RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 OR2W6PQ8NHA6 318 aa5.05□□□□□ -1.6
VPS50-217ENST00000485140 ELF4Q99607 663 aaPredicted RBP5.05□□□□□ -1.6
VPS50-217ENST00000485140 NOL10Q9BSC4 688 aaKnown RBP5.05□□□□□ -1.6
VPS50-217ENST00000485140 TRIM8Q9BZR9 551 aa5.05□□□□□ -1.6
VPS50-217ENST00000485140 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.05□□□□□ -1.6
VPS50-217ENST00000485140 SH3BP1Q9Y3L3 701 aa5.05□□□□□ -1.6
VPS50-217ENST00000485140 UBE2QL1A1L167 161 aa5.04□□□□□ -1.6
VPS50-217ENST00000485140 C2orf78A6NCI8 922 aa5.04□□□□□ -1.6
VPS50-217ENST00000485140 RHOBTB3O94955 611 aa5.04□□□□□ -1.6
VPS50-217ENST00000485140 MEF2AQ02078 507 aaPredicted RBP5.04□□□□□ -1.6
VPS50-217ENST00000485140 ZNF460Q14592 562 aa5.04□□□□□ -1.6
VPS50-217ENST00000485140 GLB1L2Q8IW92 636 aa5.04□□□□□ -1.6
VPS50-217ENST00000485140 GLB1L3Q8NCI6 653 aaPredicted RBP5.04□□□□□ -1.6
VPS50-217ENST00000485140 PPP1R14CQ8TAE6 165 aa5.04□□□□□ -1.6
VPS50-217ENST00000485140 RPL10LQ96L21 214 aaKnown RBP5.04□□□□□ -1.6
VPS50-217ENST00000485140 GPHA2Q96T91 129 aa5.04□□□□□ -1.6
VPS50-217ENST00000485140 GPR87Q9BY21 358 aa5.04□□□□□ -1.6
VPS50-217ENST00000485140 AGO3Q9H9G7 860 aaKnown RBP5.04□□□□□ -1.6
VPS50-217ENST00000485140 PCDHB6Q9Y5E3 794 aa5.04□□□□□ -1.6
VPS50-217ENST00000485140 TRIM24O15164 1050 aa5.03□□□□□ -1.6
VPS50-217ENST00000485140 CDC45O75419 566 aa5.03□□□□□ -1.6
VPS50-217ENST00000485140 SLC9A1P19634 815 aa5.03□□□□□ -1.6
VPS50-217ENST00000485140 DSG1Q02413 1049 aa5.03□□□□□ -1.6
VPS50-217ENST00000485140 MYBPC3Q14896 1274 aa5.03□□□□□ -1.6
VPS50-217ENST00000485140 FRMD7Q6ZUT3 714 aa5.03□□□□□ -1.6
VPS50-217ENST00000485140 LRRTM3Q86VH5 581 aa5.03□□□□□ -1.6
VPS50-217ENST00000485140 NIM1KQ8IY84 436 aa5.03□□□□□ -1.6
VPS50-217ENST00000485140 ZNF610Q8N9Z0 462 aa5.03□□□□□ -1.6
VPS50-217ENST00000485140 MDGA1Q8NFP4 955 aa5.03□□□□□ -1.6
VPS50-217ENST00000485140 MFSD3Q96ES6 412 aa5.03□□□□□ -1.6
VPS50-217ENST00000485140 MYL10Q9BUA6 226 aa5.03□□□□□ -1.6
VPS50-217ENST00000485140 MENTQ9BUN1 341 aa5.03□□□□□ -1.6
VPS50-217ENST00000485140 TMX1Q9H3N1 280 aa5.03□□□□□ -1.6
VPS50-217ENST00000485140 CEP72Q9P209 647 aa5.03□□□□□ -1.6
VPS50-217ENST00000485140 REXO2Q9Y3B8 237 aaKnown RBP5.03□□□□□ -1.6
VPS50-217ENST00000485140 MYPNQ86TC9 1320 aa5.02□□□□□ -1.61
VPS50-217ENST00000485140 PPP1R12AO14974 1030 aaPredicted RBP5.02□□□□□ -1.61
VPS50-217ENST00000485140 PPFIA2O75334 1257 aa5.02□□□□□ -1.61
VPS50-217ENST00000485140 APOL3O95236 402 aa5.02□□□□□ -1.61
VPS50-217ENST00000485140 C1SP09871 688 aa5.02□□□□□ -1.61
VPS50-217ENST00000485140 ATP2A2P16615 1042 aaKnown RBP5.02□□□□□ -1.61
VPS50-217ENST00000485140 SDSP20132 328 aa5.02□□□□□ -1.61
VPS50-217ENST00000485140 LSSP48449 732 aa5.02□□□□□ -1.61
VPS50-217ENST00000485140 ADAM8P78325 824 aa5.02□□□□□ -1.61
VPS50-217ENST00000485140 TAP1Q03518 808 aa5.02□□□□□ -1.61
VPS50-217ENST00000485140 KLF10Q13118 480 aa5.02□□□□□ -1.61
VPS50-217ENST00000485140 SAFB2Q14151 953 aaKnown RBP eCLIP5.02□□□□□ -1.61
VPS50-217ENST00000485140 SMN1Q16637 294 aaKnown RBP5.02□□□□□ -1.61
VPS50-217ENST00000485140 ESRP1Q6NXG1 681 aaKnown RBP5.02□□□□□ -1.61
VPS50-217ENST00000485140 MRGPRGQ86SM5 289 aa5.02□□□□□ -1.61
VPS50-217ENST00000485140 ST8SIA2Q92186 375 aa5.02□□□□□ -1.61
VPS50-217ENST00000485140 HAS1Q92839 578 aa5.02□□□□□ -1.61
VPS50-217ENST00000485140 LENG9Q96B70 501 aa5.02□□□□□ -1.61
VPS50-217ENST00000485140 CEP89Q96ST8 783 aa5.02□□□□□ -1.61
VPS50-217ENST00000485140 DNAI1Q9UI46 699 aa5.02□□□□□ -1.61
VPS50-217ENST00000485140 NUMBLQ9Y6R0 609 aa5.02□□□□□ -1.61
VPS50-217ENST00000485140 RAB11FIP3O75154 756 aa5.01□□□□□ -1.61
VPS50-217ENST00000485140 GYPEP15421 78 aa5.01□□□□□ -1.61
VPS50-217ENST00000485140 PTX3P26022 381 aaPredicted RBP5.01□□□□□ -1.61
VPS50-217ENST00000485140 ANTXR2P58335 489 aa5.01□□□□□ -1.61
VPS50-217ENST00000485140 SPTY2D1Q68D10 685 aaPredicted RBP5.01□□□□□ -1.61
VPS50-217ENST00000485140 LMBR1LQ6UX01 489 aa5.01□□□□□ -1.61
VPS50-217ENST00000485140 FAM83AQ86UY5 434 aa5.01□□□□□ -1.61
VPS50-217ENST00000485140 ULK2Q8IYT8 1036 aa5.01□□□□□ -1.61
VPS50-217ENST00000485140 CHFRQ96EP1 664 aa5.01□□□□□ -1.61
VPS50-217ENST00000485140 RNPC3Q96LT9 517 aaKnown RBP5.01□□□□□ -1.61
VPS50-217ENST00000485140 ZNF512Q96ME7 567 aaPredicted RBP5.01□□□□□ -1.61
VPS50-217ENST00000485140 POFUT1Q9H488 388 aa5.01□□□□□ -1.61
VPS50-217ENST00000485140 ZMAT4Q9H898 229 aa5.01□□□□□ -1.61
VPS50-217ENST00000485140 HDAC5Q9UQL6 1122 aa5.01□□□□□ -1.61
VPS50-217ENST00000485140 XDHP47989 1333 aa5□□□□□ -1.61
VPS50-217ENST00000485140 A0A087X1B8 175 aa5□□□□□ -1.61
VPS50-217ENST00000485140 DIRC3C9JPN6 131 aa5□□□□□ -1.61
VPS50-217ENST00000485140 KPNA6O60684 536 aa5□□□□□ -1.61
VPS50-217ENST00000485140 GAAP10253 952 aa5□□□□□ -1.61
VPS50-217ENST00000485140 TOB2Q14106 344 aaPredicted RBP5□□□□□ -1.61
VPS50-217ENST00000485140 RABL3Q5HYI8 236 aa5□□□□□ -1.61
VPS50-217ENST00000485140 CREB3L3Q68CJ9 461 aa5□□□□□ -1.61
VPS50-217ENST00000485140 FAM180AQ6UWF9 173 aa5□□□□□ -1.61
VPS50-217ENST00000485140 PDZD4Q76G19 769 aaPredicted RBP5□□□□□ -1.61
VPS50-217ENST00000485140 DOK3Q7L591 496 aa5□□□□□ -1.61
VPS50-217ENST00000485140 SMC1BQ8NDV3 1235 aa5□□□□□ -1.61
VPS50-217ENST00000485140 SLC25A43Q8WUT9 341 aaPredicted RBP5□□□□□ -1.61
VPS50-217ENST00000485140 ATXN2LQ8WWM7 1075 aaKnown RBP5□□□□□ -1.61
VPS50-217ENST00000485140 NEU4Q8WWR8 484 aaPredicted RBP5□□□□□ -1.61
VPS50-217ENST00000485140 FAM193BQ96PV7 902 aaPredicted RBP5□□□□□ -1.61
VPS50-217ENST00000485140 DCLRE1CQ96SD1 692 aaKnown RBP5□□□□□ -1.61
VPS50-217ENST00000485140 MNTQ99583 582 aa5□□□□□ -1.61
VPS50-217ENST00000485140 EPC1Q9H2F5 836 aa5□□□□□ -1.61
VPS50-217ENST00000485140 FANCLQ9NW38 375 aa5□□□□□ -1.61
VPS50-217ENST00000485140 NCDNQ9UBB6 729 aa5□□□□□ -1.61
VPS50-217ENST00000485140 MAPRE3Q9UPY8 281 aa5□□□□□ -1.61
VPS50-217ENST00000485140 PLSCR1O15162 318 aa4.99□□□□□ -1.61
VPS50-217ENST00000485140 RAMP2O60895 175 aa4.99□□□□□ -1.61
VPS50-217ENST00000485140 ALDH1A2O94788 518 aa4.99□□□□□ -1.61
VPS50-217ENST00000485140 SEC24DO94855 1032 aaPredicted RBP4.99□□□□□ -1.61
VPS50-217ENST00000485140 GASTP01350 101 aa4.99□□□□□ -1.61
VPS50-217ENST00000485140 PFKMP08237 780 aa4.99□□□□□ -1.61
VPS50-217ENST00000485140 MGAT1P26572 445 aa4.99□□□□□ -1.61
VPS50-217ENST00000485140 DUSP2Q05923 314 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms