RNA–Protein interactions for RNA: ENST00000527253.2

PRPF40B-204, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 742 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-204ENST00000527253 ARL2P36404 184 aa11.64□□□□□ -0.55
PRPF40B-204ENST00000527253 NRIP1P48552 1158 aa11.64□□□□□ -0.55
PRPF40B-204ENST00000527253 RARRES1P49788 294 aa11.64□□□□□ -0.55
PRPF40B-204ENST00000527253 TOB1P50616 345 aaPredicted RBP11.64□□□□□ -0.55
PRPF40B-204ENST00000527253 AFF1P51825 1210 aaKnown RBP11.64□□□□□ -0.55
PRPF40B-204ENST00000527253 PLCB3Q01970 1234 aa11.64□□□□□ -0.55
PRPF40B-204ENST00000527253 UBE3AQ05086 875 aa11.64□□□□□ -0.55
PRPF40B-204ENST00000527253 SAFBQ15424 915 aaKnown RBP eCLIP11.64□□□□□ -0.55
PRPF40B-204ENST00000527253 TWF2Q6IBS0 349 aaKnown RBP11.64□□□□□ -0.55
PRPF40B-204ENST00000527253 SRGAP1Q7Z6B7 1085 aa11.64□□□□□ -0.55
PRPF40B-204ENST00000527253 CATSPER3Q86XQ3 398 aa11.64□□□□□ -0.55
PRPF40B-204ENST00000527253 SLC39A11Q8N1S5 342 aa11.64□□□□□ -0.55
PRPF40B-204ENST00000527253 LRRC43Q8N309 656 aa11.64□□□□□ -0.55
PRPF40B-204ENST00000527253 EFHBQ8N7U6 833 aa11.64□□□□□ -0.55
PRPF40B-204ENST00000527253 RNF149Q8NC42 400 aa11.64□□□□□ -0.55
PRPF40B-204ENST00000527253 MRPS27Q92552 414 aaKnown RBP11.64□□□□□ -0.55
PRPF40B-204ENST00000527253 MTRQ99707 1265 aa11.64□□□□□ -0.55
PRPF40B-204ENST00000527253 TLR9Q9NR96 1032 aa11.64□□□□□ -0.55
PRPF40B-204ENST00000527253 ANKEF1Q9NU02 776 aa11.64□□□□□ -0.55
PRPF40B-204ENST00000527253 AGPAT5Q9NUQ2 364 aa11.64□□□□□ -0.55
PRPF40B-204ENST00000527253 FAM105AQ9NUU6 356 aa11.64□□□□□ -0.55
PRPF40B-204ENST00000527253 ARID2Q68CP9 1835 aa11.64□□□□□ -0.55
PRPF40B-204ENST00000527253 NT5C1B-RDH14C9J2C7 533 aa11.63□□□□□ -0.55
PRPF40B-204ENST00000527253 ASAP2O43150 1006 aa11.63□□□□□ -0.55
PRPF40B-204ENST00000527253 MBTPS2O43462 519 aa11.63□□□□□ -0.55
PRPF40B-204ENST00000527253 GLRA2P23416 452 aa11.63□□□□□ -0.55
PRPF40B-204ENST00000527253 U2AF2P26368 475 aaKnown RBP eCLIP11.63□□□□□ -0.55
PRPF40B-204ENST00000527253 TECP42680 631 aa11.63□□□□□ -0.55
PRPF40B-204ENST00000527253 PTENP60484 403 aa11.63□□□□□ -0.55
PRPF40B-204ENST00000527253 HMGN5P82970 282 aaKnown RBP11.63□□□□□ -0.55
PRPF40B-204ENST00000527253 CAPSQ13938 189 aa11.63□□□□□ -0.55
PRPF40B-204ENST00000527253 RABEP1Q15276 862 aa11.63□□□□□ -0.55
PRPF40B-204ENST00000527253 ECM1Q16610 540 aa11.63□□□□□ -0.55
PRPF40B-204ENST00000527253 PUS10Q3MIT2 529 aaKnown RBP11.63□□□□□ -0.55
PRPF40B-204ENST00000527253 TTC38Q5R3I4 469 aa11.63□□□□□ -0.55
PRPF40B-204ENST00000527253 AGMOQ6ZNB7 445 aa11.63□□□□□ -0.55
PRPF40B-204ENST00000527253 MRPL10Q7Z7H8 261 aaKnown RBP11.63□□□□□ -0.55
PRPF40B-204ENST00000527253 TMEM173Q86WV6 379 aaPredicted RBP11.63□□□□□ -0.55
PRPF40B-204ENST00000527253 NOSTRINQ8IVI9 506 aa11.63□□□□□ -0.55
PRPF40B-204ENST00000527253 EXOC8Q8IYI6 725 aa11.63□□□□□ -0.55
PRPF40B-204ENST00000527253 ABI1Q8IZP0 508 aa11.63□□□□□ -0.55
PRPF40B-204ENST00000527253 FAM184AQ8NB25 1140 aa11.63□□□□□ -0.55
PRPF40B-204ENST00000527253 MICAL1Q8TDZ2 1067 aa11.63□□□□□ -0.55
PRPF40B-204ENST00000527253 BCL7CQ8WUZ0 217 aaPredicted RBP11.63□□□□□ -0.55
PRPF40B-204ENST00000527253 TCP11Q8WWU5 503 aa11.63□□□□□ -0.55
PRPF40B-204ENST00000527253 MSLNLQ96KJ4 702 aa11.63□□□□□ -0.55
PRPF40B-204ENST00000527253 ZNF558Q96NG5 402 aa11.63□□□□□ -0.55
PRPF40B-204ENST00000527253 LZTS1Q9Y250 596 aa11.63□□□□□ -0.55
PRPF40B-204ENST00000527253 PCDHB2Q9Y5E7 798 aa11.63□□□□□ -0.55
PRPF40B-204ENST00000527253 C19orf67A6NJJ6 358 aa11.62□□□□□ -0.55
PRPF40B-204ENST00000527253 HIDE1A8MVS5 230 aa11.62□□□□□ -0.55
PRPF40B-204ENST00000527253 GAS2O43903 313 aaKnown RBP11.62□□□□□ -0.55
PRPF40B-204ENST00000527253 TSPAN1O60635 241 aa11.62□□□□□ -0.55
PRPF40B-204ENST00000527253 DGAT1O75907 488 aa11.62□□□□□ -0.55
PRPF40B-204ENST00000527253 OR52Z1P0C646 297 aa11.62□□□□□ -0.55
PRPF40B-204ENST00000527253 XRCC6P12956 609 aaKnown RBP eCLIP11.62□□□□□ -0.55
PRPF40B-204ENST00000527253 BCAR1P56945 870 aa11.62□□□□□ -0.55
PRPF40B-204ENST00000527253 KCNC3Q14003 757 aa11.62□□□□□ -0.55
PRPF40B-204ENST00000527253 AMHR2Q16671 573 aa11.62□□□□□ -0.55
PRPF40B-204ENST00000527253 DUSP6Q16828 381 aa11.62□□□□□ -0.55
PRPF40B-204ENST00000527253 CSPP1Q1MSJ5 1256 aa11.62□□□□□ -0.55
PRPF40B-204ENST00000527253 PLPP4Q5VZY2 271 aa11.62□□□□□ -0.55
PRPF40B-204ENST00000527253 IFNLR1Q8IU57 520 aaPredicted RBP11.62□□□□□ -0.55
PRPF40B-204ENST00000527253 GJD3Q8N144 294 aa11.62□□□□□ -0.55
PRPF40B-204ENST00000527253 POLR3CQ9BUI4 534 aaPredicted RBP11.62□□□□□ -0.55
PRPF40B-204ENST00000527253 EIF2AQ9BY44 585 aaKnown RBP11.62□□□□□ -0.55
PRPF40B-204ENST00000527253 RNF39Q9H2S5 420 aa11.62□□□□□ -0.55
PRPF40B-204ENST00000527253 NRDE2Q9H7Z3 1164 aa11.62□□□□□ -0.55
PRPF40B-204ENST00000527253 TLE6Q9H808 572 aa11.62□□□□□ -0.55
PRPF40B-204ENST00000527253 GPRC5CQ9NQ84 441 aa11.62□□□□□ -0.55
PRPF40B-204ENST00000527253 TBC1D13Q9NVG8 400 aa11.62□□□□□ -0.55
PRPF40B-204ENST00000527253 SPG21Q9NZD8 308 aa11.62□□□□□ -0.55
PRPF40B-204ENST00000527253 CD207Q9UJ71 328 aa11.62□□□□□ -0.55
PRPF40B-204ENST00000527253 BARX2Q9UMQ3 279 aaPredicted RBP11.62□□□□□ -0.55
PRPF40B-204ENST00000527253 USO1O60763 962 aaKnown RBP11.61□□□□□ -0.55
PRPF40B-204ENST00000527253 EYA4O95677 639 aa11.61□□□□□ -0.55
PRPF40B-204ENST00000527253 SKIP12755 728 aa11.61□□□□□ -0.55
PRPF40B-204ENST00000527253 NDUFV1P49821 464 aa11.61□□□□□ -0.55
PRPF40B-204ENST00000527253 RAB27AP51159 221 aa11.61□□□□□ -0.55
PRPF40B-204ENST00000527253 ZP2Q05996 745 aa11.61□□□□□ -0.55
PRPF40B-204ENST00000527253 MBTD1Q05BQ5 628 aa11.61□□□□□ -0.55
PRPF40B-204ENST00000527253 COASYQ13057 564 aa11.61□□□□□ -0.55
PRPF40B-204ENST00000527253 ORC2Q13416 577 aaPredicted RBP11.61□□□□□ -0.55
PRPF40B-204ENST00000527253 MXD4Q14582 209 aaPredicted RBP11.61□□□□□ -0.55
PRPF40B-204ENST00000527253 SMAD2Q15796 467 aaKnown RBP11.61□□□□□ -0.55
PRPF40B-204ENST00000527253 IL17AQ16552 155 aa11.61□□□□□ -0.55
PRPF40B-204ENST00000527253 NOMO2Q5JPE7 1267 aa11.61□□□□□ -0.55
PRPF40B-204ENST00000527253 POTEGQ6S5H5 508 aa11.61□□□□□ -0.55
PRPF40B-204ENST00000527253 MAEAQ7L5Y9 396 aa11.61□□□□□ -0.55
PRPF40B-204ENST00000527253 ZNF280BQ86YH2 543 aa11.61□□□□□ -0.55
PRPF40B-204ENST00000527253 SMG8Q8ND04 991 aaKnown RBP11.61□□□□□ -0.55
PRPF40B-204ENST00000527253 CPB2Q96IY4 423 aa11.61□□□□□ -0.55
PRPF40B-204ENST00000527253 TMX3Q96JJ7 454 aa11.61□□□□□ -0.55
PRPF40B-204ENST00000527253 TCF25Q9BQ70 676 aa11.61□□□□□ -0.55
PRPF40B-204ENST00000527253 VN1R3Q9BXE9 311 aa11.61□□□□□ -0.55
PRPF40B-204ENST00000527253 POLR3FQ9H1D9 316 aaPredicted RBP11.61□□□□□ -0.55
PRPF40B-204ENST00000527253 TUFT1Q9NNX1 390 aa11.61□□□□□ -0.55
PRPF40B-204ENST00000527253 C11orf16Q9NQ32 467 aa11.61□□□□□ -0.55
PRPF40B-204ENST00000527253 DNAJB4Q9UDY4 337 aa11.61□□□□□ -0.55
PRPF40B-204ENST00000527253 RAPGEFL1Q9UHV5 662 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms