RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 SH3RF3Q8TEJ3 882 aaPredicted RBP5.17□□□□□ -1.58
NUP54-212ENST00000513248 ZNF496Q96IT1 587 aaPredicted RBP5.17□□□□□ -1.58
NUP54-212ENST00000513248 GPR101Q96P66 508 aaPredicted RBP5.17□□□□□ -1.58
NUP54-212ENST00000513248 TTC1Q99614 292 aa5.17□□□□□ -1.58
NUP54-212ENST00000513248 RRP7BPQ9NSQ0 103 aa5.17□□□□□ -1.58
NUP54-212ENST00000513248 UCKL1Q9NWZ5 548 aa5.17□□□□□ -1.58
NUP54-212ENST00000513248 ATP8A1Q9Y2Q0 1164 aa5.17□□□□□ -1.58
NUP54-212ENST00000513248 ZDHHC9Q9Y397 364 aa5.17□□□□□ -1.58
NUP54-212ENST00000513248 REREQ9P2R6 1566 aa5.16□□□□□ -1.58
NUP54-212ENST00000513248 KIDINS220Q9ULH0 1771 aa5.16□□□□□ -1.58
NUP54-212ENST00000513248 MIA2Q96PC5 1412 aa5.16□□□□□ -1.58
NUP54-212ENST00000513248 MBD5Q9P267 1494 aa5.16□□□□□ -1.58
NUP54-212ENST00000513248 PRAMEF22A3QJZ6 481 aa5.16□□□□□ -1.58
NUP54-212ENST00000513248 PRLP01236 227 aa5.16□□□□□ -1.58
NUP54-212ENST00000513248 SLPIP03973 132 aa5.16□□□□□ -1.58
NUP54-212ENST00000513248 CSF2RBP32927 897 aa5.16□□□□□ -1.58
NUP54-212ENST00000513248 ECE1P42892 770 aa5.16□□□□□ -1.58
NUP54-212ENST00000513248 WDR72Q3MJ13 1102 aa5.16□□□□□ -1.58
NUP54-212ENST00000513248 USP51Q70EK9 711 aa5.16□□□□□ -1.58
NUP54-212ENST00000513248 SPRED1Q7Z699 444 aa5.16□□□□□ -1.58
NUP54-212ENST00000513248 RALYLQ86SE5 291 aaKnown RBP5.16□□□□□ -1.58
NUP54-212ENST00000513248 NME9Q86XW9 330 aa5.16□□□□□ -1.58
NUP54-212ENST00000513248 ZZZ3Q8IYH5 903 aa5.16□□□□□ -1.58
NUP54-212ENST00000513248 BCL6BQ8N143 479 aaPredicted RBP5.16□□□□□ -1.58
NUP54-212ENST00000513248 HIPK4Q8NE63 616 aa5.16□□□□□ -1.58
NUP54-212ENST00000513248 AJUBAQ96IF1 538 aa5.16□□□□□ -1.58
NUP54-212ENST00000513248 MAML3Q96JK9 1138 aa5.16□□□□□ -1.58
NUP54-212ENST00000513248 HAPLN2Q9GZV7 340 aa5.16□□□□□ -1.58
NUP54-212ENST00000513248 SEMA4AQ9H3S1 761 aa5.16□□□□□ -1.58
NUP54-212ENST00000513248 ST6GALNAC2Q9UJ37 374 aa5.16□□□□□ -1.58
NUP54-212ENST00000513248 APOBEC2Q9Y235 224 aaKnown RBP5.16□□□□□ -1.58
NUP54-212ENST00000513248 COL4A3BPQ9Y5P4 624 aa5.16□□□□□ -1.58
NUP54-212ENST00000513248 MAP3K1Q13233 1512 aa5.16□□□□□ -1.58
NUP54-212ENST00000513248 SIGLEC1Q9BZZ2 1709 aa5.15□□□□□ -1.58
NUP54-212ENST00000513248 ANKRD62A6NC57 917 aa5.15□□□□□ -1.59
NUP54-212ENST00000513248 CUTAO60888 179 aa5.15□□□□□ -1.59
NUP54-212ENST00000513248 CDKN1CP49918 316 aaPredicted RBP5.15□□□□□ -1.59
NUP54-212ENST00000513248 IL2P60568 153 aa5.15□□□□□ -1.59
NUP54-212ENST00000513248 ADCY1Q08828 1119 aa5.15□□□□□ -1.59
NUP54-212ENST00000513248 MYBPC3Q14896 1274 aa5.15□□□□□ -1.59
NUP54-212ENST00000513248 PTPROQ16827 1216 aa5.15□□□□□ -1.59
NUP54-212ENST00000513248 ATP13A4Q4VNC1 1196 aa5.15□□□□□ -1.59
NUP54-212ENST00000513248 GPR155Q7Z3F1 870 aa5.15□□□□□ -1.59
NUP54-212ENST00000513248 LIMS2Q7Z4I7 341 aa5.15□□□□□ -1.59
NUP54-212ENST00000513248 RPUSD2Q8IZ73 545 aaKnown RBP5.15□□□□□ -1.59
NUP54-212ENST00000513248 CLRN3Q8NCR9 226 aa5.15□□□□□ -1.59
NUP54-212ENST00000513248 DNERQ8NFT8 737 aa5.15□□□□□ -1.59
NUP54-212ENST00000513248 SLC5A5Q92911 643 aa5.15□□□□□ -1.59
NUP54-212ENST00000513248 USP7Q93009 1102 aa5.15□□□□□ -1.59
NUP54-212ENST00000513248 MENTQ9BUN1 341 aa5.15□□□□□ -1.59
NUP54-212ENST00000513248 MRIQ9BWK5 157 aa5.15□□□□□ -1.59
NUP54-212ENST00000513248 ZDHHC5Q9C0B5 715 aa5.15□□□□□ -1.59
NUP54-212ENST00000513248 KATNBL1Q9H079 304 aa5.15□□□□□ -1.59
NUP54-212ENST00000513248 KLC2Q9H0B6 622 aa5.15□□□□□ -1.59
NUP54-212ENST00000513248 OR10A5Q9H207 317 aa5.15□□□□□ -1.59
NUP54-212ENST00000513248 MS4A5Q9H3V2 200 aa5.15□□□□□ -1.59
NUP54-212ENST00000513248 PCIF1Q9H4Z3 704 aa5.15□□□□□ -1.59
NUP54-212ENST00000513248 SLITRK6Q9H5Y7 841 aa5.15□□□□□ -1.59
NUP54-212ENST00000513248 CD248Q9HCU0 757 aa5.15□□□□□ -1.59
NUP54-212ENST00000513248 TOMM22Q9NS69 142 aa5.15□□□□□ -1.59
NUP54-212ENST00000513248 PPP4R1LQ9P1A2 415 aa5.15□□□□□ -1.59
NUP54-212ENST00000513248 USP36Q9P275 1121 aaKnown RBP5.15□□□□□ -1.59
NUP54-212ENST00000513248 INO80Q9ULG1 1556 aaPredicted RBP5.15□□□□□ -1.59
NUP54-212ENST00000513248 KANK1Q14678 1352 aa5.15□□□□□ -1.59
NUP54-212ENST00000513248 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.14□□□□□ -1.59
NUP54-212ENST00000513248 ELL2O00472 640 aaPredicted RBP5.14□□□□□ -1.59
NUP54-212ENST00000513248 CD40P25942 277 aa5.14□□□□□ -1.59
NUP54-212ENST00000513248 POLD1P28340 1107 aa5.14□□□□□ -1.59
NUP54-212ENST00000513248 LSP1P33241 339 aa5.14□□□□□ -1.59
NUP54-212ENST00000513248 EPHB4P54760 987 aa5.14□□□□□ -1.59
NUP54-212ENST00000513248 TOP3AQ13472 1001 aaPredicted RBP5.14□□□□□ -1.59
NUP54-212ENST00000513248 ICAM4Q14773 271 aa5.14□□□□□ -1.59
NUP54-212ENST00000513248 BROXQ5VW32 411 aa5.14□□□□□ -1.59
NUP54-212ENST00000513248 RNF219Q5W0B1 726 aaPredicted RBP5.14□□□□□ -1.59
NUP54-212ENST00000513248 TMEM200BQ69YZ2 307 aa5.14□□□□□ -1.59
NUP54-212ENST00000513248 ARHGEF18Q6ZSZ5 1173 aa5.14□□□□□ -1.59
NUP54-212ENST00000513248 RASSF3Q86WH2 238 aa5.14□□□□□ -1.59
NUP54-212ENST00000513248 LYSMD2Q8IV50 215 aa5.14□□□□□ -1.59
NUP54-212ENST00000513248 WDR48Q8TAF3 677 aa5.14□□□□□ -1.59
NUP54-212ENST00000513248 RTF1Q92541 710 aaKnown RBP5.14□□□□□ -1.59
NUP54-212ENST00000513248 ERCC4Q92889 916 aaPredicted RBP5.14□□□□□ -1.59
NUP54-212ENST00000513248 ORAI2Q96SN7 254 aa5.14□□□□□ -1.59
NUP54-212ENST00000513248 ZNF747Q9BV97 191 aa5.14□□□□□ -1.59
NUP54-212ENST00000513248 PITHD1Q9GZP4 211 aaPredicted RBP5.14□□□□□ -1.59
NUP54-212ENST00000513248 VTA1Q9NP79 307 aa5.14□□□□□ -1.59
NUP54-212ENST00000513248 FBXO10Q9UK96 956 aa5.14□□□□□ -1.59
NUP54-212ENST00000513248 TMPRSS11EQ9UL52 423 aa5.14□□□□□ -1.59
NUP54-212ENST00000513248 ADGBQ8N7X0 1667 aa5.14□□□□□ -1.59
NUP54-212ENST00000513248 ANKRD30AQ9BXX3 1397 aa5.14□□□□□ -1.59
NUP54-212ENST00000513248 NPATQ14207 1427 aa5.14□□□□□ -1.59
NUP54-212ENST00000513248 PREX1Q8TCU6 1659 aa5.13□□□□□ -1.59
NUP54-212ENST00000513248 LCHNA4D1U4 455 aa5.13□□□□□ -1.59
NUP54-212ENST00000513248 B4GALT4O60513 344 aa5.13□□□□□ -1.59
NUP54-212ENST00000513248 ULK1O75385 1050 aa5.13□□□□□ -1.59
NUP54-212ENST00000513248 ZNF888P0CJ79 500 aaPredicted RBP5.13□□□□□ -1.59
NUP54-212ENST00000513248 CDK11BP21127 795 aaKnown RBP5.13□□□□□ -1.59
NUP54-212ENST00000513248 ADCY8P40145 1251 aa5.13□□□□□ -1.59
NUP54-212ENST00000513248 ETV4P43268 484 aa5.13□□□□□ -1.59
NUP54-212ENST00000513248 SESN3P58005 492 aa5.13□□□□□ -1.59
NUP54-212ENST00000513248 ERVK-21P61565 698 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms