RNA–Protein interactions for RNA: ENST00000494669.2

FGD3-208, Transcript of FYVE, RhoGEF and PH domain containing 3, human

TSL 3

Gene FGD3, Length 915 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FGD3-208	ENST00000494669	TRAPPC10	P48553	1259 aa		13.9	□□□□□ -0.18
FGD3-208	ENST00000494669	CLCN3	P51790	818 aa		13.9	□□□□□ -0.18
FGD3-208	ENST00000494669	FAM189B	P81408	668 aa		13.9	□□□□□ -0.18
FGD3-208	ENST00000494669	GNL2	Q13823	731 aa	Known RBP	13.9	□□□□□ -0.18
FGD3-208	ENST00000494669	DSC3	Q14574	896 aa		13.9	□□□□□ -0.18
FGD3-208	ENST00000494669	NBR1	Q14596	966 aa		13.9	□□□□□ -0.18
FGD3-208	ENST00000494669	ZNF174	Q15697	407 aa		13.9	□□□□□ -0.18
FGD3-208	ENST00000494669	CALCRL	Q16602	461 aa		13.9	□□□□□ -0.18
FGD3-208	ENST00000494669	PDE12	Q6L8Q7	609 aa	Known RBP	13.9	□□□□□ -0.18
FGD3-208	ENST00000494669	SYCE2	Q6PIF2	218 aa		13.9	□□□□□ -0.18
FGD3-208	ENST00000494669	TMEM184A	Q6ZMB5	413 aa		13.9	□□□□□ -0.18
FGD3-208	ENST00000494669	LRRC55	Q6ZSA7	311 aa		13.9	□□□□□ -0.18
FGD3-208	ENST00000494669	ZBTB33	Q86T24	672 aa		13.9	□□□□□ -0.18
FGD3-208	ENST00000494669	ZNF579	Q8NAF0	562 aa	Known RBP	13.9	□□□□□ -0.18
FGD3-208	ENST00000494669	SNX21	Q969T3	373 aa		13.9	□□□□□ -0.18
FGD3-208	ENST00000494669	FAM167A	Q96KS9	214 aa		13.9	□□□□□ -0.18
FGD3-208	ENST00000494669	CASD1	Q96PB1	797 aa		13.9	□□□□□ -0.18
FGD3-208	ENST00000494669	ELAC1	Q9H777	363 aa	Known RBP	13.9	□□□□□ -0.18
FGD3-208	ENST00000494669	TTC12	Q9H892	705 aa	Predicted RBP	13.9	□□□□□ -0.18
FGD3-208	ENST00000494669	TSHZ2	Q9NRE2	1034 aa		13.9	□□□□□ -0.18
FGD3-208	ENST00000494669	NRBP2	Q9NSY0	501 aa		13.9	□□□□□ -0.18
FGD3-208	ENST00000494669	RGL1	Q9NZL6	768 aa		13.9	□□□□□ -0.18
FGD3-208	ENST00000494669	PUF60	Q9UHX1	559 aa	Known RBP	13.9	□□□□□ -0.18
FGD3-208	ENST00000494669	LZTS1	Q9Y250	596 aa		13.9	□□□□□ -0.18
FGD3-208	ENST00000494669	VPS13A	Q96RL7	3174 aa		13.89	□□□□□ -0.19
FGD3-208	ENST00000494669	CACNA1H	O95180	2353 aa		13.89	□□□□□ -0.19
FGD3-208	ENST00000494669	ZBTB39	O15060	712 aa		13.89	□□□□□ -0.19
FGD3-208	ENST00000494669	PDGFB	P01127	241 aa	Predicted RBP	13.89	□□□□□ -0.19
FGD3-208	ENST00000494669	P4HB	P07237	508 aa	Known RBP	13.89	□□□□□ -0.19
FGD3-208	ENST00000494669	AVPR2	P30518	371 aa		13.89	□□□□□ -0.19
FGD3-208	ENST00000494669	MCM7	P33993	719 aa		13.89	□□□□□ -0.19
FGD3-208	ENST00000494669	QARS	P47897	775 aa	Known RBP	13.89	□□□□□ -0.19
FGD3-208	ENST00000494669	PSMC5	P62195	406 aa		13.89	□□□□□ -0.19
FGD3-208	ENST00000494669	PLCB3	Q01970	1234 aa		13.89	□□□□□ -0.19
FGD3-208	ENST00000494669	ORC2	Q13416	577 aa	Predicted RBP	13.89	□□□□□ -0.19
FGD3-208	ENST00000494669	XKR3	Q5GH77	459 aa		13.89	□□□□□ -0.19
FGD3-208	ENST00000494669	KCNT2	Q6UVM3	1135 aa		13.89	□□□□□ -0.19
FGD3-208	ENST00000494669	FAM43B	Q6ZT52	329 aa	Predicted RBP	13.89	□□□□□ -0.19
FGD3-208	ENST00000494669	RNF169	Q8NCN4	708 aa		13.89	□□□□□ -0.19
FGD3-208	ENST00000494669	ZNF668	Q96K58	619 aa	Predicted RBP	13.89	□□□□□ -0.19
FGD3-208	ENST00000494669	SH2D3A	Q9BRG2	576 aa		13.89	□□□□□ -0.19
FGD3-208	ENST00000494669	TMEM117	Q9H0C3	514 aa		13.89	□□□□□ -0.19
FGD3-208	ENST00000494669	FOXD4L1	Q9NU39	408 aa		13.89	□□□□□ -0.19
FGD3-208	ENST00000494669	RNF19A	Q9NV58	838 aa		13.89	□□□□□ -0.19
FGD3-208	ENST00000494669	PCDHA12	Q9UN75	941 aa		13.89	□□□□□ -0.19
FGD3-208	ENST00000494669	SMC3	Q9UQE7	1217 aa		13.89	□□□□□ -0.19
FGD3-208	ENST00000494669	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	13.89	□□□□□ -0.19
FGD3-208	ENST00000494669	PCDHB6	Q9Y5E3	794 aa		13.89	□□□□□ -0.19
FGD3-208	ENST00000494669	MARCH6	O60337	910 aa		13.88	□□□□□ -0.19
FGD3-208	ENST00000494669	BAG4	O95429	457 aa	Known RBP	13.88	□□□□□ -0.19
FGD3-208	ENST00000494669	SPATA31C1	P0DKV0	1188 aa		13.88	□□□□□ -0.19
FGD3-208	ENST00000494669	TXK	P42681	527 aa		13.88	□□□□□ -0.19
FGD3-208	ENST00000494669	NLRP11	P59045	1033 aa	Known RBP	13.88	□□□□□ -0.19
FGD3-208	ENST00000494669	FOXK2	Q01167	660 aa		13.88	□□□□□ -0.19
FGD3-208	ENST00000494669	DRP2	Q13474	957 aa		13.88	□□□□□ -0.19
FGD3-208	ENST00000494669	IL17A	Q16552	155 aa		13.88	□□□□□ -0.19
FGD3-208	ENST00000494669	TTC38	Q5R3I4	469 aa		13.88	□□□□□ -0.19
FGD3-208	ENST00000494669	TMC7	Q7Z402	723 aa		13.88	□□□□□ -0.19
FGD3-208	ENST00000494669	C4orf19	Q8IY42	314 aa		13.88	□□□□□ -0.19
FGD3-208	ENST00000494669	ABI1	Q8IZP0	508 aa		13.88	□□□□□ -0.19
FGD3-208	ENST00000494669	LRRC43	Q8N309	656 aa		13.88	□□□□□ -0.19
FGD3-208	ENST00000494669	LRRC71	Q8N4P6	559 aa		13.88	□□□□□ -0.19
FGD3-208	ENST00000494669	DYDC2	Q96IM9	177 aa		13.88	□□□□□ -0.19
FGD3-208	ENST00000494669	ZNF558	Q96NG5	402 aa		13.88	□□□□□ -0.19
FGD3-208	ENST00000494669	EIF2AK1	Q9BQI3	630 aa	Known RBP	13.88	□□□□□ -0.19
FGD3-208	ENST00000494669	ADAMTS10	Q9H324	1103 aa		13.88	□□□□□ -0.19
FGD3-208	ENST00000494669	NGRN	Q9NPE2	291 aa	Known RBP	13.88	□□□□□ -0.19
FGD3-208	ENST00000494669	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	13.88	□□□□□ -0.19
FGD3-208	ENST00000494669	CEP131	Q9UPN4	1083 aa		13.88	□□□□□ -0.19
FGD3-208	ENST00000494669	AKT3	Q9Y243	479 aa		13.88	□□□□□ -0.19
FGD3-208	ENST00000494669	POTEM	A6NI47	508 aa		13.87	□□□□□ -0.19
FGD3-208	ENST00000494669	PROB1	E7EW31	1015 aa		13.87	□□□□□ -0.19
FGD3-208	ENST00000494669	MAGEB2	O15479	319 aa		13.87	□□□□□ -0.19
FGD3-208	ENST00000494669	HOXA2	O43364	376 aa		13.87	□□□□□ -0.19
FGD3-208	ENST00000494669	MAF	O75444	373 aa	Predicted RBP	13.87	□□□□□ -0.19
FGD3-208	ENST00000494669	LYPLA2	O95372	231 aa		13.87	□□□□□ -0.19
FGD3-208	ENST00000494669	PPM1A	P35813	382 aa		13.87	□□□□□ -0.19
FGD3-208	ENST00000494669	NPEPPS	P55786	919 aa		13.87	□□□□□ -0.19
FGD3-208	ENST00000494669	KRT17	Q04695	432 aa		13.87	□□□□□ -0.19
FGD3-208	ENST00000494669	CTTN	Q14247	550 aa	Known RBP	13.87	□□□□□ -0.19
FGD3-208	ENST00000494669	PLA2G4F	Q68DD2	849 aa		13.87	□□□□□ -0.19
FGD3-208	ENST00000494669	MCTP1	Q6DN14	999 aa		13.87	□□□□□ -0.19
FGD3-208	ENST00000494669	NCAPH2	Q6IBW4	605 aa		13.87	□□□□□ -0.19
FGD3-208	ENST00000494669	EFCAB12	Q6NXP0	572 aa		13.87	□□□□□ -0.19
FGD3-208	ENST00000494669	KREMEN2	Q8NCW0	462 aa		13.87	□□□□□ -0.19
FGD3-208	ENST00000494669	ATOH1	Q92858	354 aa	Predicted RBP	13.87	□□□□□ -0.19
FGD3-208	ENST00000494669	INTS4	Q96HW7	963 aa	Known RBP	13.87	□□□□□ -0.19
FGD3-208	ENST00000494669	SPG21	Q9NZD8	308 aa		13.87	□□□□□ -0.19
FGD3-208	ENST00000494669	PLXNA3	P51805	1871 aa		13.87	□□□□□ -0.19
FGD3-208	ENST00000494669	DDX11L8	A8MPP1	907 aa		13.86	□□□□□ -0.19
FGD3-208	ENST00000494669		H0Y858	1186 aa		13.86	□□□□□ -0.19
FGD3-208	ENST00000494669		K7ELQ4	463 aa	Predicted RBP	13.86	□□□□□ -0.19
FGD3-208	ENST00000494669	OR52Z1	P0C646	297 aa		13.86	□□□□□ -0.19
FGD3-208	ENST00000494669	ZSCAN20	P17040	1043 aa	Predicted RBP	13.86	□□□□□ -0.19
FGD3-208	ENST00000494669	HOXB8	P17481	243 aa	Predicted RBP	13.86	□□□□□ -0.19
FGD3-208	ENST00000494669	FGFR4	P22455	802 aa		13.86	□□□□□ -0.19
FGD3-208	ENST00000494669	CA8	P35219	290 aa		13.86	□□□□□ -0.19
FGD3-208	ENST00000494669	MTERF2	Q49AM1	385 aa		13.86	□□□□□ -0.19
FGD3-208	ENST00000494669	CLLU1OS	Q5K130	101 aa		13.86	□□□□□ -0.19
FGD3-208	ENST00000494669	LARP1B	Q659C4	914 aa	Known RBP	13.86	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms