Q8NEZ5 403 aa14.35□□□□□ -0.11
VPS28-216ENST00000533806 RAD54LQ92698 747 aa14.35□□□□□ -0.11
VPS28-216ENST00000533806 CCDC51Q96ER9 411 aa14.35□□□□□ -0.11
VPS28-216ENST00000533806 CDK5RAP3Q96JB5 506 aa14.35□□□□□ -0.11
VPS28-216ENST00000533806 PRIMPOLQ96LW4 560 aa14.35□□□□□ -0.11
VPS28-216ENST00000533806 TMEM117Q9H0C3 514 aa14.35□□□□□ -0.11
VPS28-216ENST00000533806 C2orf40Q9H1Z8 148 aa14.35□□□□□ -0.11
VPS28-216ENST00000533806 CWH43Q9H720 699 aa14.35□□□□□ -0.11
VPS28-216ENST00000533806 C17orf75Q9HAS0 396 aa14.35□□□□□ -0.11
VPS28-216ENST00000533806 LMCD1Q9NZU5 365 aa14.35□□□□□ -0.11
VPS28-216ENST00000533806 ARHGAP28Q9P2N2 729 aa14.35□□□□□ -0.11
VPS28-216ENST00000533806 MTUS1Q9ULD2 1270 aa14.35□□□□□ -0.11
VPS28-216ENST00000533806 PCDHB2Q9Y5E7 798 aa14.35□□□□□ -0.11
VPS28-216ENST00000533806 A0A087X0B3 334 aa14.34□□□□□ -0.11
VPS28-216ENST00000533806 TBKBP1A7MCY6 615 aa14.34□□□□□ -0.11
VPS28-216ENST00000533806 ACKR2O00590 384 aa14.34□□□□□ -0.11
VPS28-216ENST00000533806 HOXA2O43364 376 aa14.34□□□□□ -0.11
VPS28-216ENST00000533806 ERLIN2O94905 339 aa14.34□□□□□ -0.11
VPS28-216ENST00000533806 RB1P06400 928 aa14.34□□□□□ -0.11
VPS28-216ENST00000533806 NCLP19338 710 aaKnown RBP14.34□□□□□ -0.11
VPS28-216ENST00000533806 EFNA5P52803 228 aa14.34□□□□□ -0.11
VPS28-216ENST00000533806 BECN1Q14457 450 aa14.34□□□□□ -0.11
VPS28-216ENST00000533806 MCM6Q14566 821 aa14.34□□□□□ -0.11
VPS28-216ENST00000533806 PAN2Q504Q3 1202 aaKnown RBP14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms