RNA–Protein interactions for RNA: ENST00000493601.5

PTPRU-208, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 5

Gene PTPRU, Length 695 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-208ENST00000493601 LLGL2Q6P1M3 1020 aa18.59■□□□□ 0.57
PTPRU-208ENST00000493601 HFE2Q6ZVN8 426 aa18.59■□□□□ 0.57
PTPRU-208ENST00000493601 POTEDQ86YR6 584 aa18.59■□□□□ 0.57
PTPRU-208ENST00000493601 C4orf19Q8IY42 314 aa18.59■□□□□ 0.57
PTPRU-208ENST00000493601 EDAQ92838 391 aa18.59■□□□□ 0.57
PTPRU-208ENST00000493601 HAS1Q92839 578 aa18.59■□□□□ 0.57
PTPRU-208ENST00000493601 CASP10Q92851 521 aa18.59■□□□□ 0.57
PTPRU-208ENST00000493601 TMEM169Q96HH4 297 aa18.59■□□□□ 0.57
PTPRU-208ENST00000493601 DHX33Q9H6R0 707 aaKnown RBP18.59■□□□□ 0.57
PTPRU-208ENST00000493601 IFT122Q9HBG6 1241 aa18.59■□□□□ 0.57
PTPRU-208ENST00000493601 GJB4Q9NTQ9 266 aa18.59■□□□□ 0.57
PTPRU-208ENST00000493601 AGPAT5Q9NUQ2 364 aa18.59■□□□□ 0.57
PTPRU-208ENST00000493601 WRAP73Q9P2S5 460 aaPredicted RBP18.59■□□□□ 0.57
PTPRU-208ENST00000493601 ZNF623O75123 536 aa18.58■□□□□ 0.56
PTPRU-208ENST00000493601 BAG4O95429 457 aaKnown RBP18.58■□□□□ 0.56
PTPRU-208ENST00000493601 HOXD11P31277 338 aaPredicted RBP18.58■□□□□ 0.56
PTPRU-208ENST00000493601 YWHABP31946 246 aaKnown RBP18.58■□□□□ 0.56
PTPRU-208ENST00000493601 NOMO2Q5JPE7 1267 aa18.58■□□□□ 0.56
PTPRU-208ENST00000493601 NCAPH2Q6IBW4 605 aa18.58■□□□□ 0.56
PTPRU-208ENST00000493601 OTUD6AQ7L8S5 288 aa18.58■□□□□ 0.56
PTPRU-208ENST00000493601 MRPL43Q8N983 215 aaKnown RBP18.58■□□□□ 0.56
PTPRU-208ENST00000493601 TCP11Q8WWU5 503 aa18.58■□□□□ 0.56
PTPRU-208ENST00000493601 LPPQ93052 612 aa18.58■□□□□ 0.56
PTPRU-208ENST00000493601 PGBD4Q96DM1 585 aa18.58■□□□□ 0.56
PTPRU-208ENST00000493601 MFSD14AQ96MC6 490 aa18.58■□□□□ 0.56
PTPRU-208ENST00000493601 KCNH6Q9H252 994 aa18.58■□□□□ 0.56
PTPRU-208ENST00000493601 C2orf71A6NGG8 1288 aa18.57■□□□□ 0.56
PTPRU-208ENST00000493601 RNASELQ05823 741 aaKnown RBP18.57■□□□□ 0.56
PTPRU-208ENST00000493601 EMC2Q15006 297 aa18.57■□□□□ 0.56
PTPRU-208ENST00000493601 TPRNQ4KMQ1 711 aa18.57■□□□□ 0.56
PTPRU-208ENST00000493601 SRGAP1Q7Z6B7 1085 aa18.57■□□□□ 0.56
PTPRU-208ENST00000493601 ZNF579Q8NAF0 562 aaKnown RBP18.57■□□□□ 0.56
PTPRU-208ENST00000493601 PRPF31Q8WWY3 499 aaKnown RBP18.57■□□□□ 0.56
PTPRU-208ENST00000493601 TMEM143Q96AN5 459 aa18.57■□□□□ 0.56
PTPRU-208ENST00000493601 RPGRIP1Q96KN7 1286 aa18.57■□□□□ 0.56
PTPRU-208ENST00000493601 S1PR5Q9H228 398 aa18.57■□□□□ 0.56
PTPRU-208ENST00000493601 ZSWIM4Q9H7M6 989 aa18.57■□□□□ 0.56
PTPRU-208ENST00000493601 TBC1D13Q9NVG8 400 aa18.57■□□□□ 0.56
PTPRU-208ENST00000493601 INPP5FQ9Y2H2 1132 aa18.57■□□□□ 0.56
PTPRU-208ENST00000493601 NT5C1B-RDH14C9J2C7 533 aa18.56■□□□□ 0.56
PTPRU-208ENST00000493601 EIF5BO60841 1220 aaKnown RBP18.56■□□□□ 0.56
PTPRU-208ENST00000493601 SRGAP2CP0DJJ0 459 aa18.56■□□□□ 0.56
PTPRU-208ENST00000493601 CA8P35219 290 aa18.56■□□□□ 0.56
PTPRU-208ENST00000493601 SPIRE1Q08AE8 756 aa18.56■□□□□ 0.56
PTPRU-208ENST00000493601 LAMTOR4Q0VGL1 99 aa18.56■□□□□ 0.56
PTPRU-208ENST00000493601 NR5A1Q13285 461 aa18.56■□□□□ 0.56
PTPRU-208ENST00000493601 LONRF3Q496Y0 759 aa18.56■□□□□ 0.56
PTPRU-208ENST00000493601 EARS2Q5JPH6 523 aaKnown RBP18.56■□□□□ 0.56
PTPRU-208ENST00000493601 SYCE2Q6PIF2 218 aa18.56■□□□□ 0.56
PTPRU-208ENST00000493601 VPS52Q8N1B4 723 aa18.56■□□□□ 0.56
PTPRU-208ENST00000493601 URGCPQ8TCY9 931 aa18.56■□□□□ 0.56
PTPRU-208ENST00000493601 TNFRSF25Q93038 417 aa18.56■□□□□ 0.56
PTPRU-208ENST00000493601 GTF3C6Q969F1 213 aa18.56■□□□□ 0.56
PTPRU-208ENST00000493601 ZBP1Q9H171 429 aa18.56■□□□□ 0.56
PTPRU-208ENST00000493601 RGL1Q9NZL6 768 aa18.56■□□□□ 0.56
PTPRU-208ENST00000493601 PCDHB2Q9Y5E7 798 aa18.56■□□□□ 0.56
PTPRU-208ENST00000493601 HCFC2Q9Y5Z7 792 aa18.56■□□□□ 0.56
PTPRU-208ENST00000493601 TECTAO75443 2155 aa18.56■□□□□ 0.56
PTPRU-208ENST00000493601 ZNF318Q5VUA4 2279 aa18.56■□□□□ 0.56
PTPRU-208ENST00000493601 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.55■□□□□ 0.56
PTPRU-208ENST00000493601 FAM205CA6NFA0 338 aa18.55■□□□□ 0.56
PTPRU-208ENST00000493601 ASAP2O43150 1006 aa18.55■□□□□ 0.56
PTPRU-208ENST00000493601 DTNBO60941 627 aa18.55■□□□□ 0.56
PTPRU-208ENST00000493601 CYP4A11Q02928 519 aa18.55■□□□□ 0.56
PTPRU-208ENST00000493601 GIT2Q14161 759 aa18.55■□□□□ 0.56
PTPRU-208ENST00000493601 XKR9Q5GH70 373 aa18.55■□□□□ 0.56
PTPRU-208ENST00000493601 DDX53Q86TM3 631 aaKnown RBP18.55■□□□□ 0.56
PTPRU-208ENST00000493601 NECAB1Q8N987 351 aa18.55■□□□□ 0.56
PTPRU-208ENST00000493601 TMEM87AQ8NBN3 555 aa18.55■□□□□ 0.56
PTPRU-208ENST00000493601 IGSF21Q96ID5 467 aa18.55■□□□□ 0.56
PTPRU-208ENST00000493601 DYDC2Q96IM9 177 aa18.55■□□□□ 0.56
PTPRU-208ENST00000493601 MTRQ99707 1265 aa18.55■□□□□ 0.56
PTPRU-208ENST00000493601 APOL5Q9BWW9 433 aa18.55■□□□□ 0.56
PTPRU-208ENST00000493601 BMP2KQ9NSY1 1161 aaPredicted RBP18.55■□□□□ 0.56
PTPRU-208ENST00000493601 PPP4R2Q9NY27 417 aa18.55■□□□□ 0.56
PTPRU-208ENST00000493601 STK39Q9UEW8 545 aa18.55■□□□□ 0.56
PTPRU-208ENST00000493601 CNTNAP2Q9UHC6 1331 aa18.54■□□□□ 0.56
PTPRU-208ENST00000493601 MEIS3P2A8K0S8 358 aa18.54■□□□□ 0.56
PTPRU-208ENST00000493601 CLASP2O75122 1294 aaKnown RBP18.54■□□□□ 0.56
PTPRU-208ENST00000493601 OFD1O75665 1012 aa18.54■□□□□ 0.56
PTPRU-208ENST00000493601 ERLIN2O94905 339 aa18.54■□□□□ 0.56
PTPRU-208ENST00000493601 FDPSP14324 419 aaKnown RBP18.54■□□□□ 0.56
PTPRU-208ENST00000493601 ZXDAP98168 799 aa18.54■□□□□ 0.56
PTPRU-208ENST00000493601 ITIH3Q06033 890 aa18.54■□□□□ 0.56
PTPRU-208ENST00000493601 TRIM29Q14134 588 aa18.54■□□□□ 0.56
PTPRU-208ENST00000493601 CTTNQ14247 550 aaKnown RBP18.54■□□□□ 0.56
PTPRU-208ENST00000493601 PCBP1Q15365 356 aaKnown RBP eCLIP18.54■□□□□ 0.56
PTPRU-208ENST00000493601 CALCRLQ16602 461 aa18.54■□□□□ 0.56
PTPRU-208ENST00000493601 ME3Q16798 604 aa18.54■□□□□ 0.56
PTPRU-208ENST00000493601 CES5AQ6NT32 575 aa18.54■□□□□ 0.56
PTPRU-208ENST00000493601 TRIM67Q6ZTA4 783 aa18.54■□□□□ 0.56
PTPRU-208ENST00000493601 FERMT3Q86UX7 667 aa18.54■□□□□ 0.56
PTPRU-208ENST00000493601 TMEM173Q86WV6 379 aaPredicted RBP18.54■□□□□ 0.56
PTPRU-208ENST00000493601 TPH2Q8IWU9 490 aa18.54■□□□□ 0.56
PTPRU-208ENST00000493601 RNF149Q8NC42 400 aa18.54■□□□□ 0.56
PTPRU-208ENST00000493601 NECTIN4Q96NY8 510 aa18.54■□□□□ 0.56
PTPRU-208ENST00000493601 GBP3Q9H0R5 595 aa18.54■□□□□ 0.56
PTPRU-208ENST00000493601 NRDE2Q9H7Z3 1164 aa18.54■□□□□ 0.56
PTPRU-208ENST00000493601 MINDY3Q9H8M7 445 aa18.54■□□□□ 0.56
PTPRU-208ENST00000493601 PCDHA12Q9UN75 941 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms