RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 PTPROQ16827 1216 aa18.12■□□□□ 0.49
SF3A1-209ENST00000496189 EPC2Q52LR7 807 aa18.12■□□□□ 0.49
SF3A1-209ENST00000496189 HYIQ5T013 277 aa18.12■□□□□ 0.49
SF3A1-209ENST00000496189 NOTUMQ6P988 496 aa18.12■□□□□ 0.49
SF3A1-209ENST00000496189 ECHDC2Q86YB7 292 aa18.12■□□□□ 0.49
SF3A1-209ENST00000496189 IFNLR1Q8IU57 520 aaPredicted RBP18.12■□□□□ 0.49
SF3A1-209ENST00000496189 GDPD5Q8WTR4 605 aa18.12■□□□□ 0.49
SF3A1-209ENST00000496189 PGBD4Q96DM1 585 aa18.12■□□□□ 0.49
SF3A1-209ENST00000496189 DRC1Q96MC2 740 aa18.12■□□□□ 0.49
SF3A1-209ENST00000496189 C17orf80Q9BSJ5 609 aa18.12■□□□□ 0.49
SF3A1-209ENST00000496189 MMTAG2Q9BU76 263 aaKnown RBP18.12■□□□□ 0.49
SF3A1-209ENST00000496189 C11orf84Q9BUA3 381 aaPredicted RBP18.12■□□□□ 0.49
SF3A1-209ENST00000496189 RC3H2Q9HBD1 1191 aaKnown RBP18.12■□□□□ 0.49
SF3A1-209ENST00000496189 GPRC5CQ9NQ84 441 aa18.12■□□□□ 0.49
SF3A1-209ENST00000496189 PRMT7Q9NVM4 692 aaPredicted RBP18.12■□□□□ 0.49
SF3A1-209ENST00000496189 CCDC39Q9UFE4 941 aa18.12■□□□□ 0.49
SF3A1-209ENST00000496189 MORC2Q9Y6X9 1032 aaPredicted RBP18.12■□□□□ 0.49
SF3A1-209ENST00000496189 RBAK-RBAKDNI3L0D1 243 aa18.11■□□□□ 0.49
SF3A1-209ENST00000496189 YEATS4O95619 227 aa18.11■□□□□ 0.49
SF3A1-209ENST00000496189 MARCKSP29966 332 aaPredicted RBP18.11■□□□□ 0.49
SF3A1-209ENST00000496189 NAMPTP43490 491 aa18.11■□□□□ 0.49
SF3A1-209ENST00000496189 NASPP49321 788 aaPredicted RBP18.11■□□□□ 0.49
SF3A1-209ENST00000496189 PTPAQ15257 358 aa18.11■□□□□ 0.49
SF3A1-209ENST00000496189 FOXD4L6Q3SYB3 417 aaPredicted RBP18.11■□□□□ 0.49
SF3A1-209ENST00000496189 FOXD4L3Q6VB84 417 aaPredicted RBP18.11■□□□□ 0.49
SF3A1-209ENST00000496189 HACE1Q8IYU2 909 aa18.11■□□□□ 0.49
SF3A1-209ENST00000496189 CRIPAKQ8N1N5 446 aa18.11■□□□□ 0.49
SF3A1-209ENST00000496189 MICALL1Q8N3F8 863 aa18.11■□□□□ 0.49
SF3A1-209ENST00000496189 CNNM3Q8NE01 707 aa18.11■□□□□ 0.49
SF3A1-209ENST00000496189 CCDC51Q96ER9 411 aa18.11■□□□□ 0.49
SF3A1-209ENST00000496189 PRIMPOLQ96LW4 560 aa18.11■□□□□ 0.49
SF3A1-209ENST00000496189 TRAIPQ9BWF2 469 aa18.11■□□□□ 0.49
SF3A1-209ENST00000496189 MRPL9Q9BYD2 267 aaKnown RBP18.11■□□□□ 0.49
SF3A1-209ENST00000496189 TRIM6Q9C030 488 aaPredicted RBP18.11■□□□□ 0.49
SF3A1-209ENST00000496189 TMEM117Q9H0C3 514 aa18.11■□□□□ 0.49
SF3A1-209ENST00000496189 FAM105AQ9NUU6 356 aa18.11■□□□□ 0.49
SF3A1-209ENST00000496189 LMCD1Q9NZU5 365 aa18.11■□□□□ 0.49
SF3A1-209ENST00000496189 KCND2Q9NZV8 630 aa18.11■□□□□ 0.49
SF3A1-209ENST00000496189 TFIP11Q9UBB9 837 aaKnown RBP18.11■□□□□ 0.49
SF3A1-209ENST00000496189 PHLPP2Q6ZVD8 1323 aa18.1■□□□□ 0.49
SF3A1-209ENST00000496189 BMPR1AP36894 532 aa18.1■□□□□ 0.49
SF3A1-209ENST00000496189 EFNA5P52803 228 aa18.1■□□□□ 0.49
SF3A1-209ENST00000496189 DMP1Q13316 513 aaPredicted RBP18.1■□□□□ 0.49
SF3A1-209ENST00000496189 GRB10Q13322 594 aa18.1■□□□□ 0.49
SF3A1-209ENST00000496189 GPM6BQ13491 265 aa18.1■□□□□ 0.49
SF3A1-209ENST00000496189 KRI1Q8N9T8 703 aaKnown RBP18.1■□□□□ 0.49
SF3A1-209ENST00000496189 PPM1EQ8WY54 764 aa18.1■□□□□ 0.49
SF3A1-209ENST00000496189 CLP1Q92989 425 aaKnown RBP18.1■□□□□ 0.49
SF3A1-209ENST00000496189 PLIN2Q99541 437 aa18.1■□□□□ 0.49
SF3A1-209ENST00000496189 PLVAPQ9BX97 442 aa18.1■□□□□ 0.49
SF3A1-209ENST00000496189 MINDY3Q9H8M7 445 aa18.1■□□□□ 0.49
SF3A1-209ENST00000496189 PCDHB12Q9Y5F1 795 aa18.1■□□□□ 0.49
SF3A1-209ENST00000496189 SRPRBQ9Y5M8 271 aaKnown RBP18.1■□□□□ 0.49
SF3A1-209ENST00000496189 RALGAPA2Q2PPJ7 1873 aa18.09■□□□□ 0.49
SF3A1-209ENST00000496189 CARNS1A5YM72 827 aa18.09■□□□□ 0.49
SF3A1-209ENST00000496189 RFXAPO00287 272 aa18.09■□□□□ 0.49
SF3A1-209ENST00000496189 SPTLC2O15270 562 aa18.09■□□□□ 0.49
SF3A1-209ENST00000496189 FGFR1P11362 822 aa18.09■□□□□ 0.49
SF3A1-209ENST00000496189 MBTD1Q05BQ5 628 aa18.09■□□□□ 0.49
SF3A1-209ENST00000496189 MAPK6Q16659 721 aa18.09■□□□□ 0.49
SF3A1-209ENST00000496189 CSPP1Q1MSJ5 1256 aa18.09■□□□□ 0.49
SF3A1-209ENST00000496189 NAALADL2Q58DX5 795 aa18.09■□□□□ 0.49
SF3A1-209ENST00000496189 GLB1LQ6UWU2 654 aa18.09■□□□□ 0.49
SF3A1-209ENST00000496189 APBB1IPQ7Z5R6 666 aaPredicted RBP18.09■□□□□ 0.49
SF3A1-209ENST00000496189 LRRC43Q8N309 656 aa18.09■□□□□ 0.49
SF3A1-209ENST00000496189 LINC00301Q8NCQ3 95 aa18.09■□□□□ 0.49
SF3A1-209ENST00000496189 KCNG4Q8TDN1 519 aa18.09■□□□□ 0.49
SF3A1-209ENST00000496189 CSRNP2Q9H175 543 aa18.09■□□□□ 0.49
SF3A1-209ENST00000496189 C17orf75Q9HAS0 396 aa18.09■□□□□ 0.49
SF3A1-209ENST00000496189 CIZ1Q9ULV3 898 aaPredicted RBP18.09■□□□□ 0.49
SF3A1-209ENST00000496189 ZDHHC9Q9Y397 364 aa18.09■□□□□ 0.49
SF3A1-209ENST00000496189 MRPL42Q9Y6G3 142 aaKnown RBP18.09■□□□□ 0.49
SF3A1-209ENST00000496189 EPOPA6NHQ4 379 aa18.08■□□□□ 0.48
SF3A1-209ENST00000496189 CCDC169A6NNP5 214 aa18.08■□□□□ 0.48
SF3A1-209ENST00000496189 C5orf67F2Z3F1 127 aa18.08■□□□□ 0.48
SF3A1-209ENST00000496189 H3BNC9 293 aa18.08■□□□□ 0.48
SF3A1-209ENST00000496189 TSPAN1O60635 241 aa18.08■□□□□ 0.48
SF3A1-209ENST00000496189 HIP1RO75146 1068 aa18.08■□□□□ 0.48
SF3A1-209ENST00000496189 PPP6R2O75170 966 aa18.08■□□□□ 0.48
SF3A1-209ENST00000496189 KRT18P05783 430 aaKnown RBP18.08■□□□□ 0.48
SF3A1-209ENST00000496189 PLA2G4BP0C869 781 aa18.08■□□□□ 0.48
SF3A1-209ENST00000496189 LAG3P18627 525 aa18.08■□□□□ 0.48
SF3A1-209ENST00000496189 LIG1P18858 919 aa18.08■□□□□ 0.48
SF3A1-209ENST00000496189 POU3F3P20264 500 aaPredicted RBP18.08■□□□□ 0.48
SF3A1-209ENST00000496189 SMTNP53814 917 aa18.08■□□□□ 0.48
SF3A1-209ENST00000496189 KRT85P78386 507 aa18.08■□□□□ 0.48
SF3A1-209ENST00000496189 ADGRE1Q14246 886 aa18.08■□□□□ 0.48
SF3A1-209ENST00000496189 TMEM119Q4V9L6 283 aa18.08■□□□□ 0.48
SF3A1-209ENST00000496189 CDCA2Q69YH5 1023 aaPredicted RBP18.08■□□□□ 0.48
SF3A1-209ENST00000496189 RINT1Q6NUQ1 792 aa18.08■□□□□ 0.48
SF3A1-209ENST00000496189 SYT2Q8N9I0 419 aaPredicted RBP18.08■□□□□ 0.48
SF3A1-209ENST00000496189 URGCPQ8TCY9 931 aa18.08■□□□□ 0.48
SF3A1-209ENST00000496189 PNMA5Q96PV4 448 aa18.08■□□□□ 0.48
SF3A1-209ENST00000496189 ADPGKQ9BRR6 497 aa18.08■□□□□ 0.48
SF3A1-209ENST00000496189 CCSER1Q9C0I3 900 aa18.08■□□□□ 0.48
SF3A1-209ENST00000496189 UBN1Q9NPG3 1134 aa18.08■□□□□ 0.48
SF3A1-209ENST00000496189 FBXO2Q9UK22 296 aaPredicted RBP18.08■□□□□ 0.48
SF3A1-209ENST00000496189 PCDHB2Q9Y5E7 798 aa18.08■□□□□ 0.48
SF3A1-209ENST00000496189 NLRC5Q86WI3 1866 aa18.07■□□□□ 0.48
SF3A1-209ENST00000496189 CNTNAP2Q9UHC6 1331 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms