RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 SPTBN4Q9H254 2564 aa6.62□□□□□ -1.35
NUP54-218ENST00000515460 A0A1W2PPC1 479 aa6.62□□□□□ -1.35
NUP54-218ENST00000515460 C22orf46C9J442 243 aa6.62□□□□□ -1.35
NUP54-218ENST00000515460 RNMTO43148 476 aaKnown RBP6.62□□□□□ -1.35
NUP54-218ENST00000515460 GJB6O95452 261 aa6.62□□□□□ -1.35
NUP54-218ENST00000515460 SCG5P05408 212 aa6.62□□□□□ -1.35
NUP54-218ENST00000515460 CYP19A1P11511 503 aaPredicted RBP6.62□□□□□ -1.35
NUP54-218ENST00000515460 ECI1P42126 302 aa6.62□□□□□ -1.35
NUP54-218ENST00000515460 KCNJ6P48051 423 aa6.62□□□□□ -1.35
NUP54-218ENST00000515460 HUNKP57058 714 aa6.62□□□□□ -1.35
NUP54-218ENST00000515460 ACBD5Q5T8D3 534 aaPredicted RBP6.62□□□□□ -1.35
NUP54-218ENST00000515460 TMED8Q6PL24 325 aaPredicted RBP6.62□□□□□ -1.35
NUP54-218ENST00000515460 ETV3LQ6ZN32 361 aa6.62□□□□□ -1.35
NUP54-218ENST00000515460 TTLL6Q8N841 843 aa6.62□□□□□ -1.35
NUP54-218ENST00000515460 MAFAQ8NHW3 353 aaPredicted RBP6.62□□□□□ -1.35
NUP54-218ENST00000515460 ADAMTS17Q8TE56 1095 aa6.62□□□□□ -1.35
NUP54-218ENST00000515460 FRS2Q8WU20 508 aa6.62□□□□□ -1.35
NUP54-218ENST00000515460 FRAT1Q92837 279 aaPredicted RBP6.62□□□□□ -1.35
NUP54-218ENST00000515460 LRFN3Q9BTN0 628 aa6.62□□□□□ -1.35
NUP54-218ENST00000515460 C11orf84Q9BUA3 381 aaPredicted RBP6.62□□□□□ -1.35
NUP54-218ENST00000515460 GLIS2Q9BZE0 524 aaPredicted RBP6.62□□□□□ -1.35
NUP54-218ENST00000515460 SLC52A2Q9HAB3 445 aa6.62□□□□□ -1.35
NUP54-218ENST00000515460 TIMM13Q9Y5L4 95 aaPredicted RBP6.62□□□□□ -1.35
NUP54-218ENST00000515460 ANKRD11Q6UB99 2663 aaPredicted RBP6.61□□□□□ -1.35
NUP54-218ENST00000515460 TTC36A6NLP5 189 aa6.61□□□□□ -1.35
NUP54-218ENST00000515460 CCER2I3L3R5 266 aa6.61□□□□□ -1.35
NUP54-218ENST00000515460 TCERG1O14776 1098 aaKnown RBP6.61□□□□□ -1.35
NUP54-218ENST00000515460 SGSM2O43147 1006 aa6.61□□□□□ -1.35
NUP54-218ENST00000515460 MTHFSDQ2M296 383 aaKnown RBP6.61□□□□□ -1.35
NUP54-218ENST00000515460 MROH9Q5TGP6 573 aa6.61□□□□□ -1.35
NUP54-218ENST00000515460 MRM1Q6IN84 353 aaKnown RBP6.61□□□□□ -1.35
NUP54-218ENST00000515460 FAM43BQ6ZT52 329 aaPredicted RBP6.61□□□□□ -1.35
NUP54-218ENST00000515460 ANKS3Q6ZW76 656 aa6.61□□□□□ -1.35
NUP54-218ENST00000515460 CERS3Q8IU89 383 aa6.61□□□□□ -1.35
NUP54-218ENST00000515460 LINC00482Q8N8I6 264 aa6.61□□□□□ -1.35
NUP54-218ENST00000515460 MICAL1Q8TDZ2 1067 aa6.61□□□□□ -1.35
NUP54-218ENST00000515460 HNRNPLLQ8WVV9 542 aaKnown RBP6.61□□□□□ -1.35
NUP54-218ENST00000515460 TMPRSS5Q9H3S3 457 aa6.61□□□□□ -1.35
NUP54-218ENST00000515460 NARFQ9UHQ1 456 aa6.61□□□□□ -1.35
NUP54-218ENST00000515460 ITGB4P16144 1822 aa6.6□□□□□ -1.35
NUP54-218ENST00000515460 SOS1Q07889 1333 aaPredicted RBP6.6□□□□□ -1.35
NUP54-218ENST00000515460 TBX1O43435 398 aa6.6□□□□□ -1.35
NUP54-218ENST00000515460 SERPINB2P05120 415 aa6.6□□□□□ -1.35
NUP54-218ENST00000515460 HMOX1P09601 288 aa6.6□□□□□ -1.35
NUP54-218ENST00000515460 EPS15P42566 896 aa6.6□□□□□ -1.35
NUP54-218ENST00000515460 MAGEA10P43363 369 aaPredicted RBP6.6□□□□□ -1.35
NUP54-218ENST00000515460 DDR2Q16832 855 aa6.6□□□□□ -1.35
NUP54-218ENST00000515460 HSP90AB3PQ58FF7 597 aa6.6□□□□□ -1.35
NUP54-218ENST00000515460 MCTP2Q6DN12 878 aa6.6□□□□□ -1.35
NUP54-218ENST00000515460 MILR1Q7Z6M3 343 aa6.6□□□□□ -1.35
NUP54-218ENST00000515460 PPIL6Q8IXY8 311 aa6.6□□□□□ -1.35
NUP54-218ENST00000515460 SEC14L1Q92503 715 aa6.6□□□□□ -1.35
NUP54-218ENST00000515460 R3HDMLQ9H3Y0 253 aa6.6□□□□□ -1.35
NUP54-218ENST00000515460 SMPD4Q9NXE4 827 aa6.6□□□□□ -1.35
NUP54-218ENST00000515460 CNOT11Q9UKZ1 510 aaKnown RBP6.6□□□□□ -1.35
NUP54-218ENST00000515460 ZBTB1Q9Y2K1 713 aa6.6□□□□□ -1.35
NUP54-218ENST00000515460 COA3Q9Y2R0 106 aaPredicted RBP6.6□□□□□ -1.35
NUP54-218ENST00000515460 KNSTRNQ9Y448 316 aa6.6□□□□□ -1.35
NUP54-218ENST00000515460 USP34Q70CQ2 3546 aa6.6□□□□□ -1.35
NUP54-218ENST00000515460 KMT2BQ9UMN6 2715 aaPredicted RBP6.6□□□□□ -1.35
NUP54-218ENST00000515460 ITGB3P05106 788 aa6.59□□□□□ -1.35
NUP54-218ENST00000515460 FPR2P25090 351 aa6.59□□□□□ -1.35
NUP54-218ENST00000515460 THBS2P35442 1172 aa6.59□□□□□ -1.35
NUP54-218ENST00000515460 LTBRP36941 435 aa6.59□□□□□ -1.35
NUP54-218ENST00000515460 STAT5AP42229 794 aa6.59□□□□□ -1.35
NUP54-218ENST00000515460 SLC6A11P48066 632 aa6.59□□□□□ -1.35
NUP54-218ENST00000515460 GFRA1P56159 465 aa6.59□□□□□ -1.35
NUP54-218ENST00000515460 TESK1Q15569 626 aa6.59□□□□□ -1.35
NUP54-218ENST00000515460 SLC10A6Q3KNW5 377 aa6.59□□□□□ -1.35
NUP54-218ENST00000515460 CEP68Q76N32 757 aa6.59□□□□□ -1.35
NUP54-218ENST00000515460 RIOX2Q8IUF8 465 aa6.59□□□□□ -1.35
NUP54-218ENST00000515460 KYQ8NBH2 561 aa6.59□□□□□ -1.35
NUP54-218ENST00000515460 TRMT2BQ96GJ1 504 aaKnown RBP6.59□□□□□ -1.35
NUP54-218ENST00000515460 PCDH18Q9HCL0 1135 aa6.59□□□□□ -1.35
NUP54-218ENST00000515460 TRIM17Q9Y577 477 aa6.59□□□□□ -1.35
NUP54-218ENST00000515460 C5orf42Q9H799 3197 aa6.59□□□□□ -1.35
NUP54-218ENST00000515460 KIF20BQ96Q89 1820 aa6.59□□□□□ -1.35
NUP54-218ENST00000515460 FER1L6Q2WGJ9 1857 aa6.58□□□□□ -1.36
NUP54-218ENST00000515460 WDFY4Q6ZS81 3184 aa6.58□□□□□ -1.36
NUP54-218ENST00000515460 DDX3XO00571 662 aaKnown RBP eCLIP6.58□□□□□ -1.363e-11■■□□□ 12
NUP54-218ENST00000515460 RPL13P26373 211 aaKnown RBP6.58□□□□□ -1.36
NUP54-218ENST00000515460 EIF5P55010 431 aaKnown RBP6.58□□□□□ -1.36
NUP54-218ENST00000515460 CYP4F3Q08477 520 aa6.58□□□□□ -1.36
NUP54-218ENST00000515460 RGMBQ6NW40 437 aa6.58□□□□□ -1.36
NUP54-218ENST00000515460 ZC3H18Q86VM9 953 aaKnown RBP6.58□□□□□ -1.36
NUP54-218ENST00000515460 EGFL6Q8IUX8 553 aa6.58□□□□□ -1.36
NUP54-218ENST00000515460 IL17REQ8NFR9 667 aa6.58□□□□□ -1.36
NUP54-218ENST00000515460 KCTD13Q8WZ19 329 aa6.58□□□□□ -1.36
NUP54-218ENST00000515460 TMEM169Q96HH4 297 aa6.58□□□□□ -1.36
NUP54-218ENST00000515460 LOXL4Q96JB6 756 aa6.58□□□□□ -1.36
NUP54-218ENST00000515460 C1QTNF1Q9BXJ1 281 aa6.58□□□□□ -1.36
NUP54-218ENST00000515460 TAOK3Q9H2K8 898 aa6.58□□□□□ -1.36
NUP54-218ENST00000515460 PRDM16Q9HAZ2 1276 aa6.58□□□□□ -1.36
NUP54-218ENST00000515460 ST7Q9NRC1 585 aa6.58□□□□□ -1.36
NUP54-218ENST00000515460 ZHX1Q9UKY1 873 aaPredicted RBP6.58□□□□□ -1.36
NUP54-218ENST00000515460 CHD6Q8TD26 2715 aa6.58□□□□□ -1.36
NUP54-218ENST00000515460 ANKRD26Q9UPS8 1709 aa6.58□□□□□ -1.36
NUP54-218ENST00000515460 FASNP49327 2511 aaKnown RBP6.57□□□□□ -1.36
NUP54-218ENST00000515460 H0YIN7 160 aa6.57□□□□□ -1.36
NUP54-218ENST00000515460 DIAPH1O60610 1272 aaKnown RBP6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms