RNA–Protein interactions for RNA: ENST00000485627.1

CTSA-208, Transcript of cathepsin A, human

TSL 3

Gene CTSA, Length 695 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTSA-208	ENST00000485627	TMEM161B	Q8NDZ6	487 aa		10.45	□□□□□ -0.74
CTSA-208	ENST00000485627	PSPC1	Q8WXF1	523 aa	Known RBP	10.45	□□□□□ -0.74
CTSA-208	ENST00000485627	ARMC5	Q96C12	935 aa		10.45	□□□□□ -0.74
CTSA-208	ENST00000485627	BICD1	Q96G01	975 aa		10.45	□□□□□ -0.74
CTSA-208	ENST00000485627	NTPCR	Q9BSD7	190 aa	Known RBP	10.45	□□□□□ -0.74
CTSA-208	ENST00000485627	STRA6	Q9BX79	667 aa		10.45	□□□□□ -0.74
CTSA-208	ENST00000485627	NDST4	Q9H3R1	872 aa		10.45	□□□□□ -0.74
CTSA-208	ENST00000485627	SUGCT	Q9HAC7	445 aa		10.45	□□□□□ -0.74
CTSA-208	ENST00000485627	AGPAT3	Q9NRZ7	376 aa		10.45	□□□□□ -0.74
CTSA-208	ENST00000485627	FLRT1	Q9NZU1	646 aa		10.45	□□□□□ -0.74
CTSA-208	ENST00000485627	ARMCX3	Q9UH62	379 aa	Predicted RBP	10.45	□□□□□ -0.74
CTSA-208	ENST00000485627	MCM3AP	O60318	1980 aa		10.45	□□□□□ -0.74
CTSA-208	ENST00000485627		A0A1W2PQC6	194 aa		10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	LRRIQ4	A6NIV6	560 aa		10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	AKR1B15	C9JRZ8	316 aa	Predicted RBP	10.44	□□□□□ -0.74
CTSA-208	ENST00000485627		H3BRB1	525 aa		10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	MAGEB2	O15479	319 aa		10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	EXOC3	O60645	756 aa		10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	ZNF865	P0CJ78	1059 aa	Predicted RBP	10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	PRKAR2A	P13861	404 aa	Known RBP	10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	AKR1A1	P14550	325 aa		10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	TMOD1	P28289	359 aa		10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	HOXD13	P35453	343 aa		10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	ARL2	P36404	184 aa		10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	CPT1A	P50416	773 aa		10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	CYP2J2	P51589	502 aa		10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	MARS	P56192	900 aa	Known RBP	10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	HSP90AA2P	Q14568	343 aa	Predicted RBP	10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	MXD4	Q14582	209 aa	Predicted RBP	10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	ARHGEF6	Q15052	776 aa		10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	TSR1	Q2NL82	804 aa	Known RBP	10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	ARMCX5	Q6P1M9	558 aa		10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	TLK2	Q86UE8	772 aa		10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	MAP4K3	Q8IVH8	894 aa		10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	ZBTB8OS	Q8IWT0	167 aa		10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	LRRC8A	Q8IWT6	810 aa		10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	FAM186B	Q8IYM0	893 aa		10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	CCDC112	Q8NEF3	446 aa		10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	MKNK1	Q9BUB5	465 aa		10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	ARHGAP39	Q9C0H5	1083 aa		10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	TUT1	Q9H6E5	874 aa	Known RBP	10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	TBX20	Q9UMR3	447 aa		10.44	□□□□□ -0.74
CTSA-208	ENST00000485627		Q9Y3F1	56 aa		10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	MYH9	P35579	1960 aa	Known RBP	10.44	□□□□□ -0.74
CTSA-208	ENST00000485627	RANBP2	P49792	3224 aa	Known RBP	10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	COL1A2	P08123	1366 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	PHLPP2	Q6ZVD8	1323 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627		K7ERI5	159 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	ASAP2	O43150	1006 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	ZNF286B	P0CG31	522 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	KRT13	P13646	458 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	INSRR	P14616	1297 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	GLRA2	P23416	452 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	PBX1	P40424	430 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	FLT3LG	P49771	235 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	IGBP1	P78318	339 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	TFDP1	Q14186	410 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	PTPN21	Q16825	1174 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	TCERG1L	Q5VWI1	586 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	EFCAB12	Q6NXP0	572 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	CNGA4	Q8IV77	575 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	SLC9A9	Q8IVB4	645 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	TRIM59	Q8IWR1	403 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	METTL13	Q8N6R0	699 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	ASAP3	Q8TDY4	903 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	CACTIN	Q8WUQ7	758 aa	Known RBP	10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	CPLX3	Q8WVH0	158 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	BSND	Q8WZ55	320 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	IQCD	Q96DY2	449 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	ZNF333	Q96JL9	665 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	CEP89	Q96ST8	783 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	KIFC3	Q9BVG8	833 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	NUP58	Q9BVL2	599 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	C2orf40	Q9H1Z8	148 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	RNPEP	Q9H4A4	650 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	SPC25	Q9HBM1	224 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	SUCLA2	Q9P2R7	463 aa	Predicted RBP	10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	GABRQ	Q9UN88	632 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	GNE	Q9Y223	722 aa	Known RBP	10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	PTCH2	Q9Y6C5	1203 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627		A0A0C4DFX4	3053 aa		10.43	□□□□□ -0.74
CTSA-208	ENST00000485627	ZMYM2	Q9UBW7	1377 aa		10.42	□□□□□ -0.74
CTSA-208	ENST00000485627	IGKV6-21	A0A0C4DH24	114 aa		10.42	□□□□□ -0.74
CTSA-208	ENST00000485627	RRN3P2	A6NIE6	340 aa		10.42	□□□□□ -0.74
CTSA-208	ENST00000485627		A6NJR5	290 aa		10.42	□□□□□ -0.74
CTSA-208	ENST00000485627	HNRNPDL	O14979	420 aa	Known RBP	10.42	□□□□□ -0.74
CTSA-208	ENST00000485627	AKAP3	O75969	853 aa		10.42	□□□□□ -0.74
CTSA-208	ENST00000485627	AFP	P02771	609 aa	Known RBP	10.42	□□□□□ -0.74
CTSA-208	ENST00000485627	SKIL	P12757	684 aa		10.42	□□□□□ -0.74
CTSA-208	ENST00000485627	HOXD8	P13378	290 aa	Predicted RBP	10.42	□□□□□ -0.74
CTSA-208	ENST00000485627	TRIM21	P19474	475 aa	Known RBP	10.42	□□□□□ -0.74
CTSA-208	ENST00000485627	KLRC1	P26715	233 aa		10.42	□□□□□ -0.74
CTSA-208	ENST00000485627	CTGF	P29279	349 aa		10.42	□□□□□ -0.74
CTSA-208	ENST00000485627	CNGA1	P29973	690 aa		10.42	□□□□□ -0.74
CTSA-208	ENST00000485627	LIG4	P49917	911 aa		10.42	□□□□□ -0.74
CTSA-208	ENST00000485627	EFNA5	P52803	228 aa		10.42	□□□□□ -0.74
CTSA-208	ENST00000485627	CHMP4BP1	P59074	171 aa		10.42	□□□□□ -0.74
CTSA-208	ENST00000485627	PRKCZ	Q05513	592 aa		10.42	□□□□□ -0.74
CTSA-208	ENST00000485627	PPFIA1	Q13136	1202 aa		10.42	□□□□□ -0.74
CTSA-208	ENST00000485627	TBX2	Q13207	712 aa	Predicted RBP	10.42	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms