RNA–Protein interactions for RNA: ENST00000520497.1

VAPB-206, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 937 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-206ENST00000520497 TCP11Q8WWU5 503 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 CTAGE1Q96RT6 745 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 SPC25Q9HBM1 224 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 TYW1Q9NV66 732 aaKnown RBP9.38□□□□□ -0.91
VAPB-206ENST00000520497 KCNG1Q9UIX4 513 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 PCDHB13Q9Y5F0 798 aa9.38□□□□□ -0.91
VAPB-206ENST00000520497 TANC1Q9C0D5 1861 aa9.37□□□□□ -0.91
VAPB-206ENST00000520497 H0YCG3 227 aa9.37□□□□□ -0.91
VAPB-206ENST00000520497 SMIM10L2AP0DMW4 78 aa9.37□□□□□ -0.91
VAPB-206ENST00000520497 SMIM10L2BP0DMW5 78 aa9.37□□□□□ -0.91
VAPB-206ENST00000520497 MSNP26038 577 aaKnown RBP9.37□□□□□ -0.91
VAPB-206ENST00000520497 KLRC1P26715 233 aa9.37□□□□□ -0.91
VAPB-206ENST00000520497 ABCD1P33897 745 aa9.37□□□□□ -0.91
VAPB-206ENST00000520497 CAPSQ13938 189 aa9.37□□□□□ -0.91
VAPB-206ENST00000520497 MXD4Q14582 209 aaPredicted RBP9.37□□□□□ -0.91
VAPB-206ENST00000520497 PPP2R5AQ15172 486 aa9.37□□□□□ -0.91
VAPB-206ENST00000520497 NFIL3Q16649 462 aa9.37□□□□□ -0.91
VAPB-206ENST00000520497 CDCA2Q69YH5 1023 aaPredicted RBP9.37□□□□□ -0.91
VAPB-206ENST00000520497 EFCAB12Q6NXP0 572 aa9.37□□□□□ -0.91
VAPB-206ENST00000520497 TAS1R3Q7RTX0 852 aa9.37□□□□□ -0.91
VAPB-206ENST00000520497 APTXQ7Z2E3 356 aaKnown RBP9.37□□□□□ -0.91
VAPB-206ENST00000520497 MAP4K3Q8IVH8 894 aa9.37□□□□□ -0.91
VAPB-206ENST00000520497 LRRC71Q8N4P6 559 aa9.37□□□□□ -0.91
VAPB-206ENST00000520497 CSGALNACT2Q8N6G5 542 aa9.37□□□□□ -0.91
VAPB-206ENST00000520497 RETREG2Q8NC44 543 aa9.37□□□□□ -0.91
VAPB-206ENST00000520497 TMEM174Q8WUU8 243 aa9.37□□□□□ -0.91
VAPB-206ENST00000520497 PRPF31Q8WWY3 499 aaKnown RBP9.37□□□□□ -0.91
VAPB-206ENST00000520497 PSPC1Q8WXF1 523 aaKnown RBP9.37□□□□□ -0.91
VAPB-206ENST00000520497 IFT74Q96LB3 600 aa9.37□□□□□ -0.91
VAPB-206ENST00000520497 TSG101Q99816 390 aa9.37□□□□□ -0.91
VAPB-206ENST00000520497 MTG1Q9BT17 334 aaPredicted RBP9.37□□□□□ -0.91
VAPB-206ENST00000520497 KIFC3Q9BVG8 833 aa9.37□□□□□ -0.91
VAPB-206ENST00000520497 THAP9Q9H5L6 903 aa9.37□□□□□ -0.91
VAPB-206ENST00000520497 HMX1Q9NP08 348 aaPredicted RBP9.37□□□□□ -0.91
VAPB-206ENST00000520497 KMT5AQ9NQR1 393 aa9.37□□□□□ -0.91
VAPB-206ENST00000520497 MAGEC2Q9UBF1 373 aaPredicted RBP9.37□□□□□ -0.91
VAPB-206ENST00000520497 DENND3A2RUS2 1198 aa9.36□□□□□ -0.91
VAPB-206ENST00000520497 CCDC169A6NNP5 214 aa9.36□□□□□ -0.91
VAPB-206ENST00000520497 ASAP2O43150 1006 aa9.36□□□□□ -0.91
VAPB-206ENST00000520497 ZEB2O60315 1214 aa9.36□□□□□ -0.91
VAPB-206ENST00000520497 ASGR1P07306 291 aa9.36□□□□□ -0.91
VAPB-206ENST00000520497 MNX1P50219 401 aaPredicted RBP9.36□□□□□ -0.91
VAPB-206ENST00000520497 CLCN3P51790 818 aa9.36□□□□□ -0.91
VAPB-206ENST00000520497 GSDMDP57764 484 aa9.36□□□□□ -0.91
VAPB-206ENST00000520497 IGBP1P78318 339 aa9.36□□□□□ -0.91
VAPB-206ENST00000520497 FANCCQ00597 558 aa9.36□□□□□ -0.91
VAPB-206ENST00000520497 FKBP3Q00688 224 aaKnown RBP9.36□□□□□ -0.91
VAPB-206ENST00000520497 POU5F1BQ06416 359 aa9.36□□□□□ -0.91
VAPB-206ENST00000520497 LAMTOR4Q0VGL1 99 aa9.36□□□□□ -0.91
VAPB-206ENST00000520497 HIC1Q14526 733 aa9.36□□□□□ -0.91
VAPB-206ENST00000520497 CXCL17Q6UXB2 119 aa9.36□□□□□ -0.91
VAPB-206ENST00000520497 IFNLR1Q8IU57 520 aaPredicted RBP9.36□□□□□ -0.91
VAPB-206ENST00000520497 KSR1Q8IVT5 923 aa9.36□□□□□ -0.91
VAPB-206ENST00000520497 C12orf56Q8IXR9 622 aa9.36□□□□□ -0.91
VAPB-206ENST00000520497 PCSK9Q8NBP7 692 aaKnown RBP9.36□□□□□ -0.91
VAPB-206ENST00000520497 ZBTB10Q96DT7 871 aa9.36□□□□□ -0.91
VAPB-206ENST00000520497 CEP63Q96MT8 703 aa9.36□□□□□ -0.91
VAPB-206ENST00000520497 ACCSQ96QU6 501 aa9.36□□□□□ -0.91
VAPB-206ENST00000520497 SRRTQ9BXP5 876 aaKnown RBP9.36□□□□□ -0.91
VAPB-206ENST00000520497 NFKBIZQ9BYH8 718 aa9.36□□□□□ -0.91
VAPB-206ENST00000520497 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.36□□□□□ -0.912e-9■■■■■ 28.8
VAPB-206ENST00000520497 CCDC113Q9H0I3 377 aa9.36□□□□□ -0.91
VAPB-206ENST00000520497 GBP3Q9H0R5 595 aa9.36□□□□□ -0.91
VAPB-206ENST00000520497 IKZF4Q9H2S9 585 aa9.36□□□□□ -0.91
VAPB-206ENST00000520497 TMEM206Q9H813 350 aa9.36□□□□□ -0.91
VAPB-206ENST00000520497 SUGCTQ9HAC7 445 aa9.36□□□□□ -0.91
VAPB-206ENST00000520497 PAK6Q9NQU5 681 aaPredicted RBP9.36□□□□□ -0.91
VAPB-206ENST00000520497 SETD4Q9NVD3 440 aa9.36□□□□□ -0.91
VAPB-206ENST00000520497 CGNQ9P2M7 1197 aaKnown RBP9.36□□□□□ -0.91
VAPB-206ENST00000520497 SUCLA2Q9P2R7 463 aaPredicted RBP9.36□□□□□ -0.91
VAPB-206ENST00000520497 IMPACTQ9P2X3 320 aa9.36□□□□□ -0.91
VAPB-206ENST00000520497 TBX20Q9UMR3 447 aa9.36□□□□□ -0.91
VAPB-206ENST00000520497 MKI67P46013 3256 aaKnown RBP9.36□□□□□ -0.91
VAPB-206ENST00000520497 DNAH12Q6ZR08 3092 aa9.35□□□□□ -0.91
VAPB-206ENST00000520497 PHLPP2Q6ZVD8 1323 aa9.35□□□□□ -0.91
VAPB-206ENST00000520497 SMIM35A0A1B0GVV1 85 aa9.35□□□□□ -0.91
VAPB-206ENST00000520497 LRRC10BA6NIK2 292 aa9.35□□□□□ -0.91
VAPB-206ENST00000520497 LRRIQ4A6NIV6 560 aa9.35□□□□□ -0.91
VAPB-206ENST00000520497 CALUO43852 315 aaPredicted RBP9.35□□□□□ -0.91
VAPB-206ENST00000520497 PIGRP01833 764 aa9.35□□□□□ -0.91
VAPB-206ENST00000520497 NR2F2P24468 414 aa9.35□□□□□ -0.91
VAPB-206ENST00000520497 EEF1GP26641 437 aaKnown RBP9.35□□□□□ -0.91
VAPB-206ENST00000520497 DNM2P50570 870 aa9.35□□□□□ -0.91
VAPB-206ENST00000520497 MARSP56192 900 aaKnown RBP9.35□□□□□ -0.91
VAPB-206ENST00000520497 UBASH3AP57075 661 aa9.35□□□□□ -0.91
VAPB-206ENST00000520497 SNRPFP62306 86 aaKnown RBP9.35□□□□□ -0.91
VAPB-206ENST00000520497 KRT31Q15323 416 aa9.35□□□□□ -0.91
VAPB-206ENST00000520497 KCNA10Q16322 511 aa9.35□□□□□ -0.91
VAPB-206ENST00000520497 NBPF20Q3BBV1 942 aa9.35□□□□□ -0.91
VAPB-206ENST00000520497 HSP90AA4PQ58FG1 418 aa9.35□□□□□ -0.91
VAPB-206ENST00000520497 TCP11X2Q5H9J9 407 aa9.35□□□□□ -0.91
VAPB-206ENST00000520497 NFRKBQ6P4R8 1299 aa9.35□□□□□ -0.91
VAPB-206ENST00000520497 RNF180Q86T96 592 aa9.35□□□□□ -0.91
VAPB-206ENST00000520497 SESTD1Q86VW0 696 aa9.35□□□□□ -0.91
VAPB-206ENST00000520497 SLC9A9Q8IVB4 645 aa9.35□□□□□ -0.91
VAPB-206ENST00000520497 KIAA0319LQ8IZA0 1049 aa9.35□□□□□ -0.91
VAPB-206ENST00000520497 METTL13Q8N6R0 699 aa9.35□□□□□ -0.91
VAPB-206ENST00000520497 DEPTORQ8TB45 409 aa9.35□□□□□ -0.91
VAPB-206ENST00000520497 GOLGA5Q8TBA6 731 aa9.35□□□□□ -0.91
VAPB-206ENST00000520497 CNOT6LQ96LI5 555 aaKnown RBP9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms