RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 HOXA11P31270 313 aaPredicted RBP18.62■□□□□ 0.57
USP40-212ENST00000473191 MCM7P33993 719 aa18.62■□□□□ 0.57
USP40-212ENST00000473191 CDC42EP1Q00587 391 aa18.62■□□□□ 0.57
USP40-212ENST00000473191 UBE3AQ05086 875 aa18.62■□□□□ 0.57
USP40-212ENST00000473191 DUSP6Q16828 381 aa18.62■□□□□ 0.57
USP40-212ENST00000473191 UBXN11Q5T124 520 aa18.62■□□□□ 0.57
USP40-212ENST00000473191 FERMT3Q86UX7 667 aa18.62■□□□□ 0.57
USP40-212ENST00000473191 SLC39A11Q8N1S5 342 aa18.62■□□□□ 0.57
USP40-212ENST00000473191 RNF149Q8NC42 400 aa18.62■□□□□ 0.57
USP40-212ENST00000473191 BCL7CQ8WUZ0 217 aaPredicted RBP18.62■□□□□ 0.57
USP40-212ENST00000473191 PSPC1Q8WXF1 523 aaKnown RBP18.62■□□□□ 0.57
USP40-212ENST00000473191 ZNF558Q96NG5 402 aa18.62■□□□□ 0.57
USP40-212ENST00000473191 TCF25Q9BQ70 676 aa18.62■□□□□ 0.57
USP40-212ENST00000473191 AGPAT5Q9NUQ2 364 aa18.62■□□□□ 0.57
USP40-212ENST00000473191 DKC1O60832 514 aaKnown RBP eCLIP18.61■□□□□ 0.57
USP40-212ENST00000473191 OFD1O75665 1012 aa18.61■□□□□ 0.57
USP40-212ENST00000473191 CENPBP07199 599 aaPredicted RBP18.61■□□□□ 0.57
USP40-212ENST00000473191 RFC5P40937 340 aa18.61■□□□□ 0.57
USP40-212ENST00000473191 BCAR1P56945 870 aa18.61■□□□□ 0.57
USP40-212ENST00000473191 SMAD4Q13485 552 aaKnown RBP18.61■□□□□ 0.57
USP40-212ENST00000473191 TRIM29Q14134 588 aa18.61■□□□□ 0.57
USP40-212ENST00000473191 NBR1Q14596 966 aa18.61■□□□□ 0.57
USP40-212ENST00000473191 AGMOQ6ZNB7 445 aa18.61■□□□□ 0.57
USP40-212ENST00000473191 ADHFE1Q8IWW8 467 aa18.61■□□□□ 0.57
USP40-212ENST00000473191 SMRP1Q8NCR6 262 aa18.61■□□□□ 0.57
USP40-212ENST00000473191 ASAP3Q8TDY4 903 aa18.61■□□□□ 0.57
USP40-212ENST00000473191 MTRQ99707 1265 aa18.61■□□□□ 0.57
USP40-212ENST00000473191 JPH2Q9BR39 696 aaPredicted RBP18.61■□□□□ 0.57
USP40-212ENST00000473191 TRAIPQ9BWF2 469 aa18.61■□□□□ 0.57
USP40-212ENST00000473191 C1QTNF1Q9BXJ1 281 aa18.61■□□□□ 0.57
USP40-212ENST00000473191 NRDE2Q9H7Z3 1164 aa18.61■□□□□ 0.57
USP40-212ENST00000473191 CDH22Q9UJ99 828 aa18.61■□□□□ 0.57
USP40-212ENST00000473191 INPP5FQ9Y2H2 1132 aa18.61■□□□□ 0.57
USP40-212ENST00000473191 NCOR1O75376 2440 aa18.6■□□□□ 0.57
USP40-212ENST00000473191 EYA4O95677 639 aa18.6■□□□□ 0.57
USP40-212ENST00000473191 SPATA31C1P0DKV0 1188 aa18.6■□□□□ 0.57
USP40-212ENST00000473191 KCNC3Q14003 757 aa18.6■□□□□ 0.57
USP40-212ENST00000473191 ZNF174Q15697 407 aa18.6■□□□□ 0.57
USP40-212ENST00000473191 OTUD6AQ7L8S5 288 aa18.6■□□□□ 0.57
USP40-212ENST00000473191 ZNF280BQ86YH2 543 aa18.6■□□□□ 0.57
USP40-212ENST00000473191 C8orf76Q96K31 380 aa18.6■□□□□ 0.57
USP40-212ENST00000473191 APOL5Q9BWW9 433 aa18.6■□□□□ 0.57
USP40-212ENST00000473191 INO80BQ9C086 356 aaPredicted RBP18.6■□□□□ 0.57
USP40-212ENST00000473191 ENTPD7Q9NQZ7 604 aa18.6■□□□□ 0.57
USP40-212ENST00000473191 TBC1D13Q9NVG8 400 aa18.6■□□□□ 0.57
USP40-212ENST00000473191 SPG21Q9NZD8 308 aa18.6■□□□□ 0.57
USP40-212ENST00000473191 DNAJB4Q9UDY4 337 aa18.6■□□□□ 0.57
USP40-212ENST00000473191 PCDHB2Q9Y5E7 798 aa18.6■□□□□ 0.57
USP40-212ENST00000473191 ZC3H11AO75152 810 aaKnown RBP eCLIP18.59■□□□□ 0.57
USP40-212ENST00000473191 MED24O75448 989 aa18.59■□□□□ 0.57
USP40-212ENST00000473191 LYPLA2O95372 231 aa18.59■□□□□ 0.57
USP40-212ENST00000473191 RARRES1P49788 294 aa18.59■□□□□ 0.57
USP40-212ENST00000473191 COASYQ13057 564 aa18.59■□□□□ 0.57
USP40-212ENST00000473191 CSPP1Q1MSJ5 1256 aa18.59■□□□□ 0.57
USP40-212ENST00000473191 LLGL2Q6P1M3 1020 aa18.59■□□□□ 0.57
USP40-212ENST00000473191 SRGAP1Q7Z6B7 1085 aa18.59■□□□□ 0.57
USP40-212ENST00000473191 FEZF2Q8TBJ5 459 aa18.59■□□□□ 0.57
USP40-212ENST00000473191 AUTS2Q8WXX7 1259 aa18.59■□□□□ 0.57
USP40-212ENST00000473191 PPP2R3CQ969Q6 453 aa18.59■□□□□ 0.57
USP40-212ENST00000473191 CPB2Q96IY4 423 aa18.59■□□□□ 0.57
USP40-212ENST00000473191 EIF2AQ9BY44 585 aaKnown RBP18.59■□□□□ 0.57
USP40-212ENST00000473191 GPRC5CQ9NQ84 441 aa18.59■□□□□ 0.57
USP40-212ENST00000473191 LZTS1Q9Y250 596 aa18.59■□□□□ 0.57
USP40-212ENST00000473191 TSPAN1O60635 241 aa18.58■□□□□ 0.56
USP40-212ENST00000473191 ZNF623O75123 536 aa18.58■□□□□ 0.56
USP40-212ENST00000473191 DDHD2O94830 711 aa18.58■□□□□ 0.56
USP40-212ENST00000473191 GLRA2P23416 452 aa18.58■□□□□ 0.56
USP40-212ENST00000473191 ARL2P36404 184 aa18.58■□□□□ 0.56
USP40-212ENST00000473191 TECP42680 631 aa18.58■□□□□ 0.56
USP40-212ENST00000473191 CAPSQ13938 189 aa18.58■□□□□ 0.56
USP40-212ENST00000473191 MAEAQ7L5Y9 396 aa18.58■□□□□ 0.56
USP40-212ENST00000473191 TMC7Q7Z402 723 aa18.58■□□□□ 0.56
USP40-212ENST00000473191 CATSPER3Q86XQ3 398 aa18.58■□□□□ 0.56
USP40-212ENST00000473191 SMG8Q8ND04 991 aaKnown RBP18.58■□□□□ 0.56
USP40-212ENST00000473191 TCP11Q8WWU5 503 aa18.58■□□□□ 0.56
USP40-212ENST00000473191 VN1R3Q9BXE9 311 aa18.58■□□□□ 0.56
USP40-212ENST00000473191 GBP3Q9H0R5 595 aa18.58■□□□□ 0.56
USP40-212ENST00000473191 RNF39Q9H2S5 420 aa18.58■□□□□ 0.56
USP40-212ENST00000473191 PRKAG3Q9UGI9 489 aa18.58■□□□□ 0.56
USP40-212ENST00000473191 USP15Q9Y4E8 981 aaPredicted RBP18.58■□□□□ 0.56
USP40-212ENST00000473191 PPME1Q9Y570 386 aa18.58■□□□□ 0.56
USP40-212ENST00000473191 GALTP07902 379 aa18.57■□□□□ 0.56
USP40-212ENST00000473191 PTENP60484 403 aa18.57■□□□□ 0.56
USP40-212ENST00000473191 NOMO2Q5JPE7 1267 aa18.57■□□□□ 0.56
USP40-212ENST00000473191 TMEM31Q5JXX7 168 aa18.57■□□□□ 0.56
USP40-212ENST00000473191 CDR2LQ86X02 465 aaPredicted RBP18.57■□□□□ 0.56
USP40-212ENST00000473191 FBXO18Q8NFZ0 1043 aa18.57■□□□□ 0.56
USP40-212ENST00000473191 LLPHQ9BRT6 129 aaKnown RBP18.57■□□□□ 0.56
USP40-212ENST00000473191 MRPL9Q9BYD2 267 aaKnown RBP18.57■□□□□ 0.56
USP40-212ENST00000473191 ANKEF1Q9NU02 776 aa18.57■□□□□ 0.56
USP40-212ENST00000473191 MUTYHQ9UIF7 546 aa18.57■□□□□ 0.56
USP40-212ENST00000473191 FAM50BQ9Y247 325 aa18.57■□□□□ 0.56
USP40-212ENST00000473191 HES2Q9Y543 173 aa18.57■□□□□ 0.56
USP40-212ENST00000473191 C2orf71A6NGG8 1288 aa18.56■□□□□ 0.56
USP40-212ENST00000473191 B4GALT5O43286 388 aa18.56■□□□□ 0.56
USP40-212ENST00000473191 USO1O60763 962 aaKnown RBP18.56■□□□□ 0.56
USP40-212ENST00000473191 GPR37L1O60883 481 aa18.56■□□□□ 0.56
USP40-212ENST00000473191 CD2BP2O95400 341 aaKnown RBP18.56■□□□□ 0.56
USP40-212ENST00000473191 POMCP01189 267 aa18.56■□□□□ 0.56
USP40-212ENST00000473191 PPM1AP35813 382 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms