RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 HAUS3Q68CZ6 603 aa14.81□□□□□ -0.04
VPS28-211ENST00000530790 KCNT2Q6UVM3 1135 aa14.81□□□□□ -0.04
VPS28-211ENST00000530790 GLB1LQ6UWU2 654 aa14.81□□□□□ -0.04
VPS28-211ENST00000530790 LRRC55Q6ZSA7 311 aa14.81□□□□□ -0.04
VPS28-211ENST00000530790 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.81□□□□□ -0.04
VPS28-211ENST00000530790 MICAL1Q8TDZ2 1067 aa14.81□□□□□ -0.04
VPS28-211ENST00000530790 TMX3Q96JJ7 454 aa14.81□□□□□ -0.04
VPS28-211ENST00000530790 TBC1D32Q96NH3 1257 aa14.81□□□□□ -0.04
VPS28-211ENST00000530790 POLR3CQ9BUI4 534 aaPredicted RBP14.81□□□□□ -0.04
VPS28-211ENST00000530790 MINDY3Q9H8M7 445 aa14.81□□□□□ -0.04
VPS28-211ENST00000530790 FAM50BQ9Y247 325 aa14.81□□□□□ -0.04
VPS28-211ENST00000530790 PLXNA4Q9HCM2 1894 aa14.8□□□□□ -0.04
VPS28-211ENST00000530790 MED24O75448 989 aa14.8□□□□□ -0.04
VPS28-211ENST00000530790 SPATA31C1P0DKV0 1188 aa14.8□□□□□ -0.04
VPS28-211ENST00000530790 XRCC6P12956 609 aaKnown RBP eCLIP14.8□□□□□ -0.04
VPS28-211ENST00000530790 GTF2F1P35269 517 aaKnown RBP eCLIP14.8□□□□□ -0.04
VPS28-211ENST00000530790 PBX3P40426 434 aa14.8□□□□□ -0.04
VPS28-211ENST00000530790 PTENP60484 403 aa14.8□□□□□ -0.04
VPS28-211ENST00000530790 CAPSQ13938 189 aa14.8□□□□□ -0.04
VPS28-211ENST00000530790 NBR1Q14596 966 aa14.8□□□□□ -0.04
VPS28-211ENST00000530790 PCBP1Q15365 356 aaKnown RBP eCLIP14.8□□□□□ -0.04
VPS28-211ENST00000530790 CTC1Q2NKJ3 1217 aa14.8□□□□□ -0.04
VPS28-211ENST00000530790 POTEGQ6S5H5 508 aa14.8□□□□□ -0.04
VPS28-211ENST00000530790 ADGRD2Q7Z7M1 963 aa14.8□□□□□ -0.04
VPS28-211ENST00000530790 CATSPER3Q86XQ3 398 aa14.8□□□□□ -0.04
VPS28-211ENST00000530790 ASAP3Q8TDY4 903 aa14.8□□□□□ -0.04
VPS28-211ENST00000530790 MRPS27Q92552 414 aaKnown RBP14.8□□□□□ -0.04
VPS28-211ENST00000530790 LPPQ93052 612 aa14.8□□□□□ -0.04
VPS28-211ENST00000530790 PGBD4Q96DM1 585 aa14.8□□□□□ -0.04
VPS28-211ENST00000530790 POLR3FQ9H1D9 316 aaPredicted RBP14.8□□□□□ -0.04
VPS28-211ENST00000530790 PUF60Q9UHX1 559 aaKnown RBP14.8□□□□□ -0.04
VPS28-211ENST00000530790 LZTS1Q9Y250 596 aa14.8□□□□□ -0.04
VPS28-211ENST00000530790 PCDHB2Q9Y5E7 798 aa14.8□□□□□ -0.04
VPS28-211ENST00000530790 PCDHGC5Q9Y5F6 944 aa14.8□□□□□ -0.04
VPS28-211ENST00000530790 FSD2A1L4K1 749 aa14.79□□□□□ -0.04
VPS28-211ENST00000530790 CARNS1A5YM72 827 aa14.79□□□□□ -0.04
VPS28-211ENST00000530790 GRXCR2A6NFK2 248 aa14.79□□□□□ -0.04
VPS28-211ENST00000530790 INO80B-WBP1J3KQ70 363 aa14.79□□□□□ -0.04
VPS28-211ENST00000530790 ZNF623O75123 536 aa14.79□□□□□ -0.04
VPS28-211ENST00000530790 TBX10O75333 385 aa14.79□□□□□ -0.04
VPS28-211ENST00000530790 CD2BP2O95400 341 aaKnown RBP14.79□□□□□ -0.04
VPS28-211ENST00000530790 IL9P15248 144 aa14.79□□□□□ -0.04
VPS28-211ENST00000530790 RPA1P27694 616 aa14.79□□□□□ -0.04
VPS28-211ENST00000530790 NRIP1P48552 1158 aa14.79□□□□□ -0.04
VPS28-211ENST00000530790 NDUFV1P49821 464 aa14.79□□□□□ -0.04
VPS28-211ENST00000530790 FXR2P51116 673 aaKnown RBP eCLIP14.79□□□□□ -0.04
VPS28-211ENST00000530790 PLCB3Q01970 1234 aa14.79□□□□□ -0.04
VPS28-211ENST00000530790 KRT17Q04695 432 aa14.79□□□□□ -0.04
VPS28-211ENST00000530790 NCBP1Q09161 790 aaKnown RBP14.79□□□□□ -0.04
VPS28-211ENST00000530790 LONRF3Q496Y0 759 aa14.79□□□□□ -0.04
VPS28-211ENST00000530790 MCTP1Q6DN14 999 aa14.79□□□□□ -0.04
VPS28-211ENST00000530790 PDE12Q6L8Q7 609 aaKnown RBP14.79□□□□□ -0.04
VPS28-211ENST00000530790 MCPH1Q8NEM0 835 aa14.79□□□□□ -0.04
VPS28-211ENST00000530790 NACC1Q96RE7 527 aa14.79□□□□□ -0.04
VPS28-211ENST00000530790 RAB34Q9BZG1 259 aa14.79□□□□□ -0.04
VPS28-211ENST00000530790 ENTPD7Q9NQZ7 604 aa14.79□□□□□ -0.04
VPS28-211ENST00000530790 BRWD1Q9NSI6 2320 aa14.79□□□□□ -0.04
VPS28-211ENST00000530790 SPG21Q9NZD8 308 aa14.79□□□□□ -0.04
VPS28-211ENST00000530790 DBR1Q9UK59 544 aaKnown RBP14.79□□□□□ -0.04
VPS28-211ENST00000530790 INPP5FQ9Y2H2 1132 aa14.79□□□□□ -0.04
VPS28-211ENST00000530790 TCF20Q9UGU0 1960 aaKnown RBP14.78□□□□□ -0.04
VPS28-211ENST00000530790 CNTNAP2Q9UHC6 1331 aa14.78□□□□□ -0.04
VPS28-211ENST00000530790 A0A087WWV3 80 aa14.78□□□□□ -0.04
VPS28-211ENST00000530790 ARHGEF35A5YM69 484 aa14.78□□□□□ -0.04
VPS28-211ENST00000530790 H3BQV1 296 aa14.78□□□□□ -0.04
VPS28-211ENST00000530790 LINC01565O15544 149 aa14.78□□□□□ -0.04
VPS28-211ENST00000530790 TSPAN1O60635 241 aa14.78□□□□□ -0.04
VPS28-211ENST00000530790 ZC3H11AO75152 810 aaKnown RBP eCLIP14.78□□□□□ -0.04
VPS28-211ENST00000530790 MUTP22033 750 aa14.78□□□□□ -0.04
VPS28-211ENST00000530790 GLRA2P23416 452 aa14.78□□□□□ -0.04
VPS28-211ENST00000530790 GJB2P29033 226 aa14.78□□□□□ -0.04
VPS28-211ENST00000530790 AXLP30530 894 aa14.78□□□□□ -0.04
VPS28-211ENST00000530790 ARL2P36404 184 aa14.78□□□□□ -0.04
VPS28-211ENST00000530790 LTBRP36941 435 aa14.78□□□□□ -0.04
VPS28-211ENST00000530790 ALDH7A1P49419 539 aaKnown RBP14.78□□□□□ -0.04
VPS28-211ENST00000530790 RNASELQ05823 741 aaKnown RBP14.78□□□□□ -0.04
VPS28-211ENST00000530790 POU5F1BQ06416 359 aa14.78□□□□□ -0.04
VPS28-211ENST00000530790 CLUL1Q15846 466 aa14.78□□□□□ -0.04
VPS28-211ENST00000530790 NOMO2Q5JPE7 1267 aa14.78□□□□□ -0.04
VPS28-211ENST00000530790 PLPP4Q5VZY2 271 aa14.78□□□□□ -0.04
VPS28-211ENST00000530790 NOTUMQ6P988 496 aa14.78□□□□□ -0.04
VPS28-211ENST00000530790 RBM23Q86U06 439 aaKnown RBP14.78□□□□□ -0.04
VPS28-211ENST00000530790 IFNLR1Q8IU57 520 aaPredicted RBP14.78□□□□□ -0.04
VPS28-211ENST00000530790 EFHBQ8N7U6 833 aa14.78□□□□□ -0.04
VPS28-211ENST00000530790 URGCPQ8TCY9 931 aa14.78□□□□□ -0.04
VPS28-211ENST00000530790 CCDC51Q96ER9 411 aa14.78□□□□□ -0.04
VPS28-211ENST00000530790 TCF25Q9BQ70 676 aa14.78□□□□□ -0.04
VPS28-211ENST00000530790 NFKBIZQ9BYH8 718 aa14.78□□□□□ -0.04
VPS28-211ENST00000530790 TLE6Q9H808 572 aa14.78□□□□□ -0.04
VPS28-211ENST00000530790 BDP1A6H8Y1 2624 aa14.78□□□□□ -0.04
VPS28-211ENST00000530790 LRRIQ4A6NIV6 560 aa14.77□□□□□ -0.05
VPS28-211ENST00000530790 MEIS3P2A8K0S8 358 aa14.77□□□□□ -0.05
VPS28-211ENST00000530790 LAD1O00515 517 aa14.77□□□□□ -0.05
VPS28-211ENST00000530790 FSCN2O14926 492 aa14.77□□□□□ -0.05
VPS28-211ENST00000530790 HOXA11P31270 313 aaPredicted RBP14.77□□□□□ -0.05
VPS28-211ENST00000530790 CCT6AP40227 531 aaKnown RBP14.77□□□□□ -0.05
VPS28-211ENST00000530790 TOB1P50616 345 aaPredicted RBP14.77□□□□□ -0.05
VPS28-211ENST00000530790 BCAR1P56945 870 aa14.77□□□□□ -0.05
VPS28-211ENST00000530790 ERVFC1P60507 584 aa14.77□□□□□ -0.05
VPS28-211ENST00000530790 MBTD1Q05BQ5 628 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms