RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 PLTPP55058 493 aa15.34■□□□□ 0.05
USP48-213ENST00000529637 ABCB5Q2M3G0 1257 aa15.34■□□□□ 0.05
USP48-213ENST00000529637 ALKBH5Q6P6C2 394 aaKnown RBP15.34■□□□□ 0.05
USP48-213ENST00000529637 SPDYE1Q8NFV5 336 aaPredicted RBP15.34■□□□□ 0.05
USP48-213ENST00000529637 ZNF831Q5JPB2 1677 aa15.34■□□□□ 0.05
USP48-213ENST00000529637 FOXO6A8MYZ6 492 aa15.34■□□□□ 0.05
USP48-213ENST00000529637 MEIS2O14770 477 aa15.34■□□□□ 0.05
USP48-213ENST00000529637 CFBP00751 764 aa15.34■□□□□ 0.05
USP48-213ENST00000529637 EXOC3L4Q17RC7 722 aa15.34■□□□□ 0.05
USP48-213ENST00000529637 HHIPL2Q6UWX4 724 aa15.34■□□□□ 0.05
USP48-213ENST00000529637 EPS8L3Q8TE67 593 aaKnown RBP15.34■□□□□ 0.05
USP48-213ENST00000529637 CCDC113Q9H0I3 377 aa15.34■□□□□ 0.05
USP48-213ENST00000529637 BATF3Q9NR55 127 aa15.34■□□□□ 0.05
USP48-213ENST00000529637 AP1G2O75843 785 aa15.33■□□□□ 0.04
USP48-213ENST00000529637 PRPF4BQ13523 1007 aaKnown RBP15.33■□□□□ 0.04
USP48-213ENST00000529637 CCDC26Q8TAB7 109 aa15.33■□□□□ 0.04
USP48-213ENST00000529637 RBM46Q8TBY0 533 aaKnown RBP15.33■□□□□ 0.04
USP48-213ENST00000529637 KCTD10Q9H3F6 313 aa15.33■□□□□ 0.04
USP48-213ENST00000529637 OSGEPQ9NPF4 335 aa15.33■□□□□ 0.04
USP48-213ENST00000529637 ZDHHC18Q9NUE0 388 aa15.33■□□□□ 0.04
USP48-213ENST00000529637 DBR1Q9UK59 544 aaKnown RBP15.33■□□□□ 0.04
USP48-213ENST00000529637 SNX24Q9Y343 169 aa15.33■□□□□ 0.04
USP48-213ENST00000529637 FAM86B1E9PN63 330 aa15.33■□□□□ 0.04
USP48-213ENST00000529637 NDUFB10O96000 172 aa15.33■□□□□ 0.04
USP48-213ENST00000529637 GH2P01242 217 aa15.33■□□□□ 0.04
USP48-213ENST00000529637 FAM86B2P0C5J1 330 aa15.33■□□□□ 0.04
USP48-213ENST00000529637 ALADP13716 330 aa15.33■□□□□ 0.04
USP48-213ENST00000529637 NPR1P16066 1061 aa15.33■□□□□ 0.04
USP48-213ENST00000529637 KNOP1Q1ED39 458 aaKnown RBP15.33■□□□□ 0.04
USP48-213ENST00000529637 TPH2Q8IWU9 490 aa15.33■□□□□ 0.04
USP48-213ENST00000529637 MGARPQ8TDB4 240 aa15.33■□□□□ 0.04
USP48-213ENST00000529637 DCAF4Q8WV16 495 aa15.33■□□□□ 0.04
USP48-213ENST00000529637 SAAL1Q96ER3 474 aa15.33■□□□□ 0.04
USP48-213ENST00000529637 SEMA4AQ9H3S1 761 aa15.33■□□□□ 0.04
USP48-213ENST00000529637 TDRD3Q9H7E2 651 aaKnown RBP15.33■□□□□ 0.04
USP48-213ENST00000529637 MLXIPLQ9NP71 852 aa15.33■□□□□ 0.04
USP48-213ENST00000529637 AJAP1Q9UKB5 411 aaPredicted RBP15.33■□□□□ 0.04
USP48-213ENST00000529637 STXBP5LQ9Y2K9 1186 aa15.33■□□□□ 0.04
USP48-213ENST00000529637 CCDC188H7C350 402 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 BRD2P25440 801 aaKnown RBP15.32■□□□□ 0.04
USP48-213ENST00000529637 ALDH1B1P30837 517 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 SLC12A3P55017 1021 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 GIT2Q14161 759 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 CTTNQ14247 550 aaKnown RBP15.32■□□□□ 0.04
USP48-213ENST00000529637 DCAF12L1Q5VU92 463 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 RASGEF1CQ8N431 466 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 FBXO25Q8TCJ0 367 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 P2RX7Q99572 595 aaKnown RBP15.32■□□□□ 0.04
USP48-213ENST00000529637 SPATS2LQ9NUQ6 558 aaKnown RBP15.32■□□□□ 0.04
USP48-213ENST00000529637 AFPP02771 609 aaKnown RBP15.32■□□□□ 0.04
USP48-213ENST00000529637 MMP10P09238 476 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 CREB1P16220 341 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 CASP4P49662 377 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 PMS2P54278 862 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 ZNF211Q13398 564 aaPredicted RBP15.32■□□□□ 0.04
USP48-213ENST00000529637 SYDE2Q5VT97 1194 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 AADACL2Q6P093 401 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 TRMT1LQ7Z2T5 733 aaKnown RBP15.32■□□□□ 0.04
USP48-213ENST00000529637 NT5DC3Q86UY8 548 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 SLITRK6Q9H5Y7 841 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 PCDHA2Q9Y5H9 948 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 CFAP73A6NFT4 308 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 CALUO43852 315 aaPredicted RBP15.32■□□□□ 0.04
USP48-213ENST00000529637 SNX3O60493 162 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 FAM13AO94988 1023 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 LINGO3P0C6S8 592 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 KCNA1Q09470 495 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 AP3B2Q13367 1082 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 SNX1Q13596 522 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 ZYXQ15942 572 aaKnown RBP15.32■□□□□ 0.04
USP48-213ENST00000529637 ANKRD20A2Q5SQ80 823 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 HYIQ5T013 277 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 ANKRD20A1Q5TYW2 823 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 ANKRD20A3Q5VUR7 823 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 IKZF4Q9H2S9 585 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 FAM114A2Q9NRY5 505 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 SEPT11Q9NVA2 429 aaKnown RBP15.32■□□□□ 0.04
USP48-213ENST00000529637 FGFR1OP2Q9NVK5 253 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 RABGAP1Q9Y3P9 1069 aa15.32■□□□□ 0.04
USP48-213ENST00000529637 RGS16O15492 202 aaPredicted RBP15.31■□□□□ 0.04
USP48-213ENST00000529637 PLS1Q14651 629 aa15.31■□□□□ 0.04
USP48-213ENST00000529637 DPY19L2P1Q6NXN4 242 aa15.31■□□□□ 0.04
USP48-213ENST00000529637 GJB7Q6PEY0 223 aa15.31■□□□□ 0.04
USP48-213ENST00000529637 CCDC174Q6PII3 467 aa15.31■□□□□ 0.04
USP48-213ENST00000529637 MYCT1Q8N699 235 aa15.31■□□□□ 0.04
USP48-213ENST00000529637 KLHL29Q96CT2 875 aa15.31■□□□□ 0.04
USP48-213ENST00000529637 PABPC3Q9H361 631 aaKnown RBP15.31■□□□□ 0.04
USP48-213ENST00000529637 NYAP2Q9P242 653 aa15.31■□□□□ 0.04
USP48-213ENST00000529637 PPP1R9AQ9ULJ8 1098 aa15.31■□□□□ 0.04
USP48-213ENST00000529637 MYO3BQ8WXR4 1341 aa15.31■□□□□ 0.04
USP48-213ENST00000529637 EVI5O60447 810 aa15.31■□□□□ 0.04
USP48-213ENST00000529637 BMP3P12645 472 aa15.31■□□□□ 0.04
USP48-213ENST00000529637 UCHL3P15374 230 aa15.31■□□□□ 0.04
USP48-213ENST00000529637 EIF3BP55884 814 aaKnown RBP15.31■□□□□ 0.04
USP48-213ENST00000529637 HOOK3Q86VS8 718 aa15.31■□□□□ 0.04
USP48-213ENST00000529637 RUSC1Q9BVN2 902 aa15.31■□□□□ 0.04
USP48-213ENST00000529637 ADAM22Q9P0K1 906 aa15.31■□□□□ 0.04
USP48-213ENST00000529637 FAM198AQ9UFP1 575 aa15.31■□□□□ 0.04
USP48-213ENST00000529637 BTNL10A8MVZ5 291 aa15.3■□□□□ 0.04
USP48-213ENST00000529637 AKAP3O75969 853 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms