RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 PIN4Q9Y237 131 aaKnown RBP16.55■□□□□ 0.24
TRAF4-212ENST00000498540 IGKV6-21A0A0C4DH24 114 aa16.54■□□□□ 0.24
TRAF4-212ENST00000498540 OFD1O75665 1012 aa16.54■□□□□ 0.24
TRAF4-212ENST00000498540 SFPQP23246 707 aaKnown RBP eCLIP16.54■□□□□ 0.24
TRAF4-212ENST00000498540 SLC11A1P49279 550 aa16.54■□□□□ 0.24
TRAF4-212ENST00000498540 RNASELQ05823 741 aaKnown RBP16.54■□□□□ 0.24
TRAF4-212ENST00000498540 KRT32Q14532 448 aa16.54■□□□□ 0.24
TRAF4-212ENST00000498540 Q6ZUG5 572 aa16.54■□□□□ 0.24
TRAF4-212ENST00000498540 GPR149Q86SP6 731 aa16.54■□□□□ 0.24
TRAF4-212ENST00000498540 BICD2Q8TD16 824 aa16.54■□□□□ 0.24
TRAF4-212ENST00000498540 RSPH1Q8WYR4 309 aa16.54■□□□□ 0.24
TRAF4-212ENST00000498540 BRF1Q92994 677 aa16.54■□□□□ 0.24
TRAF4-212ENST00000498540 NIFKQ9BYG3 293 aaKnown RBP16.54■□□□□ 0.24
TRAF4-212ENST00000498540 SFXN1Q9H9B4 322 aa16.54■□□□□ 0.24
TRAF4-212ENST00000498540 VPS54Q9P1Q0 977 aa16.54■□□□□ 0.24
TRAF4-212ENST00000498540 PI15O43692 258 aa16.53■□□□□ 0.24
TRAF4-212ENST00000498540 PSMD10O75832 226 aa16.53■□□□□ 0.24
TRAF4-212ENST00000498540 SSBP05455 408 aaKnown RBP eCLIP16.53■□□□□ 0.24
TRAF4-212ENST00000498540 HMGB1P09429 215 aaKnown RBP16.53■□□□□ 0.24
TRAF4-212ENST00000498540 NPR3P17342 541 aa16.53■□□□□ 0.24
TRAF4-212ENST00000498540 NTRK3Q16288 839 aa16.53■□□□□ 0.24
TRAF4-212ENST00000498540 XKR3Q5GH77 459 aa16.53■□□□□ 0.24
TRAF4-212ENST00000498540 BMP2KLQ5H9B9 411 aa16.53■□□□□ 0.24
TRAF4-212ENST00000498540 CCDC149Q6ZUS6 474 aa16.53■□□□□ 0.24
TRAF4-212ENST00000498540 MIER3Q7Z3K6 550 aa16.53■□□□□ 0.24
TRAF4-212ENST00000498540 ZNF280BQ86YH2 543 aa16.53■□□□□ 0.24
TRAF4-212ENST00000498540 RHPN2Q8IUC4 686 aa16.53■□□□□ 0.24
TRAF4-212ENST00000498540 KSR1Q8IVT5 923 aa16.53■□□□□ 0.24
TRAF4-212ENST00000498540 CCDC148Q8NFR7 591 aa16.53■□□□□ 0.24
TRAF4-212ENST00000498540 NKD2Q969F2 451 aaPredicted RBP16.53■□□□□ 0.24
TRAF4-212ENST00000498540 SUCLA2Q9P2R7 463 aaPredicted RBP16.53■□□□□ 0.24
TRAF4-212ENST00000498540 GVINP1Q7Z2Y8 2422 aa16.53■□□□□ 0.24
TRAF4-212ENST00000498540 DCHS1Q96JQ0 3298 aa16.52■□□□□ 0.24
TRAF4-212ENST00000498540 CARNS1A5YM72 827 aa16.52■□□□□ 0.24
TRAF4-212ENST00000498540 SPDYE4A6NLX3 237 aa16.52■□□□□ 0.24
TRAF4-212ENST00000498540 ZNF623O75123 536 aa16.52■□□□□ 0.24
TRAF4-212ENST00000498540 SKIP12755 728 aa16.52■□□□□ 0.24
TRAF4-212ENST00000498540 AOC1P19801 751 aa16.52■□□□□ 0.24
TRAF4-212ENST00000498540 DNM2P50570 870 aa16.52■□□□□ 0.24
TRAF4-212ENST00000498540 USP11P51784 963 aa16.52■□□□□ 0.24
TRAF4-212ENST00000498540 CLCN4P51793 760 aa16.52■□□□□ 0.24
TRAF4-212ENST00000498540 AFF1P51825 1210 aaKnown RBP16.52■□□□□ 0.24
TRAF4-212ENST00000498540 CDC42EP1Q00587 391 aa16.52■□□□□ 0.24
TRAF4-212ENST00000498540 FOXK2Q01167 660 aa16.52■□□□□ 0.24
TRAF4-212ENST00000498540 TDGQ13569 410 aa16.52■□□□□ 0.24
TRAF4-212ENST00000498540 B3GNT9Q6UX72 402 aa16.52■□□□□ 0.24
TRAF4-212ENST00000498540 CATSPER4Q7RTX7 472 aa16.52■□□□□ 0.24
TRAF4-212ENST00000498540 ZNF410Q86VK4 478 aa16.52■□□□□ 0.24
TRAF4-212ENST00000498540 PPFIBP1Q86W92 1011 aa16.52■□□□□ 0.24
TRAF4-212ENST00000498540 RDM1Q8NG50 284 aa16.52■□□□□ 0.24
TRAF4-212ENST00000498540 ACSF2Q96CM8 615 aaPredicted RBP16.52■□□□□ 0.24
TRAF4-212ENST00000498540 NLRP4Q96MN2 994 aa16.52■□□□□ 0.24
TRAF4-212ENST00000498540 KLHL5Q96PQ7 755 aa16.52■□□□□ 0.24
TRAF4-212ENST00000498540 SLC26A6Q9BXS9 759 aa16.52■□□□□ 0.24
TRAF4-212ENST00000498540 DUSP12Q9UNI6 340 aa16.52■□□□□ 0.24
TRAF4-212ENST00000498540 DDHD2O94830 711 aa16.51■□□□□ 0.23
TRAF4-212ENST00000498540 TDP2O95551 362 aa16.51■□□□□ 0.23
TRAF4-212ENST00000498540 CNPP09543 421 aaKnown RBP16.51■□□□□ 0.23
TRAF4-212ENST00000498540 KLRC2P26717 231 aa16.51■□□□□ 0.23
TRAF4-212ENST00000498540 RAB27AP51159 221 aa16.51■□□□□ 0.23
TRAF4-212ENST00000498540 AKAP17AQ02040 695 aaKnown RBP16.51■□□□□ 0.23
TRAF4-212ENST00000498540 PLA2G4FQ68DD2 849 aa16.51■□□□□ 0.23
TRAF4-212ENST00000498540 AGMOQ6ZNB7 445 aa16.51■□□□□ 0.23
TRAF4-212ENST00000498540 OTOP3Q7RTS5 596 aa16.51■□□□□ 0.23
TRAF4-212ENST00000498540 TBCKQ8TEA7 893 aa16.51■□□□□ 0.23
TRAF4-212ENST00000498540 RNF26Q9BY78 433 aaPredicted RBP16.51■□□□□ 0.23
TRAF4-212ENST00000498540 INO80BQ9C086 356 aaPredicted RBP16.51■□□□□ 0.23
TRAF4-212ENST00000498540 KCNK12Q9HB15 430 aa16.51■□□□□ 0.23
TRAF4-212ENST00000498540 PCDHB2Q9Y5E7 798 aa16.51■□□□□ 0.23
TRAF4-212ENST00000498540 LILRB3O75022 631 aa16.5■□□□□ 0.23
TRAF4-212ENST00000498540 N4BP1O75113 896 aaKnown RBP16.5■□□□□ 0.23
TRAF4-212ENST00000498540 MAFO75444 373 aaPredicted RBP16.5■□□□□ 0.23
TRAF4-212ENST00000498540 LETM2Q2VYF4 491 aa16.5■□□□□ 0.23
TRAF4-212ENST00000498540 Q4G0T1 1027 aa16.5■□□□□ 0.23
TRAF4-212ENST00000498540 ANO5Q75V66 913 aa16.5■□□□□ 0.23
TRAF4-212ENST00000498540 CCDC105Q8IYK2 499 aa16.5■□□□□ 0.23
TRAF4-212ENST00000498540 ADSSL1Q8N142 457 aa16.5■□□□□ 0.23
TRAF4-212ENST00000498540 SIX5Q8N196 739 aa16.5■□□□□ 0.23
TRAF4-212ENST00000498540 JAKMIP1Q96N16 626 aaKnown RBP16.5■□□□□ 0.23
TRAF4-212ENST00000498540 EMILIN2Q9BXX0 1053 aa16.5■□□□□ 0.23
TRAF4-212ENST00000498540 IFT122Q9HBG6 1241 aa16.5■□□□□ 0.23
TRAF4-212ENST00000498540 AGPAT5Q9NUQ2 364 aa16.5■□□□□ 0.23
TRAF4-212ENST00000498540 FBXL21Q9UKT6 434 aa16.5■□□□□ 0.23
TRAF4-212ENST00000498540 WDR87Q6ZQQ6 2873 aa16.49■□□□□ 0.23
TRAF4-212ENST00000498540 DDX11L8A8MPP1 907 aa16.49■□□□□ 0.23
TRAF4-212ENST00000498540 NARSO43776 548 aaKnown RBP16.49■□□□□ 0.23
TRAF4-212ENST00000498540 IFNAR1P17181 557 aa16.49■□□□□ 0.23
TRAF4-212ENST00000498540 ANGPT1Q15389 498 aa16.49■□□□□ 0.23
TRAF4-212ENST00000498540 C15orf39Q6ZRI6 1047 aa16.49■□□□□ 0.23
TRAF4-212ENST00000498540 ETNPPLQ8TBG4 499 aa16.49■□□□□ 0.23
TRAF4-212ENST00000498540 URGCPQ8TCY9 931 aa16.49■□□□□ 0.23
TRAF4-212ENST00000498540 PGBD4Q96DM1 585 aa16.49■□□□□ 0.23
TRAF4-212ENST00000498540 RSAD1Q9HA92 442 aa16.49■□□□□ 0.23
TRAF4-212ENST00000498540 NCOA5Q9HCD5 579 aaKnown RBP16.49■□□□□ 0.23
TRAF4-212ENST00000498540 MAN1C1Q9NR34 630 aa16.49■□□□□ 0.23
TRAF4-212ENST00000498540 CYP3A7-CYP3A51PA0A087WV96 503 aa16.48■□□□□ 0.23
TRAF4-212ENST00000498540 C2CD2LO14523 706 aa16.48■□□□□ 0.23
TRAF4-212ENST00000498540 CYP3A7P24462 503 aa16.48■□□□□ 0.23
TRAF4-212ENST00000498540 NLRP5P59047 1200 aa16.48■□□□□ 0.23
TRAF4-212ENST00000498540 BLOC1S2Q6QNY1 142 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms