RNA–Protein interactions for RNA: ENST00000507449.1

LSM6-205, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 3

Gene LSM6, Length 371 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM6-205	ENST00000507449	YTHDC1	Q96MU7	727 aa	Known RBP	4.57	□□□□□ -1.68
LSM6-205	ENST00000507449	NUP88	Q99567	741 aa	Predicted RBP	4.57	□□□□□ -1.68
LSM6-205	ENST00000507449	SPATA25	Q9BR10	227 aa		4.57	□□□□□ -1.68
LSM6-205	ENST00000507449	ACE2	Q9BYF1	805 aa	Predicted RBP	4.57	□□□□□ -1.68
LSM6-205	ENST00000507449	DMRT3	Q9NQL9	472 aa		4.57	□□□□□ -1.68
LSM6-205	ENST00000507449	POLR3B	Q9NW08	1133 aa	Predicted RBP	4.57	□□□□□ -1.68
LSM6-205	ENST00000507449		Q9UFV3	132 aa		4.57	□□□□□ -1.68
LSM6-205	ENST00000507449	DNAI1	Q9UI46	699 aa		4.57	□□□□□ -1.68
LSM6-205	ENST00000507449	PNMA8B	Q9ULN7	279 aa	Predicted RBP	4.57	□□□□□ -1.68
LSM6-205	ENST00000507449	SMG5	Q9UPR3	1016 aa	Known RBP	4.57	□□□□□ -1.68
LSM6-205	ENST00000507449	KCTD3	Q9Y597	815 aa		4.57	□□□□□ -1.68
LSM6-205	ENST00000507449	SH3D21	A4FU49	640 aa		4.56	□□□□□ -1.68
LSM6-205	ENST00000507449	IL33	O95760	270 aa		4.56	□□□□□ -1.68
LSM6-205	ENST00000507449	TSPAN15	O95858	294 aa		4.56	□□□□□ -1.68
LSM6-205	ENST00000507449	CT47B1	P0C2W7	299 aa	Predicted RBP	4.56	□□□□□ -1.68
LSM6-205	ENST00000507449	HNRNPL	P14866	589 aa	Known RBP eCLIP	4.56	□□□□□ -1.68
LSM6-205	ENST00000507449	EDNRB	P24530	442 aa		4.56	□□□□□ -1.68
LSM6-205	ENST00000507449	POLD1	P28340	1107 aa		4.56	□□□□□ -1.68
LSM6-205	ENST00000507449	KCNQ1	P51787	676 aa		4.56	□□□□□ -1.68
LSM6-205	ENST00000507449	SLC5A3	P53794	718 aa		4.56	□□□□□ -1.68
LSM6-205	ENST00000507449	ADK	P55263	362 aa	Known RBP	4.56	□□□□□ -1.68
LSM6-205	ENST00000507449	CAP1	Q01518	475 aa		4.56	□□□□□ -1.68
LSM6-205	ENST00000507449	CD69	Q07108	199 aa		4.56	□□□□□ -1.68
LSM6-205	ENST00000507449	PPP3CA	Q08209	521 aa		4.56	□□□□□ -1.68
LSM6-205	ENST00000507449	MAP3K12	Q12852	859 aa		4.56	□□□□□ -1.68
LSM6-205	ENST00000507449	ANO4	Q32M45	955 aa		4.56	□□□□□ -1.68
LSM6-205	ENST00000507449	CCDC178	Q5BJE1	867 aa		4.56	□□□□□ -1.68
LSM6-205	ENST00000507449	RRP12	Q5JTH9	1297 aa	Known RBP	4.56	□□□□□ -1.68
LSM6-205	ENST00000507449	TRIM68	Q6AZZ1	485 aa		4.56	□□□□□ -1.68
LSM6-205	ENST00000507449	CXorf57	Q6NSI4	855 aa	Known RBP	4.56	□□□□□ -1.68
LSM6-205	ENST00000507449	B3GNT9	Q6UX72	402 aa		4.56	□□□□□ -1.68
LSM6-205	ENST00000507449	NOL8	Q76FK4	1167 aa	Known RBP	4.56	□□□□□ -1.68
LSM6-205	ENST00000507449	TP53I13	Q8NBR0	393 aa	Predicted RBP	4.56	□□□□□ -1.68
LSM6-205	ENST00000507449	OR2I1P	Q8NGU4	316 aa		4.56	□□□□□ -1.68
LSM6-205	ENST00000507449	WDR48	Q8TAF3	677 aa		4.56	□□□□□ -1.68
LSM6-205	ENST00000507449	HIST1H2AH	Q96KK5	128 aa		4.56	□□□□□ -1.68
LSM6-205	ENST00000507449	HIST1H2AJ	Q99878	128 aa		4.56	□□□□□ -1.68
LSM6-205	ENST00000507449	SLC12A5	Q9H2X9	1139 aa		4.56	□□□□□ -1.68
LSM6-205	ENST00000507449	LIMCH1	Q9UPQ0	1083 aa		4.56	□□□□□ -1.68
LSM6-205	ENST00000507449		A0A1W2PR48	441 aa		4.55	□□□□□ -1.68
LSM6-205	ENST00000507449	CYP7B1	O75881	506 aa		4.55	□□□□□ -1.68
LSM6-205	ENST00000507449	LY86	O95711	162 aa		4.55	□□□□□ -1.68
LSM6-205	ENST00000507449	ATF3	P18847	181 aa		4.55	□□□□□ -1.68
LSM6-205	ENST00000507449	CYP2C19	P33261	490 aa		4.55	□□□□□ -1.68
LSM6-205	ENST00000507449	MCAM	P43121	646 aa		4.55	□□□□□ -1.68
LSM6-205	ENST00000507449	ETV4	P43268	484 aa		4.55	□□□□□ -1.68
LSM6-205	ENST00000507449	TBX4	P57082	545 aa		4.55	□□□□□ -1.68
LSM6-205	ENST00000507449	KIF23	Q02241	960 aa	Predicted RBP	4.55	□□□□□ -1.68
LSM6-205	ENST00000507449	MGAT5	Q09328	741 aa		4.55	□□□□□ -1.68
LSM6-205	ENST00000507449	MALL	Q13021	153 aa		4.55	□□□□□ -1.68
LSM6-205	ENST00000507449	ZNF267	Q14586	743 aa	Predicted RBP	4.55	□□□□□ -1.68
LSM6-205	ENST00000507449	BTNL9	Q6UXG8	535 aa		4.55	□□□□□ -1.68
LSM6-205	ENST00000507449	LCNL1	Q6ZST4	164 aa		4.55	□□□□□ -1.68
LSM6-205	ENST00000507449		Q6ZUG5	572 aa		4.55	□□□□□ -1.68
LSM6-205	ENST00000507449	CATIP	Q7Z7H3	387 aa		4.55	□□□□□ -1.68
LSM6-205	ENST00000507449	THEMIS	Q8N1K5	641 aa	Predicted RBP	4.55	□□□□□ -1.68
LSM6-205	ENST00000507449	GLB1L3	Q8NCI6	653 aa	Predicted RBP	4.55	□□□□□ -1.68
LSM6-205	ENST00000507449	PIK3C3	Q8NEB9	887 aa		4.55	□□□□□ -1.68
LSM6-205	ENST00000507449	NRG4	Q8WWG1	115 aa		4.55	□□□□□ -1.68
LSM6-205	ENST00000507449	COA7	Q96BR5	231 aa		4.55	□□□□□ -1.68
LSM6-205	ENST00000507449	AIFM3	Q96NN9	605 aa		4.55	□□□□□ -1.68
LSM6-205	ENST00000507449	GTPBP4	Q9BZE4	634 aa	Known RBP	4.55	□□□□□ -1.68
LSM6-205	ENST00000507449	KATNBL1	Q9H079	304 aa		4.55	□□□□□ -1.68
LSM6-205	ENST00000507449	SAE1	Q9UBE0	346 aa	Predicted RBP	4.55	□□□□□ -1.68
LSM6-205	ENST00000507449	GABBR1	Q9UBS5	961 aa		4.55	□□□□□ -1.68
LSM6-205	ENST00000507449	FBXO10	Q9UK96	956 aa		4.55	□□□□□ -1.68
LSM6-205	ENST00000507449	CNOT6	Q9ULM6	557 aa	Known RBP	4.55	□□□□□ -1.68
LSM6-205	ENST00000507449	PTPN22	Q9Y2R2	807 aa		4.55	□□□□□ -1.68
LSM6-205	ENST00000507449	IPP	Q9Y573	584 aa		4.55	□□□□□ -1.68
LSM6-205	ENST00000507449	TCAF2	A6NFQ2	919 aa		4.54	□□□□□ -1.68
LSM6-205	ENST00000507449	HTRA2	O43464	458 aa	Predicted RBP	4.54	□□□□□ -1.68
LSM6-205	ENST00000507449	POU2F2	P09086	479 aa		4.54	□□□□□ -1.68
LSM6-205	ENST00000507449	ZNF888	P0CJ79	500 aa	Predicted RBP	4.54	□□□□□ -1.68
LSM6-205	ENST00000507449	GAA	P10253	952 aa		4.54	□□□□□ -1.68
LSM6-205	ENST00000507449	CSF2RB	P32927	897 aa		4.54	□□□□□ -1.68
LSM6-205	ENST00000507449	LINC00310	P59036	64 aa		4.54	□□□□□ -1.68
LSM6-205	ENST00000507449	KRTAP1-1	Q07627	177 aa		4.54	□□□□□ -1.68
LSM6-205	ENST00000507449	ZNF827	Q17R98	1081 aa		4.54	□□□□□ -1.68
LSM6-205	ENST00000507449	MSL3	Q8N5Y2	521 aa	Known RBP	4.54	□□□□□ -1.68
LSM6-205	ENST00000507449	HOXB13	Q92826	284 aa	Predicted RBP	4.54	□□□□□ -1.68
LSM6-205	ENST00000507449	RELT	Q969Z4	430 aa		4.54	□□□□□ -1.68
LSM6-205	ENST00000507449	RUNDC1	Q96C34	613 aa		4.54	□□□□□ -1.68
LSM6-205	ENST00000507449	MBD6	Q96DN6	1003 aa		4.54	□□□□□ -1.68
LSM6-205	ENST00000507449	AJUBA	Q96IF1	538 aa		4.54	□□□□□ -1.68
LSM6-205	ENST00000507449	LRGUK	Q96M69	825 aa		4.54	□□□□□ -1.68
LSM6-205	ENST00000507449	WDR92	Q96MX6	357 aa		4.54	□□□□□ -1.68
LSM6-205	ENST00000507449	OSBPL6	Q9BZF3	934 aa		4.54	□□□□□ -1.68
LSM6-205	ENST00000507449	KIAA1683	Q9H0B3	1180 aa		4.54	□□□□□ -1.68
LSM6-205	ENST00000507449	L2HGDH	Q9H9P8	463 aa		4.54	□□□□□ -1.68
LSM6-205	ENST00000507449	SYNPO2	Q9UMS6	1093 aa		4.54	□□□□□ -1.68
LSM6-205	ENST00000507449	C2orf78	A6NCI8	922 aa		4.53	□□□□□ -1.68
LSM6-205	ENST00000507449	VSTM5	A8MXK1	200 aa		4.53	□□□□□ -1.68
LSM6-205	ENST00000507449	MAFG	O15525	162 aa		4.53	□□□□□ -1.68
LSM6-205	ENST00000507449	NRP2	O60462	931 aa		4.53	□□□□□ -1.68
LSM6-205	ENST00000507449	HMGCR	P04035	888 aa		4.53	□□□□□ -1.68
LSM6-205	ENST00000507449	AKAP5	P24588	427 aa		4.53	□□□□□ -1.68
LSM6-205	ENST00000507449	CTSS	P25774	331 aa		4.53	□□□□□ -1.68
LSM6-205	ENST00000507449	GNAL	P38405	381 aa		4.53	□□□□□ -1.68
LSM6-205	ENST00000507449	WAS	P42768	502 aa		4.53	□□□□□ -1.68
LSM6-205	ENST00000507449	SARS	P49591	514 aa	Known RBP	4.53	□□□□□ -1.68

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