RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 PRPHP41219 470 aa13.3□□□□□ -0.28
SYNE1-221ENST00000472563 RILPL1Q5EBL4 403 aa13.3□□□□□ -0.28
SYNE1-221ENST00000472563 MCTP1Q6DN14 999 aa13.3□□□□□ -0.28
SYNE1-221ENST00000472563 THNSL1Q8IYQ7 743 aa13.3□□□□□ -0.28
SYNE1-221ENST00000472563 MCPH1Q8NEM0 835 aa13.3□□□□□ -0.28
SYNE1-221ENST00000472563 ASAP3Q8TDY4 903 aa13.3□□□□□ -0.28
SYNE1-221ENST00000472563 PPP2R3CQ969Q6 453 aa13.3□□□□□ -0.28
SYNE1-221ENST00000472563 UHRF1Q96T88 793 aaPredicted RBP13.3□□□□□ -0.28
SYNE1-221ENST00000472563 MRPL9Q9BYD2 267 aaKnown RBP13.3□□□□□ -0.28
SYNE1-221ENST00000472563 NFKBIZQ9BYH8 718 aa13.3□□□□□ -0.28
SYNE1-221ENST00000472563 BACH2Q9BYV9 841 aa13.3□□□□□ -0.28
SYNE1-221ENST00000472563 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.3□□□□□ -0.28
SYNE1-221ENST00000472563 HCSTQ9UBK5 93 aa13.3□□□□□ -0.28
SYNE1-221ENST00000472563 SMC3Q9UQE7 1217 aa13.3□□□□□ -0.28
SYNE1-221ENST00000472563 STK24Q9Y6E0 443 aa13.3□□□□□ -0.28
SYNE1-221ENST00000472563 H3BQV1 296 aa13.29□□□□□ -0.28
SYNE1-221ENST00000472563 USO1O60763 962 aaKnown RBP13.29□□□□□ -0.28
SYNE1-221ENST00000472563 GLRA2P23416 452 aa13.29□□□□□ -0.28
SYNE1-221ENST00000472563 AXLP30530 894 aa13.29□□□□□ -0.28
SYNE1-221ENST00000472563 IRS1P35568 1242 aa13.29□□□□□ -0.28
SYNE1-221ENST00000472563 PPM1AP35813 382 aa13.29□□□□□ -0.28
SYNE1-221ENST00000472563 PLCB3Q01970 1234 aa13.29□□□□□ -0.28
SYNE1-221ENST00000472563 HYAL1Q12794 435 aa13.29□□□□□ -0.28
SYNE1-221ENST00000472563 CAPSQ13938 189 aa13.29□□□□□ -0.28
SYNE1-221ENST00000472563 CTC1Q2NKJ3 1217 aa13.29□□□□□ -0.28
SYNE1-221ENST00000472563 PUS10Q3MIT2 529 aaKnown RBP13.29□□□□□ -0.28
SYNE1-221ENST00000472563 POTEGQ6S5H5 508 aa13.29□□□□□ -0.28
SYNE1-221ENST00000472563 KCNT2Q6UVM3 1135 aa13.29□□□□□ -0.28
SYNE1-221ENST00000472563 GLB1LQ6UWU2 654 aa13.29□□□□□ -0.28
SYNE1-221ENST00000472563 MRPL10Q7Z7H8 261 aaKnown RBP13.29□□□□□ -0.28
SYNE1-221ENST00000472563 IGSF22Q8N9C0 903 aa13.29□□□□□ -0.28
SYNE1-221ENST00000472563 HELQQ8TDG4 1101 aa13.29□□□□□ -0.28
SYNE1-221ENST00000472563 PGBD4Q96DM1 585 aa13.29□□□□□ -0.28
SYNE1-221ENST00000472563 CCDC51Q96ER9 411 aa13.29□□□□□ -0.28
SYNE1-221ENST00000472563 ZNF558Q96NG5 402 aa13.29□□□□□ -0.28
SYNE1-221ENST00000472563 RAB34Q9BZG1 259 aa13.29□□□□□ -0.28
SYNE1-221ENST00000472563 POLR3FQ9H1D9 316 aaPredicted RBP13.29□□□□□ -0.28
SYNE1-221ENST00000472563 LZTS1Q9Y250 596 aa13.29□□□□□ -0.28
SYNE1-221ENST00000472563 PCDHB2Q9Y5E7 798 aa13.29□□□□□ -0.28
SYNE1-221ENST00000472563 ARHGEF35A5YM69 484 aa13.28□□□□□ -0.28
SYNE1-221ENST00000472563 INO80B-WBP1J3KQ70 363 aa13.28□□□□□ -0.28
SYNE1-221ENST00000472563 TNFRSF10AO00220 468 aa13.28□□□□□ -0.28
SYNE1-221ENST00000472563 TSPAN1O60635 241 aa13.28□□□□□ -0.28
SYNE1-221ENST00000472563 ERLIN2O94905 339 aa13.28□□□□□ -0.28
SYNE1-221ENST00000472563 CYP11B2P19099 503 aa13.28□□□□□ -0.28
SYNE1-221ENST00000472563 CCT6AP40227 531 aaKnown RBP13.28□□□□□ -0.28
SYNE1-221ENST00000472563 NCBP1Q09161 790 aaKnown RBP13.28□□□□□ -0.28
SYNE1-221ENST00000472563 CUL4AQ13619 759 aa13.28□□□□□ -0.28
SYNE1-221ENST00000472563 UBXN11Q5T124 520 aa13.28□□□□□ -0.28
SYNE1-221ENST00000472563 PDE12Q6L8Q7 609 aaKnown RBP13.28□□□□□ -0.28
SYNE1-221ENST00000472563 PADI6Q6TGC4 694 aa13.28□□□□□ -0.28
SYNE1-221ENST00000472563 CNNM3Q8NE01 707 aa13.28□□□□□ -0.28
SYNE1-221ENST00000472563 MRPS27Q92552 414 aaKnown RBP13.28□□□□□ -0.28
SYNE1-221ENST00000472563 LPPQ93052 612 aa13.28□□□□□ -0.28
SYNE1-221ENST00000472563 GPRC5CQ9NQ84 441 aa13.28□□□□□ -0.28
SYNE1-221ENST00000472563 SPG21Q9NZD8 308 aa13.28□□□□□ -0.28
SYNE1-221ENST00000472563 PUF60Q9UHX1 559 aaKnown RBP13.28□□□□□ -0.28
SYNE1-221ENST00000472563 CARNS1A5YM72 827 aa13.27□□□□□ -0.29
SYNE1-221ENST00000472563 OFD1O75665 1012 aa13.27□□□□□ -0.29
SYNE1-221ENST00000472563 NCLP19338 710 aaKnown RBP13.27□□□□□ -0.29
SYNE1-221ENST00000472563 LTBRP36941 435 aa13.27□□□□□ -0.29
SYNE1-221ENST00000472563 ATP2C1P98194 919 aaPredicted RBP13.27□□□□□ -0.29
SYNE1-221ENST00000472563 KRT17Q04695 432 aa13.27□□□□□ -0.29
SYNE1-221ENST00000472563 MBTD1Q05BQ5 628 aa13.27□□□□□ -0.29
SYNE1-221ENST00000472563 ADAM15Q13444 863 aa13.27□□□□□ -0.29
SYNE1-221ENST00000472563 IL17AQ16552 155 aa13.27□□□□□ -0.29
SYNE1-221ENST00000472563 AMHR2Q16671 573 aa13.27□□□□□ -0.29
SYNE1-221ENST00000472563 NOMO2Q5JPE7 1267 aa13.27□□□□□ -0.29
SYNE1-221ENST00000472563 LARP1BQ659C4 914 aaKnown RBP13.27□□□□□ -0.29
SYNE1-221ENST00000472563 DTHD1Q6ZMT9 781 aa13.27□□□□□ -0.29
SYNE1-221ENST00000472563 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.27□□□□□ -0.29
SYNE1-221ENST00000472563 MICAL1Q8TDZ2 1067 aa13.27□□□□□ -0.29
SYNE1-221ENST00000472563 TLR9Q9NR96 1032 aa13.27□□□□□ -0.29
SYNE1-221ENST00000472563 CLDND1Q9NY35 253 aa13.27□□□□□ -0.29
SYNE1-221ENST00000472563 CNTNAP2Q9UHC6 1331 aa13.27□□□□□ -0.29
SYNE1-221ENST00000472563 BDP1A6H8Y1 2624 aa13.26□□□□□ -0.29
SYNE1-221ENST00000472563 GRXCR2A6NFK2 248 aa13.26□□□□□ -0.29
SYNE1-221ENST00000472563 MEIS3P2A8K0S8 358 aa13.26□□□□□ -0.29
SYNE1-221ENST00000472563 H3BQ06 376 aaPredicted RBP13.26□□□□□ -0.29
SYNE1-221ENST00000472563 FSCN2O14926 492 aa13.26□□□□□ -0.29
SYNE1-221ENST00000472563 CSPG5O95196 566 aa13.26□□□□□ -0.29
SYNE1-221ENST00000472563 MYH9P35579 1960 aaKnown RBP13.26□□□□□ -0.29
SYNE1-221ENST00000472563 PBX3P40426 434 aa13.26□□□□□ -0.29
SYNE1-221ENST00000472563 ALDH7A1P49419 539 aaKnown RBP13.26□□□□□ -0.29
SYNE1-221ENST00000472563 COL4A4P53420 1690 aaPredicted RBP13.26□□□□□ -0.29
SYNE1-221ENST00000472563 ERVFC1P60507 584 aa13.26□□□□□ -0.29
SYNE1-221ENST00000472563 ECM1Q16610 540 aa13.26□□□□□ -0.29
SYNE1-221ENST00000472563 LONRF3Q496Y0 759 aa13.26□□□□□ -0.29
SYNE1-221ENST00000472563 KRT79Q5XKE5 535 aa13.26□□□□□ -0.29
SYNE1-221ENST00000472563 CDCA2Q69YH5 1023 aaPredicted RBP13.26□□□□□ -0.29
SYNE1-221ENST00000472563 PTCRAQ6ISU1 281 aaPredicted RBP13.26□□□□□ -0.29
SYNE1-221ENST00000472563 NOTUMQ6P988 496 aa13.26□□□□□ -0.29
SYNE1-221ENST00000472563 PPP4R3CPQ6ZMV5 832 aa13.26□□□□□ -0.29
SYNE1-221ENST00000472563 AGMOQ6ZNB7 445 aa13.26□□□□□ -0.29
SYNE1-221ENST00000472563 EP400NLQ6ZTU2 488 aa13.26□□□□□ -0.29
SYNE1-221ENST00000472563 MAEAQ7L5Y9 396 aa13.26□□□□□ -0.29
SYNE1-221ENST00000472563 ADGRD2Q7Z7M1 963 aa13.26□□□□□ -0.29
SYNE1-221ENST00000472563 SLC39A11Q8N1S5 342 aa13.26□□□□□ -0.29
SYNE1-221ENST00000472563 EFHBQ8N7U6 833 aa13.26□□□□□ -0.29
SYNE1-221ENST00000472563 SNX29Q8TEQ0 813 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms