RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 SF3A1Q15459 793 aaKnown RBP15.44■□□□□ 0.06
SYNE1-226ENST00000488376 SKIV2LQ15477 1246 aaKnown RBP15.44■□□□□ 0.06
SYNE1-226ENST00000488376 ZRSR1Q15695 479 aaKnown RBP15.44■□□□□ 0.06
SYNE1-226ENST00000488376 CDR2LQ86X02 465 aaPredicted RBP15.44■□□□□ 0.06
SYNE1-226ENST00000488376 KLHL23Q8NBE8 558 aa15.44■□□□□ 0.06
SYNE1-226ENST00000488376 LRRC15Q8TF66 581 aa15.44■□□□□ 0.06
SYNE1-226ENST00000488376 MRPL38Q96DV4 380 aaKnown RBP15.44■□□□□ 0.06
SYNE1-226ENST00000488376 EIF2AQ9BY44 585 aaKnown RBP15.44■□□□□ 0.06
SYNE1-226ENST00000488376 INO80BQ9C086 356 aaPredicted RBP15.44■□□□□ 0.06
SYNE1-226ENST00000488376 CHST12Q9NRB3 414 aa15.44■□□□□ 0.06
SYNE1-226ENST00000488376 FAM105AQ9NUU6 356 aa15.44■□□□□ 0.06
SYNE1-226ENST00000488376 USP20Q9Y2K6 914 aa15.44■□□□□ 0.06
SYNE1-226ENST00000488376 PCDHGC5Q9Y5F6 944 aa15.44■□□□□ 0.06
SYNE1-226ENST00000488376 XIRP2A4UGR9 3374 aa15.43■□□□□ 0.06
SYNE1-226ENST00000488376 LRRIQ4A6NIV6 560 aa15.43■□□□□ 0.06
SYNE1-226ENST00000488376 INO80B-WBP1J3KQ70 363 aa15.43■□□□□ 0.06
SYNE1-226ENST00000488376 EDN1P05305 212 aa15.43■□□□□ 0.06
SYNE1-226ENST00000488376 AFF1P51825 1210 aaKnown RBP15.43■□□□□ 0.06
SYNE1-226ENST00000488376 KRT79Q5XKE5 535 aa15.43■□□□□ 0.06
SYNE1-226ENST00000488376 IFNLR1Q8IU57 520 aaPredicted RBP15.43■□□□□ 0.06
SYNE1-226ENST00000488376 COLGALT1Q8NBJ5 622 aa15.43■□□□□ 0.06
SYNE1-226ENST00000488376 MCPH1Q8NEM0 835 aa15.43■□□□□ 0.06
SYNE1-226ENST00000488376 C11orf84Q9BUA3 381 aaPredicted RBP15.43■□□□□ 0.06
SYNE1-226ENST00000488376 KIFC3Q9BVG8 833 aa15.43■□□□□ 0.06
SYNE1-226ENST00000488376 RUSC1Q9BVN2 902 aa15.43■□□□□ 0.06
SYNE1-226ENST00000488376 TRAIPQ9BWF2 469 aa15.43■□□□□ 0.06
SYNE1-226ENST00000488376 TMEM117Q9H0C3 514 aa15.43■□□□□ 0.06
SYNE1-226ENST00000488376 DACT1Q9NYF0 836 aa15.43■□□□□ 0.06
SYNE1-226ENST00000488376 LMCD1Q9NZU5 365 aa15.43■□□□□ 0.06
SYNE1-226ENST00000488376 PLAGL2Q9UPG8 496 aa15.43■□□□□ 0.06
SYNE1-226ENST00000488376 PCDHB2Q9Y5E7 798 aa15.43■□□□□ 0.06
SYNE1-226ENST00000488376 RALGAPA2Q2PPJ7 1873 aa15.43■□□□□ 0.06
SYNE1-226ENST00000488376 MYO9BQ13459 2157 aa15.42■□□□□ 0.06
SYNE1-226ENST00000488376 FNDC1Q4ZHG4 1894 aaPredicted RBP15.42■□□□□ 0.06
SYNE1-226ENST00000488376 B4GALT3O60512 393 aa15.42■□□□□ 0.06
SYNE1-226ENST00000488376 EYA4O95677 639 aa15.42■□□□□ 0.06
SYNE1-226ENST00000488376 RB1P06400 928 aa15.42■□□□□ 0.06
SYNE1-226ENST00000488376 PDCP20941 246 aa15.42■□□□□ 0.06
SYNE1-226ENST00000488376 MUTP22033 750 aa15.42■□□□□ 0.06
SYNE1-226ENST00000488376 IRS1P35568 1242 aa15.42■□□□□ 0.06
SYNE1-226ENST00000488376 TFDP1Q14186 410 aa15.42■□□□□ 0.06
SYNE1-226ENST00000488376 PTPAQ15257 358 aa15.42■□□□□ 0.06
SYNE1-226ENST00000488376 SPOUT1Q5T280 376 aaKnown RBP15.42■□□□□ 0.06
SYNE1-226ENST00000488376 ARL6IP4Q66PJ3 421 aaKnown RBP15.42■□□□□ 0.06
SYNE1-226ENST00000488376 AGMOQ6ZNB7 445 aa15.42■□□□□ 0.06
SYNE1-226ENST00000488376 FAM43BQ6ZT52 329 aaPredicted RBP15.42■□□□□ 0.06
SYNE1-226ENST00000488376 DAW1Q8N136 415 aa15.42■□□□□ 0.06
SYNE1-226ENST00000488376 SPRYD3Q8NCJ5 442 aa15.42■□□□□ 0.06
SYNE1-226ENST00000488376 SMG8Q8ND04 991 aaKnown RBP15.42■□□□□ 0.06
SYNE1-226ENST00000488376 SPPL3Q8TCT6 385 aa15.42■□□□□ 0.06
SYNE1-226ENST00000488376 RAB34Q9BZG1 259 aa15.42■□□□□ 0.06
SYNE1-226ENST00000488376 RNF39Q9H2S5 420 aa15.42■□□□□ 0.06
SYNE1-226ENST00000488376 THEGQ9P2T0 379 aa15.42■□□□□ 0.06
SYNE1-226ENST00000488376 RWDD3Q9Y3V2 267 aa15.42■□□□□ 0.06
SYNE1-226ENST00000488376 A0A0C4DFX4 3053 aa15.41■□□□□ 0.06
SYNE1-226ENST00000488376 STX6O43752 255 aa15.41■□□□□ 0.06
SYNE1-226ENST00000488376 ERLIN2O94905 339 aa15.41■□□□□ 0.06
SYNE1-226ENST00000488376 EOMESO95936 686 aa15.41■□□□□ 0.06
SYNE1-226ENST00000488376 ARF4P18085 180 aaPredicted RBP15.41■□□□□ 0.06
SYNE1-226ENST00000488376 GTF2F1P35269 517 aaKnown RBP eCLIP15.41■□□□□ 0.06
SYNE1-226ENST00000488376 KCNQ1P51787 676 aa15.41■□□□□ 0.06
SYNE1-226ENST00000488376 CEBPZQ03701 1054 aaKnown RBP15.41■□□□□ 0.06
SYNE1-226ENST00000488376 POU5F1BQ06416 359 aa15.41■□□□□ 0.06
SYNE1-226ENST00000488376 MAPK7Q13164 816 aa15.41■□□□□ 0.06
SYNE1-226ENST00000488376 TCEAL5Q5H9L2 206 aa15.41■□□□□ 0.06
SYNE1-226ENST00000488376 HYIQ5T013 277 aa15.41■□□□□ 0.06
SYNE1-226ENST00000488376 CDCA2Q69YH5 1023 aaPredicted RBP15.41■□□□□ 0.06
SYNE1-226ENST00000488376 HSCBQ8IWL3 235 aa15.41■□□□□ 0.06
SYNE1-226ENST00000488376 PLVAPQ9BX97 442 aa15.41■□□□□ 0.06
SYNE1-226ENST00000488376 NFKBIZQ9BYH8 718 aa15.41■□□□□ 0.06
SYNE1-226ENST00000488376 INPP5FQ9Y2H2 1132 aa15.41■□□□□ 0.06
SYNE1-226ENST00000488376 HES2Q9Y543 173 aa15.41■□□□□ 0.06
SYNE1-226ENST00000488376 ATG2AQ2TAZ0 1938 aa15.41■□□□□ 0.06
SYNE1-226ENST00000488376 ZNF623O75123 536 aa15.4■□□□□ 0.06
SYNE1-226ENST00000488376 OFD1O75665 1012 aa15.4■□□□□ 0.06
SYNE1-226ENST00000488376 LIG1P18858 919 aa15.4■□□□□ 0.06
SYNE1-226ENST00000488376 MARCKSP29966 332 aaPredicted RBP15.4■□□□□ 0.06
SYNE1-226ENST00000488376 RAD51AP2Q09MP3 1159 aa15.4■□□□□ 0.06
SYNE1-226ENST00000488376 PTPROQ16827 1216 aa15.4■□□□□ 0.06
SYNE1-226ENST00000488376 TMEM119Q4V9L6 283 aa15.4■□□□□ 0.06
SYNE1-226ENST00000488376 SPECC1Q5M775 1068 aa15.4■□□□□ 0.06
SYNE1-226ENST00000488376 FOXD4L5Q5VV16 416 aaPredicted RBP15.4■□□□□ 0.06
SYNE1-226ENST00000488376 RINT1Q6NUQ1 792 aa15.4■□□□□ 0.06
SYNE1-226ENST00000488376 USP49Q70CQ1 688 aa15.4■□□□□ 0.06
SYNE1-226ENST00000488376 ADGRD2Q7Z7M1 963 aa15.4■□□□□ 0.06
SYNE1-226ENST00000488376 ABI1Q8IZP0 508 aa15.4■□□□□ 0.06
SYNE1-226ENST00000488376 LRRC43Q8N309 656 aa15.4■□□□□ 0.06
SYNE1-226ENST00000488376 FOXD4L4Q8WXT5 416 aaPredicted RBP15.4■□□□□ 0.06
SYNE1-226ENST00000488376 P2RX5Q93086 422 aa15.4■□□□□ 0.06
SYNE1-226ENST00000488376 COL25A1Q9BXS0 654 aaPredicted RBP15.4■□□□□ 0.06
SYNE1-226ENST00000488376 CCDC113Q9H0I3 377 aa15.4■□□□□ 0.06
SYNE1-226ENST00000488376 DNM3Q9UQ16 869 aa15.4■□□□□ 0.06
SYNE1-226ENST00000488376 NPHP3-ACAD11A0A0J9YXS1 232 aa15.39■□□□□ 0.05
SYNE1-226ENST00000488376 NT5C1B-RDH14C9J2C7 533 aa15.39■□□□□ 0.05
SYNE1-226ENST00000488376 HOXA2O43364 376 aa15.39■□□□□ 0.05
SYNE1-226ENST00000488376 HIP1RO75146 1068 aa15.39■□□□□ 0.05
SYNE1-226ENST00000488376 FGF18O76093 207 aa15.39■□□□□ 0.05
SYNE1-226ENST00000488376 RAB27AP51159 221 aa15.39■□□□□ 0.05
SYNE1-226ENST00000488376 PKP1Q13835 747 aa15.39■□□□□ 0.05
SYNE1-226ENST00000488376 KCNT2Q6UVM3 1135 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms