RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 CHRNA1P02708 482 aa8.91□□□□□ -0.98
USP40-216ENST00000485943 ZSCAN22P10073 491 aaPredicted RBP8.91□□□□□ -0.98
USP40-216ENST00000485943 SKIP12755 728 aa8.91□□□□□ -0.98
USP40-216ENST00000485943 XRCC6P12956 609 aaKnown RBP eCLIP8.91□□□□□ -0.98
USP40-216ENST00000485943 IGFBP4P22692 258 aa8.91□□□□□ -0.98
USP40-216ENST00000485943 EIF4BP23588 611 aaKnown RBP8.91□□□□□ -0.98
USP40-216ENST00000485943 MARCKSP29966 332 aaPredicted RBP8.91□□□□□ -0.98
USP40-216ENST00000485943 LONP1P36776 959 aaKnown RBP8.91□□□□□ -0.98
USP40-216ENST00000485943 ABL2P42684 1182 aa8.91□□□□□ -0.98
USP40-216ENST00000485943 ME1P48163 572 aa8.91□□□□□ -0.98
USP40-216ENST00000485943 SMTNP53814 917 aa8.91□□□□□ -0.98
USP40-216ENST00000485943 EPHB4P54760 987 aa8.91□□□□□ -0.98
USP40-216ENST00000485943 WDR5P61964 334 aaKnown RBP8.91□□□□□ -0.98
USP40-216ENST00000485943 ATP2C1P98194 919 aaPredicted RBP8.91□□□□□ -0.98
USP40-216ENST00000485943 DMP1Q13316 513 aaPredicted RBP8.91□□□□□ -0.98
USP40-216ENST00000485943 PLEKHG4Q58EX7 1191 aa8.91□□□□□ -0.98
USP40-216ENST00000485943 FAM26DQ5JW98 314 aa8.91□□□□□ -0.98
USP40-216ENST00000485943 FBXO47Q5MNV8 452 aa8.91□□□□□ -0.98
USP40-216ENST00000485943 FAM43BQ6ZT52 329 aaPredicted RBP8.91□□□□□ -0.98
USP40-216ENST00000485943 CATSPER3Q86XQ3 398 aa8.91□□□□□ -0.98
USP40-216ENST00000485943 KIAA0319LQ8IZA0 1049 aa8.91□□□□□ -0.98
USP40-216ENST00000485943 TMEM87AQ8NBN3 555 aa8.91□□□□□ -0.98
USP40-216ENST00000485943 RNF149Q8NC42 400 aa8.91□□□□□ -0.98
USP40-216ENST00000485943 PRR7Q8TB68 274 aa8.91□□□□□ -0.98
USP40-216ENST00000485943 WNT8BQ93098 351 aa8.91□□□□□ -0.98
USP40-216ENST00000485943 TMEM143Q96AN5 459 aa8.91□□□□□ -0.98
USP40-216ENST00000485943 DRC1Q96MC2 740 aa8.91□□□□□ -0.98
USP40-216ENST00000485943 PLIN2Q99541 437 aa8.91□□□□□ -0.98
USP40-216ENST00000485943 C2orf40Q9H1Z8 148 aa8.91□□□□□ -0.98
USP40-216ENST00000485943 C1orf112Q9NSG2 853 aa8.91□□□□□ -0.98
USP40-216ENST00000485943 FAM13BQ9NYF5 915 aa8.91□□□□□ -0.98
USP40-216ENST00000485943 KCNG1Q9UIX4 513 aa8.91□□□□□ -0.98
USP40-216ENST00000485943 PADI3Q9ULW8 664 aa8.91□□□□□ -0.98
USP40-216ENST00000485943 PIN4Q9Y237 131 aaKnown RBP8.91□□□□□ -0.98
USP40-216ENST00000485943 INSL6Q9Y581 213 aa8.91□□□□□ -0.98
USP40-216ENST00000485943 PCDHA11Q9Y5I1 949 aa8.91□□□□□ -0.98
USP40-216ENST00000485943 A0A087WZ62 844 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 CCDC169A6NNP5 214 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 F13A1P00488 732 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 CXCL10P02778 98 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 ATP4AP20648 1035 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 HOXC8P31273 242 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 CA8P35219 290 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 RABGGTBP53611 331 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 KRT85P78386 507 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 ADAM17P78536 824 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 NUCB2P80303 420 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 STRN3Q13033 797 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 BTG3Q14201 252 aaPredicted RBP8.9□□□□□ -0.98
USP40-216ENST00000485943 BMS1Q14692 1282 aaKnown RBP8.9□□□□□ -0.98
USP40-216ENST00000485943 LPIN1Q14693 890 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 TRIM71Q2Q1W2 868 aaKnown RBP8.9□□□□□ -0.98
USP40-216ENST00000485943 MARCH8Q5T0T0 291 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 ANO5Q75V66 913 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 SRGAP1Q7Z6B7 1085 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 RETREG3Q86VR2 466 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 HERC6Q8IVU3 1022 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 MICALL1Q8N3F8 863 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 FIBCD1Q8N539 461 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 KIFAP3Q92845 792 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 FAM193BQ96PV7 902 aaPredicted RBP8.9□□□□□ -0.98
USP40-216ENST00000485943 RAD9AQ99638 391 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 FDXACB1Q9BRP7 624 aaPredicted RBP8.9□□□□□ -0.98
USP40-216ENST00000485943 ADPGKQ9BRR6 497 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 PRR14Q9BWN1 585 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 KRTAP3-3Q9BYR6 98 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 KRTAP3-2Q9BYR7 98 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 POLR3FQ9H1D9 316 aaPredicted RBP8.9□□□□□ -0.98
USP40-216ENST00000485943 BHMT2Q9H2M3 363 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 NKX2-4Q9H2Z4 354 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 AAASQ9NRG9 546 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 CXXC1Q9P0U4 656 aaPredicted RBP8.9□□□□□ -0.98
USP40-216ENST00000485943 DBR1Q9UK59 544 aaKnown RBP8.9□□□□□ -0.98
USP40-216ENST00000485943 MTUS1Q9ULD2 1270 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 ST3GAL5Q9UNP4 418 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 RWDD3Q9Y3V2 267 aa8.9□□□□□ -0.98
USP40-216ENST00000485943 MICAL3Q7RTP6 2002 aa8.9□□□□□ -0.99
USP40-216ENST00000485943 MYH11P35749 1972 aa8.9□□□□□ -0.99
USP40-216ENST00000485943 MYO9BQ13459 2157 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 PHLPP2Q6ZVD8 1323 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 TMEM265A0A087WTH1 108 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 GRXCR1A8MXD5 290 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 WNT7AO00755 349 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 SPTLC2O15270 562 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 LPXNO60711 386 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 MED24O75448 989 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 FAM13AO94988 1023 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 LYPLA2O95372 231 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 FOSL2P15408 326 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 STAT6P42226 847 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 RARRES1P49788 294 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 TOB1P50616 345 aaPredicted RBP8.89□□□□□ -0.99
USP40-216ENST00000485943 FXR1P51114 621 aaKnown RBP eCLIP8.89□□□□□ -0.99
USP40-216ENST00000485943 RAB27AP51159 221 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 GPC3P51654 580 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 RNASELQ05823 741 aaKnown RBP8.89□□□□□ -0.99
USP40-216ENST00000485943 LAMTOR4Q0VGL1 99 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 RESTQ13127 1097 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 RRAGBQ5VZM2 374 aa8.89□□□□□ -0.99
USP40-216ENST00000485943 ATL3Q6DD88 541 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms