RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 EN1Q05925 392 aaPredicted RBP12.54□□□□□ -0.4
SYNPO-204ENST00000519664 RCN2Q14257 317 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 CCDC137Q6PK04 289 aaKnown RBP12.54□□□□□ -0.4
SYNPO-204ENST00000519664 ERICH1Q86X53 443 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 TRIM59Q8IWR1 403 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 KCTD6Q8NC69 237 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 RFFLQ8WZ73 363 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 HEXIM2Q96MH2 286 aaKnown RBP12.54□□□□□ -0.4
SYNPO-204ENST00000519664 AGBL1Q96MI9 1066 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 SAYSD1Q9NPB0 183 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 SPATA31A5Q5VU36 1347 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 SPATA31A7Q8IWB4 1347 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 WNT7AO00755 349 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 MED24O75448 989 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 BAG2O95816 211 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 H2AFXP16104 143 aaPredicted RBP12.54□□□□□ -0.4
SYNPO-204ENST00000519664 HSPA6P17066 643 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 BIRC2Q13490 618 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 SLMAPQ14BN4 828 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 SYCP2LQ5T4T6 812 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 RTKN2Q8IZC4 609 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 SCYL3Q8IZE3 742 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 CYP2W1Q8TAV3 490 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 HSPH1Q92598 858 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 ANKRD36BP1Q96IX9 119 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 CRAMP1Q96RY5 1269 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 PI4K2BG5E9Z4 385 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 PSMD14O00487 310 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 CYP11B2P19099 503 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 FGFR4P22455 802 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 CNGA1P29973 690 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 SNX16P57768 344 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 ORC2Q13416 577 aaPredicted RBP12.54□□□□□ -0.4
SYNPO-204ENST00000519664 KCTD19Q17RG1 926 aaPredicted RBP12.54□□□□□ -0.4
SYNPO-204ENST00000519664 KRT39Q6A163 491 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 KIFC3Q9BVG8 833 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 TBC1D22BQ9NU19 505 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 SSU72P8A0A1W2PR75 194 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 FMO5P49326 533 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 SEC24CP53992 1094 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 PDE1BQ01064 536 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 BAATQ14032 418 aaPredicted RBP12.54□□□□□ -0.4
SYNPO-204ENST00000519664 C2CD6Q53TS8 623 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 DARS2Q6PI48 645 aaKnown RBP12.54□□□□□ -0.4
SYNPO-204ENST00000519664 ERGIC2Q96RQ1 377 aa12.54□□□□□ -0.4
SYNPO-204ENST00000519664 F5H423 210 aaPredicted RBP12.53□□□□□ -0.4
SYNPO-204ENST00000519664 RAD51CO43502 376 aa12.53□□□□□ -0.4
SYNPO-204ENST00000519664 EPHA7Q15375 998 aa12.53□□□□□ -0.4
SYNPO-204ENST00000519664 DALRD3Q5D0E6 543 aaKnown RBP12.53□□□□□ -0.4
SYNPO-204ENST00000519664 GINM1Q9NU53 330 aa12.53□□□□□ -0.4
SYNPO-204ENST00000519664 FEM1BQ9UK73 627 aa12.53□□□□□ -0.4
SYNPO-204ENST00000519664 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.53□□□□□ -0.4
SYNPO-204ENST00000519664 PLEKHG2Q9H7P9 1386 aa12.53□□□□□ -0.4
SYNPO-204ENST00000519664 SARSP49591 514 aaKnown RBP12.53□□□□□ -0.4
SYNPO-204ENST00000519664 BBOF1Q8ND07 529 aa12.53□□□□□ -0.4
SYNPO-204ENST00000519664 SMC1BQ8NDV3 1235 aa12.53□□□□□ -0.4
SYNPO-204ENST00000519664 NLRP7Q8WX94 980 aa12.53□□□□□ -0.4
SYNPO-204ENST00000519664 ANKS1AQ92625 1134 aa12.53□□□□□ -0.4
SYNPO-204ENST00000519664 RTFDC1Q9BY42 306 aaPredicted RBP12.53□□□□□ -0.4
SYNPO-204ENST00000519664 EDEM3Q9BZQ6 932 aa12.53□□□□□ -0.4
SYNPO-204ENST00000519664 SMYD2Q9NRG4 433 aa12.53□□□□□ -0.4
SYNPO-204ENST00000519664 TCHHQ07283 1943 aa12.53□□□□□ -0.4
SYNPO-204ENST00000519664 RIMBP3CA6NJZ7 1639 aa12.53□□□□□ -0.4
SYNPO-204ENST00000519664 RIMBP3BA6NNM3 1639 aa12.53□□□□□ -0.4
SYNPO-204ENST00000519664 RIMBP3Q9UFD9 1639 aa12.53□□□□□ -0.4
SYNPO-204ENST00000519664 MIF4GDA9UHW6 222 aaKnown RBP12.53□□□□□ -0.4
SYNPO-204ENST00000519664 RPA1P27694 616 aa12.53□□□□□ -0.4
SYNPO-204ENST00000519664 YWHABP31946 246 aaKnown RBP12.53□□□□□ -0.4
SYNPO-204ENST00000519664 GBP1P32455 592 aa12.53□□□□□ -0.4
SYNPO-204ENST00000519664 PSMC6P62333 389 aa12.53□□□□□ -0.4
SYNPO-204ENST00000519664 MTMR2Q13614 643 aa12.53□□□□□ -0.4
SYNPO-204ENST00000519664 VPS72Q15906 364 aa12.53□□□□□ -0.4
SYNPO-204ENST00000519664 STRIP1Q5VSL9 837 aa12.53□□□□□ -0.4
SYNPO-204ENST00000519664 MAP7D3Q8IWC1 876 aa12.53□□□□□ -0.4
SYNPO-204ENST00000519664 FBXL16Q8N461 479 aa12.53□□□□□ -0.4
SYNPO-204ENST00000519664 DCLK2Q8N568 766 aa12.53□□□□□ -0.4
SYNPO-204ENST00000519664 NSUN6Q8TEA1 469 aaKnown RBP12.53□□□□□ -0.4
SYNPO-204ENST00000519664 ATP2A3Q93084 1043 aa12.53□□□□□ -0.4
SYNPO-204ENST00000519664 TMEM143Q96AN5 459 aa12.53□□□□□ -0.4
SYNPO-204ENST00000519664 PRMT6Q96LA8 375 aaPredicted RBP12.53□□□□□ -0.4
SYNPO-204ENST00000519664 PI4K2AQ9BTU6 479 aa12.53□□□□□ -0.4
SYNPO-204ENST00000519664 ARHGAP20Q9P2F6 1191 aa12.53□□□□□ -0.4
SYNPO-204ENST00000519664 PMS2P54278 862 aa12.52□□□□□ -0.4
SYNPO-204ENST00000519664 SUPT20HL1Q3ZLR7 823 aa12.52□□□□□ -0.4
SYNPO-204ENST00000519664 TRIM11Q96F44 468 aa12.52□□□□□ -0.4
SYNPO-204ENST00000519664 NYAP2Q9P242 653 aa12.52□□□□□ -0.4
SYNPO-204ENST00000519664 HPCAL4Q9UM19 191 aa12.52□□□□□ -0.4
SYNPO-204ENST00000519664 SSX2IPQ9Y2D8 614 aa12.52□□□□□ -0.4
SYNPO-204ENST00000519664 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.52□□□□□ -0.4
SYNPO-204ENST00000519664 SYNGAP1Q96PV0 1343 aa12.52□□□□□ -0.4
SYNPO-204ENST00000519664 NEURL4Q96JN8 1562 aa12.52□□□□□ -0.4
SYNPO-204ENST00000519664 A6NJR5 290 aa12.52□□□□□ -0.4
SYNPO-204ENST00000519664 PODXLO00592 558 aa12.52□□□□□ -0.4
SYNPO-204ENST00000519664 PSMA2P25787 234 aa12.52□□□□□ -0.4
SYNPO-204ENST00000519664 MSH2P43246 934 aa12.52□□□□□ -0.4
SYNPO-204ENST00000519664 FXR2P51116 673 aaKnown RBP eCLIP12.52□□□□□ -0.4
SYNPO-204ENST00000519664 PSMC5P62195 406 aa12.52□□□□□ -0.4
SYNPO-204ENST00000519664 LMNB2Q03252 620 aa12.52□□□□□ -0.4
SYNPO-204ENST00000519664 SLC17A8Q8NDX2 589 aa12.52□□□□□ -0.4
SYNPO-204ENST00000519664 MCPH1Q8NEM0 835 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms